RLG00000021396

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005179
Physical Location & Seq
Reverse (-)
74819980 .. 74821257
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021396

Sequence Viewer

Length: 1278 bp
ATGGCTGTTCTAGCCCAGTACTATCCCAACAAAACAGTAACCATAGTTGATTTCGACCAAGCCAAACTGCAATTCTGGGCAGGAGTCAATGTCGATTGGGTTGAGCCCGGCTTAGGAGCCTTAGCAGGTGGGCTAAACAATTTGGAGCTCAGAGACCAAGTAGAAGAAGTCATCGATGAGTCCCAAATTATTTTTATATGGGTTGAGATTCCCACCAAGAGAGGTGGTTTACCTGGTCTAGATACCACTGAGTGGGAGAGAGCAGTGAGAACAATTGTGCAAGCTTCTGCTACTTCGAAAATTGTTGTTGAGAAGAGCACCATGCCTGTTGACATGTTTAATCTCACCACTAGATTTCTTTCTCAAAGGCCACAAGCTCAAGTTCAACAGAACATTCAGTTTGCTGTTTTCTCCAATCCCGAACTTTCTTGCCCAGGTCAAATGCTAAATGACATGCAATTCCCAGATCAAGTGATAATAGCACGGAAGTCAGATGTAGGAGATACTGATATCTTAGTGGAAATGTATGCACAGTGGGTTCCTGCACAGAGAATTATAGTTCTTCCTAATCATCTATCAGCAGAACTTGGGAAGATCATCACAAGTGTGATGGCAGGTTTGAAGATTACGGTGATGAATGTCATTGCAAGCTACTGTGAAAAAGTTGGGGCAAATTTTAATCATGTCAAACAGATGCTAGGAGATGCATTTATGGAATCAACATTAGGAATTGGTGGTCCTGATCTACTAAAGGATATAGTGTATTGTAAGGATGCTCTTCAAAATGTGGGATTGGTCACAGAGGCTAAGCTATTGTCTGACATACTTAGGTTGGATAAGAAGAAGAGGGAGCATTTTGTGCAATTGATGCTAAATAATATGTCAACTTTGGCAGAGAAGAGGGTTGCTGTATATGGGGTCACATACAAGAGCAACATGGCAGATCTCACCAATTCCCCTGCAGTGAGTGTTTGTAAAGCACTTCAGAAGGAAGGTGCCATCATTCAGATTTTTGATCCACTAAGAGATAGAAATGCAATCTTGAACTGCTTCCGTAATCGTGTAAGGGTGGGAGTAGTTGATGATCCACAACAAGCATATCAAGGAGCTCATGCTATTCTTTTTCTAGTGAATACAAACCTTCAGCATAATTTCCAACAGATGAGGGCTGCAATGGTAGAGCCACCATTCTTATTTTTCGCCTGCAGACTGAATGTTAACTATGATGCTCTTAGGTTGCTGGGATTTCAAGTTCATGTCTTTGGTAATCAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

426

Amino Acids

47.54

Weight (kDa)

5.79

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 11 - 163 1.6e-23 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 193 - 272 5.8e-09 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 303 - 399 2.4e-14 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 2 cut(s) 116, 605
AccB1I GGYRCC 1 cut(s) 995
AccB7I CCANNNNNTGG 1 cut(s) 252
AclWI GGATC 2 cut(s) 1010, 1079
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 2 cut(s) 968, 1127
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 113, 252
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 5 cut(s) 386, 622, 782, 1045, 1250
AjnI CCWGG 2 cut(s) 232, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AleI CACNNNNGTG 1 cut(s) 605
AloI GAACNNNNNNTCC 2 cut(s) 1236, 1268
AluBI AGCT 6 cut(s) 148, 284, 377, 651, 811, 1109
AluI AGCT 6 cut(s) 148, 284, 377, 651, 811, 1109
Alw21I GWGCWC 3 cut(s) 150, 320, 1111
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 2 cut(s) 1010, 1079
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 1 cut(s) 1169
ApoI RAATTY 1 cut(s) 673
Asp700I GAANNNNTTC 1 cut(s) 1049
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 337, 643, 940
AsuII TTCGAA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 737
BanI GGYRCC 1 cut(s) 995
BanII GRGCYC 3 cut(s) 108, 150, 1111
Bbv12I GWGCWC 3 cut(s) 150, 320, 1111
BbvI GCAGC 1 cut(s) 1156
BccI CCATC 2 cut(s) 604, 1007
BciT130I CCWGG 2 cut(s) 234, 435
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 5 cut(s) 11, 239, 351, 698, 1127
BfmI CTRYAG 2 cut(s) 960, 1204
BfuAI ACCTGC 2 cut(s) 116, 605
BglII AGATCT 1 cut(s) 943
BisI GCNGC 1 cut(s) 1170
BlpI GCTNAGC 1 cut(s) 807
BlsI GCNGC 1 cut(s) 1171
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 3 cut(s) 108, 234, 435
Bme18I GGWCC 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 3 cut(s) 118, 540, 997
BmrFI CCNGG 3 cut(s) 108, 234, 435
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 5 cut(s) 684, 694, 763, 858, 1216
BmuI ACTGGG 1 cut(s) 10
Bpu10I CCTNAGC 2 cut(s) 112, 121
Bpu1102I GCTNAGC 1 cut(s) 807
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 252
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 642, 1179
BseBI CCWGG 2 cut(s) 234, 435
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 2 cut(s) 113, 252
BseMI GCAATG 2 cut(s) 642, 1179
BseMII CTCAG 2 cut(s) 163, 240
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 1156
BseYI CCCAGC 1 cut(s) 1240
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 1 cut(s) 995
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 150, 320, 1111
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 113, 252
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 4 cut(s) 108, 150, 320, 1111
Bsp143I GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
Bsp1720I GCTNAGC 1 cut(s) 807
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 2 cut(s) 162, 241
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 3 cut(s) 118, 540, 997
BspMAI CTGCAG 2 cut(s) 964, 1208
BspMI ACCTGC 2 cut(s) 116, 605
BspPI GGATC 2 cut(s) 1010, 1079
BspQI GCTCTTC 2 cut(s) 308, 783
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 995
BspTNI GGTCTC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 642, 1179
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
Bst2UI CCWGG 2 cut(s) 234, 435
Bst4CI ACNGT 4 cut(s) 37, 534, 631, 656
Bst6I CTCTTC 4 cut(s) 308, 783, 839, 893
BstAPI GCANNNNNTGC 2 cut(s) 859, 868
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 282, 649, 1204
BstDEI CTNAG 9 cut(s) 112, 121, 149, 249, 514, 807, 827, 1022, 1232
BstF5I GGATG 1 cut(s) 778
BstKTI GATC 6 cut(s) 469, 597, 745, 946, 1018, 1087
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 11, 859, 868
BstNI CCWGG 2 cut(s) 234, 435
BstNSI RCATGY 2 cut(s) 337, 457
BstSCI CCNGG 3 cut(s) 106, 232, 433
BstSFI CTRYAG 2 cut(s) 960, 1204
BstV1I GCAGC 1 cut(s) 1156
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 370
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 2 cut(s) 270, 969
BtsIMutI CAGTG 4 cut(s) 246, 270, 539, 969
BveI ACCTGC 2 cut(s) 116, 605
Cac8I GCNNGC 3 cut(s) 282, 649, 1204
Cfr13I GGNCC 1 cut(s) 737
ClaI ATCGAT 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 7 cut(s) 322, 334, 454, 683, 937, 1112, 1256
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 9 cut(s) 112, 121, 149, 249, 514, 807, 827, 1022, 1232
DpnI GATC 6 cut(s) 468, 596, 744, 945, 1017, 1086
DpnII GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
DraIII CACNNNGTG 1 cut(s) 252
Eam1104I CTCTTC 4 cut(s) 308, 783, 839, 893
EarI CTCTTC 4 cut(s) 308, 783, 839, 893
Ecl136II GAGCTC 2 cut(s) 148, 1109
Eco24I GRGCYC 3 cut(s) 108, 150, 1111
Eco31I GGTCTC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 737
Eco53kI GAGCTC 2 cut(s) 148, 1109
Eco57I CTGAAG 2 cut(s) 968, 1127
EcoICRI GAGCTC 2 cut(s) 148, 1109
EcoRII CCWGG 2 cut(s) 232, 433
EcoRV GATATC 1 cut(s) 511
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 3 cut(s) 108, 150, 1111
FaeI CATG 7 cut(s) 325, 337, 457, 686, 940, 1115, 1259
FaqI GGGAC 1 cut(s) 166
FatI CATG 7 cut(s) 321, 333, 453, 682, 936, 1111, 1255
Fnu4HI GCNGC 1 cut(s) 1170
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 3 cut(s) 108, 150, 1111
Fsp4HI GCNGC 1 cut(s) 1170
FspBI CTAG 5 cut(s) 11, 239, 351, 698, 1127
GluI GCNGC 1 cut(s) 1170
GsaI CCCAGC 1 cut(s) 1244
HaeIII GGCC 1 cut(s) 370
HapII CCGG 1 cut(s) 108
Hin1II CATG 7 cut(s) 325, 337, 457, 686, 940, 1115, 1259
HincII GTYRAC 3 cut(s) 331, 885, 1219
HindII GTYRAC 3 cut(s) 331, 885, 1219
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 4 cut(s) 84, 179, 208, 716
HpaI GTTAAC 1 cut(s) 1219
HpaII CCGG 1 cut(s) 108
HphI GGTGA 3 cut(s) 337, 643, 940
Hpy166II GTNNAC 4 cut(s) 230, 331, 885, 1219
Hpy188I TCNGA 5 cut(s) 152, 493, 820, 987, 1008
Hpy188III TCNNGA 5 cut(s) 239, 419, 740, 1042, 1271
Hpy8I GTNNAC 4 cut(s) 230, 331, 885, 1219
HpyAV CCTTC 3 cut(s) 982, 986, 1151
HpyCH4III ACNGT 4 cut(s) 37, 534, 631, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 859, 868
HpyF3I CTNAG 9 cut(s) 112, 121, 149, 249, 514, 807, 827, 1022, 1232
Hsp92II CATG 7 cut(s) 325, 337, 457, 686, 940, 1115, 1259
KspAI GTTAAC 1 cut(s) 1219
Kzo9I GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
LguI GCTCTTC 2 cut(s) 308, 783
LmnI GCTCC 4 cut(s) 116, 145, 850, 1106
Lsp1109I GCAGC 1 cut(s) 1156
LweI GCATC 5 cut(s) 684, 694, 763, 858, 1216
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 5 cut(s) 11, 239, 351, 698, 1127
MaeIII GTNAC 3 cut(s) 37, 796, 919
MalI GATC 6 cut(s) 468, 596, 744, 945, 1017, 1086
MboI GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
MboII GAAGA 9 cut(s) 176, 325, 554, 604, 634, 770, 853, 856, 910
MfeI CAATTG 2 cut(s) 273, 863
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 4 cut(s) 108, 150, 320, 1111
MlyI GAGTC 2 cut(s) 93, 188
MmeI TCCRAC 2 cut(s) 813, 1180
MnlI CCTC 5 cut(s) 215, 796, 840, 894, 1158
Mph1103I ATGCAT 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 1049
MseI TTAA 3 cut(s) 339, 678, 1218
MslI CAYNNNNRTG 1 cut(s) 605
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 3 cut(s) 108, 234, 435
MunI CAATTG 2 cut(s) 273, 863
MvaI CCWGG 2 cut(s) 234, 435
MwoI GCNNNNNNNGC 3 cut(s) 11, 859, 868
NciI CCSGG 1 cut(s) 108
NdeII GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
NlaIII CATG 7 cut(s) 325, 337, 457, 686, 940, 1115, 1259
NlaIV GGNNCC 3 cut(s) 118, 540, 997
NmuCI GTSAC 2 cut(s) 796, 919
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 2 cut(s) 337, 457
NspV TTCGAA 1 cut(s) 296
OliI CACNNNNGTG 1 cut(s) 605
PaqCI CACCTGC 1 cut(s) 116
PciI ACATGT 1 cut(s) 333
PciSI GCTCTTC 2 cut(s) 308, 783
PdmI GAANNNNTTC 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 208, 716
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 1 cut(s) 1171
PleI GAGTC 2 cut(s) 92, 187
PpsI GAGTC 2 cut(s) 92, 187
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 2 cut(s) 150, 1111
Psp6I CCWGG 2 cut(s) 232, 433
PspFI CCCAGC 1 cut(s) 1240
PspGI CCWGG 2 cut(s) 232, 433
PspN4I GGNNCC 3 cut(s) 118, 540, 997
PspPI GGNCC 1 cut(s) 737
PstI CTGCAG 2 cut(s) 964, 1208
PsuI RGATCY 1 cut(s) 943
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 2 cut(s) 150, 1111
SapI GCTCTTC 2 cut(s) 308, 783
SaqAI TTAA 3 cut(s) 339, 678, 1218
SatI GCNGC 1 cut(s) 1170
Sau3AI GATC 6 cut(s) 466, 594, 742, 943, 1015, 1084
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 2 cut(s) 93, 188
ScrFI CCNGG 3 cut(s) 108, 234, 435
SduI GDGCHC 4 cut(s) 108, 150, 320, 1111
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 5 cut(s) 684, 694, 763, 858, 1216
SfcI CTRYAG 2 cut(s) 960, 1204
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
SspMI CTAG 5 cut(s) 11, 239, 351, 698, 1127
SstI GAGCTC 2 cut(s) 150, 1111
StyD4I CCNGG 3 cut(s) 106, 232, 433
TaaI ACNGT 4 cut(s) 37, 534, 631, 656
TaqI TCGA 4 cut(s) 54, 93, 174, 296
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 2 cut(s) 208, 716
Tru1I TTAA 3 cut(s) 339, 678, 1218
Tru9I TTAA 3 cut(s) 339, 678, 1218
TscAI CASTG 4 cut(s) 253, 270, 539, 969
TseFI GTSAC 2 cut(s) 796, 919
TseI GCWGC 1 cut(s) 1169
Tsp45I GTSAC 2 cut(s) 796, 919
TspDTI ATGAA 2 cut(s) 650, 1244
TspGWI ACGGA 2 cut(s) 499, 1043
TspRI CASTG 4 cut(s) 253, 270, 539, 969
Van91I CCANNNNNTGG 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 1 cut(s) 673
XbaI TCTAGA 1 cut(s) 238
XceI RCATGY 2 cut(s) 337, 457
XmnI GAANNNNTTC 1 cut(s) 1049
XspI CTAG 5 cut(s) 11, 239, 351, 698, 1127
ZrmI AGTACT 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.