RchiOBHm_Chr5g0001321

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005179
Physical Location & Seq
Reverse (-)
702236 .. 702937
702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28277

Sequence Viewer

Length: 702 bp
ATGCTCGCTATGAAACCTACCTACATCAACGCTCTATCAAGCTTGTGCGACAAAACAAATGGTGCCGATATAGGCATCGTTGGACAACTACTTGGAGAAGATTATAGACTGGACAACAACTACATGACTGCCACATTAGGAATTGGAGGCCAAGAACTGATGAAAGATACTTTGTACATGAAGTATGCTTTTAGTGAAGCTGGATTGTACCACGAGGCAATGCTGACTAAGAAGGTTGCTCATTTAGACGTGAAGAGGAGAAAGGAGTTTGTTCAGCTAATTTTACGGAAAATGCTCTCACTTAGGAACAGAAGGATTACCATATTCGGAGTCACGTATAAGAGCCGGGTTCTCGATCTCACAAGATCACCCGCGATTAGCGTATGCAAAGCCCTACTGAGAGAGGGTGCTTTCCTCCACATATATGAGCCGTCAGTAGATGAGCCAAGAATCCGGCAACTTCTTGGTAATCCTGAAGCAGTGGACATTTTCGATGATGATCCTATAGAGGGATGTACTGGCACACATGCAGTTGCATTTTTGGTGCCAATGCACCAGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGAACAACCAGGAGGTCGATATTTGTTTATGGGTTGGCACATGAATGTCAATTTCGACATTCTGAGACAGATGGGCTTCCTAGTTTATATTAGTGGAAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

233

Amino Acids

26.45

Weight (kDa)

8.37

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh PF00984 1 - 72 2.7e-10 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 108 - 198 1.8e-09 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 544
AccII CGCG 1 cut(s) 374
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 3 cut(s) 176, 209, 517
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 2 cut(s) 575, 586
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 4 cut(s) 42, 200, 277, 559
AluI AGCT 4 cut(s) 42, 200, 277, 559
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 1 cut(s) 494
AoxI GGCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 360
BanI GGYRCC 2 cut(s) 62, 544
BauI CACGAG 1 cut(s) 212
BccI CCATC 1 cut(s) 661
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 504
Bme1390I CCNGG 2 cut(s) 347, 606
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 64, 546
BmrFI CCNGG 2 cut(s) 347, 606
BmsI GCATC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 498
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 2 cut(s) 114, 523
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 606
BseGI GGATG 1 cut(s) 518
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 389, 650
BseNI ACTGG 2 cut(s) 114, 523
BseRI GAGGAG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 2 cut(s) 62, 544
BsiSI CCGG 2 cut(s) 346, 454
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 655
BsnI GGCC 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 3 cut(s) 355, 365, 499
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 390, 651
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 64, 546
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 2 cut(s) 62, 544
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 2 cut(s) 114, 523
BssMI GATC 3 cut(s) 355, 365, 499
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 606
Bst6I CTCTTC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 228, 302, 398, 659, 699
BstF5I GGATG 1 cut(s) 518
BstFNI CGCG 1 cut(s) 374
BstKTI GATC 3 cut(s) 358, 368, 502
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 3 cut(s) 355, 365, 499
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 345, 604
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 374
BsuRI GGCC 1 cut(s) 150
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 518
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 175, 208, 516
CviAII CATG 4 cut(s) 124, 178, 527, 637
CviQI GTAC 3 cut(s) 175, 208, 516
DdeI CTNAG 5 cut(s) 228, 302, 398, 659, 699
DpnI GATC 3 cut(s) 357, 367, 501
DpnII GATC 3 cut(s) 355, 365, 499
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 604
FaeI CATG 4 cut(s) 127, 181, 530, 640
FatI CATG 4 cut(s) 123, 177, 526, 636
FauI CCCGC 1 cut(s) 379
FokI GGATG 1 cut(s) 525
FspBI CTAG 1 cut(s) 677
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 346, 454
Hin1II CATG 4 cut(s) 127, 181, 530, 640
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 2 cut(s) 330, 450
HpaII CCGG 2 cut(s) 346, 454
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 2 cut(s) 329, 660
Hpy188III TCNNGA 2 cut(s) 353, 473
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 2 cut(s) 226, 306
HpyCH4IV ACGT 2 cut(s) 249, 335
HpyCH4V TGCA 4 cut(s) 387, 530, 536, 553
HpyF3I CTNAG 5 cut(s) 228, 302, 398, 659, 699
HpySE526I ACGT 2 cut(s) 249, 335
Hsp92II CATG 4 cut(s) 127, 181, 530, 640
Kzo9I GATC 3 cut(s) 355, 365, 499
LpnPI CCDG 9 cut(s) 95, 186, 359, 467, 486, 504, 569, 591, 618
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 677
MaeII ACGT 2 cut(s) 249, 335
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 357, 367, 501
MboI GATC 3 cut(s) 355, 365, 499
MboII GAAGA 2 cut(s) 110, 265
MluCI AATT 5 cut(s) 141, 279, 563, 568, 646
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 7 cut(s) 140, 208, 249, 397, 425, 502, 602
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 2 cut(s) 423, 639
MspI CCGG 2 cut(s) 346, 454
MspR9I CCNGG 2 cut(s) 347, 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 374
NciI CCSGG 1 cut(s) 347
NdeII GATC 3 cut(s) 355, 365, 499
NlaIII CATG 4 cut(s) 127, 181, 530, 640
NlaIV GGNNCC 2 cut(s) 64, 546
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 530
PfeI GAWTC 1 cut(s) 450
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 64, 546
RsaI GTAC 3 cut(s) 176, 209, 517
RsaNI GTAC 3 cut(s) 175, 208, 516
RseI CAYNNNNRTG 2 cut(s) 423, 639
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 3 cut(s) 355, 365, 499
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 347, 606
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 423, 639
Sse9I AATT 5 cut(s) 141, 279, 563, 568, 646
SsiI CCGC 1 cut(s) 372
SspI AATATT 1 cut(s) 582
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 2 cut(s) 345, 604
TaiI ACGT 2 cut(s) 252, 338
TaqI TCGA 4 cut(s) 354, 492, 613, 651
TasI AATT 5 cut(s) 141, 279, 563, 568, 646
TatI WGTACW 2 cut(s) 174, 515
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 26, 176, 194, 653
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 486
XceI RCATGY 1 cut(s) 530
XspI CTAG 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.