Rh5BG012900

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005179
Physical Location & Seq
Reverse (-)
972760 .. 974283
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG012900.1

Sequence Viewer

Length: 1524 bp
ATGGCAGATCAGGGTCCTCTTAATGTTGTTCCTTTAGCGGTCATTCTTCCGGACCCAAATTTAGACGTTGTTCCTTTAGCAGTCATTCTTCCGGGTCAAAACATCCTTCCTCCAAATAATGTTCTTCCTCCGAATTTCGATCATATCACCAACGTATGTTGCATCGGTGCCACCCAATCCAGCGTTATGCACATGGCAGTAATAGCAGAGCGATACCCAAGACTTAACGTCGTTGTGGCAGATTTCAATCAACAACTAATCGAAGACTGGAATGAGGGGAACATAGATTTTGAAGAGGAAGGTATGTTCGAGTTGTTAGAAAATCTTGCCGGTGCTAATCTACAGTTTGTCGATGATGTGAACGAAGCAATCGTAGATGCCCAGATGATTTTTATTGGAGTTGAAATACCTATCAAGGTAATTGGCTGTCGTGAAGGATTTGACCTAAGGCTATGGGTAAAAGCCATAAGGAGGATTGTGAAAGTGGCACAAACGTCAAAGATTATCGTAGAAAGATCGACCATGCCAATTGATTCTTTCGATATGACAACCACATTATTAGCCCGAAGACCTCCGCCTCCTTATGGCCAACCTGCTGTGCAATTTGCCGTTATGTCCAATCCGGACTTTTCCTCTCCGGGCTCTAGACTTCAAGACCTGAGGAACCCAGATAGAGTTGTTATTGGGTTAAAATCAAATGTAGGGGACGTTATTCCATTGCAACAGTTGTACATGGGGTTAATTCAAAACCCAGAAGCAATCCGCGTAGTCCCAATGCCTAATGCTGTTAACGTTGAGATAGCAAAACTTGCCACCAATGCAATGCTCGCTATGAAACTTACCTACATCAACGCTCTATCAAGCTTGTGCGACAAAACAAATGGTGCCGATATAGGCATCGTTGGACAACTACTTGGAGAAGATTATAGACTGGACAACAACTACATGACTGCCACATTAGGAATTGGAGGCCAAGAACTGATGAAAGATACTTTGTACATGAAGTATGCTTTTAGTGAAGCTGGATTGTACCACGAGGCAATGCTGACTAAGAAGGTTGTTCATTTAGACGTGAAGAGGAGAAAGGAGTTTGTTCAGCTAATGTTACGGAAAATGCTCTCACTTAGGAACAGAAGGATTACCATATTCGGAGTCACGTATAAGAGCCGGGTTCTCGATCTCACAAGATCACCCGCGATTAGCGTATGCAAAGCCCTACTGAGAGAGGGTGCTTTCCTCCACATATATGAGCCGTCAGTAGATGAGCCAAGAATCCGGCAACTTCTTGGTAATCCTGAAGCAGTGGACATTTTCGATGATGATCCTATAGAGGCATGTAATGGCGCACATGCAGTTGCATTTTTGGTGCCAATGCACCAGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGACCAACCAGGAGGTCGATATTTGTTTATGGGCTGGCACATGAATGTCAATTTCGACATTCTGAGGCAGATGGGCTTCCTAGTTTATATTAGTGGAAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

507

Amino Acids

56.59

Weight (kDa)

5.41

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 51 - 232 3.4e-32 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 265 - 346 1.2e-15 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 382 - 472 2.7e-10 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccB1I GGYRCC 3 cut(s) 167, 884, 1366
AccII CGCG 2 cut(s) 765, 1196
AccIII TCCGGA 2 cut(s) 49, 622
AciI CCGC 4 cut(s) 38, 575, 763, 1194
AclI AACGTT 1 cut(s) 792
AclWI GGATC 1 cut(s) 1316
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 2 cut(s) 58, 133
AcuI CTGAAG 1 cut(s) 1317
AfaI GTAC 3 cut(s) 731, 998, 1031
AfiI CCNNNNNNNGG 2 cut(s) 471, 584
AgsI TTSAA 7 cut(s) 247, 293, 404, 653, 746, 1397, 1408
AhdI GACNNNNNGTC 1 cut(s) 227
AjiI CACGTC 1 cut(s) 1072
AjnI CCWGG 1 cut(s) 1426
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 4 cut(s) 864, 1022, 1099, 1381
AluI AGCT 4 cut(s) 864, 1022, 1099, 1381
AlwI GGATC 1 cut(s) 1316
Aor13HI TCCGGA 2 cut(s) 49, 622
AoxI GGCC 2 cut(s) 586, 970
ApoI RAATTY 2 cut(s) 58, 133
AspLEI GCGC 1 cut(s) 1346
AspS9I GGNCC 2 cut(s) 14, 52
AsuC2I CCSGG 3 cut(s) 93, 639, 1169
AsuHPI GGTGA 2 cut(s) 139, 1182
AvaII GGWCC 2 cut(s) 14, 52
AxyI CCTNAGG 2 cut(s) 446, 659
BalI TGGCCA 1 cut(s) 588
BanI GGYRCC 3 cut(s) 167, 884, 1366
BanII GRGCYC 1 cut(s) 644
BauI CACGAG 1 cut(s) 1034
BbsI GAAGAC 2 cut(s) 270, 574
BccI CCATC 1 cut(s) 1483
BceAI ACGGC 2 cut(s) 593, 1237
BciT130I CCWGG 1 cut(s) 1428
BcnI CCSGG 3 cut(s) 93, 639, 1169
BfaI CTAG 2 cut(s) 645, 1499
BfmI CTRYAG 2 cut(s) 341, 1326
BfuAI ACCTGC 1 cut(s) 601
Bme1390I CCNGG 4 cut(s) 93, 639, 1169, 1428
Bme18I GGWCC 2 cut(s) 14, 52
BmeRI GACNNNNNGTC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 1072
BmgT120I GGNCC 2 cut(s) 14, 52
BmiI GGNNCC 6 cut(s) 15, 54, 169, 665, 886, 1368
BmrFI CCNGG 4 cut(s) 93, 639, 1169, 1428
BmsI GCATC 3 cut(s) 171, 367, 906
BpiI GAAGAC 2 cut(s) 270, 574
BpuMI CCSGG 3 cut(s) 93, 639, 1169
BsaAI YACGTR 1 cut(s) 1158
BsaBI GATNNNNATC 2 cut(s) 246, 1320
BsaWI WCCGGW 2 cut(s) 49, 622
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 584
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 272, 936
Bse21I CCTNAGG 2 cut(s) 446, 659
Bse3DI GCAATG 3 cut(s) 716, 828, 1047
Bse8I GATNNNNATC 2 cut(s) 246, 1320
BseAI TCCGGA 2 cut(s) 49, 622
BseBI CCWGG 1 cut(s) 1428
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 2 cut(s) 246, 1320
BseLI CCNNNNNNNGG 2 cut(s) 471, 584
BseMI GCAATG 3 cut(s) 716, 828, 1047
BseMII CTCAG 3 cut(s) 650, 1211, 1472
BseNI ACTGG 2 cut(s) 272, 936
BseRI GAGGAG 1 cut(s) 1093
Bsh1236I CGCG 2 cut(s) 765, 1196
BshFI GGCC 2 cut(s) 588, 972
BshNI GGYRCC 3 cut(s) 167, 884, 1366
BsiSI CCGG 7 cut(s) 50, 92, 330, 623, 638, 1168, 1276
BslFI GGGAC 2 cut(s) 719, 755
BslI CCNNNNNNNGG 2 cut(s) 471, 584
BsmFI GGGAC 2 cut(s) 719, 755
BsnI GGCC 2 cut(s) 588, 972
Bsp1286I GDGCHC 1 cut(s) 644
Bsp13I TCCGGA 2 cut(s) 49, 622
Bsp1407I TGTACA 2 cut(s) 729, 996
Bsp143I GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
BspACI CCGC 4 cut(s) 38, 575, 763, 1194
BspANI GGCC 2 cut(s) 588, 972
BspCNI CTCAG 3 cut(s) 651, 1212, 1473
BspEI TCCGGA 2 cut(s) 49, 622
BspFNI CGCG 2 cut(s) 765, 1196
BspLI GGNNCC 6 cut(s) 15, 54, 169, 665, 886, 1368
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 1 cut(s) 1316
BspT107I GGYRCC 3 cut(s) 167, 884, 1366
BsrDI GCAATG 3 cut(s) 716, 828, 1047
BsrFI RCCGGY 1 cut(s) 329
BsrGI TGTACA 2 cut(s) 729, 996
BsrI ACTGG 2 cut(s) 272, 936
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
BssSI CACGAG 1 cut(s) 1034
Bst2BI CACGAG 1 cut(s) 1034
Bst2UI CCWGG 1 cut(s) 1428
Bst4CI ACNGT 2 cut(s) 345, 726
Bst6I CTCTTC 2 cut(s) 288, 1070
BstAPI GCANNNNNTGC 1 cut(s) 809
BstAUI TGTACA 2 cut(s) 729, 996
BstBAI YACGTR 1 cut(s) 1158
BstC8I GCNNGC 2 cut(s) 828, 1454
BstDEI CTNAG 7 cut(s) 446, 659, 1050, 1124, 1220, 1481, 1521
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 2 cut(s) 765, 1196
BstHHI GCGC 1 cut(s) 1346
BstKTI GATC 6 cut(s) 10, 142, 518, 1180, 1190, 1324
BstMBI GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
BstMWI GCNNNNNNNGC 4 cut(s) 203, 809, 818, 827
BstNI CCWGG 1 cut(s) 1428
BstNSI RCATGY 2 cut(s) 1338, 1352
BstSCI CCNGG 4 cut(s) 91, 637, 1167, 1426
BstSFI CTRYAG 2 cut(s) 341, 1326
BstUI CGCG 2 cut(s) 765, 1196
BstV2I GAAGAC 2 cut(s) 270, 574
Bsu36I CCTNAGG 2 cut(s) 446, 659
BsuRI GGCC 2 cut(s) 588, 972
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 1308
BtsIMutI CAGTG 1 cut(s) 1308
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 828, 1454
CfoI GCGC 1 cut(s) 1346
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 14, 52
Csp6I GTAC 3 cut(s) 730, 997, 1030
CviAII CATG 8 cut(s) 193, 523, 733, 946, 1000, 1335, 1349, 1459
CviQI GTAC 3 cut(s) 730, 997, 1030
DdeI CTNAG 7 cut(s) 446, 659, 1050, 1124, 1220, 1481, 1521
DpnI GATC 6 cut(s) 9, 141, 517, 1179, 1189, 1323
DpnII GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
DriI GACNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 288, 1070
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 288, 1070
EciI GGCGGA 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 14, 52
Eco57I CTGAAG 1 cut(s) 1317
Eco81I CCTNAGG 2 cut(s) 446, 659
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 1426
EcoT38I GRGCYC 1 cut(s) 644
FaeI CATG 8 cut(s) 196, 526, 736, 949, 1003, 1338, 1352, 1462
FaqI GGGAC 2 cut(s) 719, 755
FatI CATG 8 cut(s) 192, 522, 732, 945, 999, 1334, 1348, 1458
FauI CCCGC 1 cut(s) 1201
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 644
FspBI CTAG 2 cut(s) 645, 1499
GlaI GCGC 1 cut(s) 1345
HaeIII GGCC 2 cut(s) 588, 972
HapII CCGG 7 cut(s) 50, 92, 330, 623, 638, 1168, 1276
HhaI GCGC 1 cut(s) 1346
Hin1II CATG 8 cut(s) 196, 526, 736, 949, 1003, 1338, 1352, 1462
Hin6I GCGC 1 cut(s) 1344
HinP1I GCGC 1 cut(s) 1344
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 862
HinfI GANTC 3 cut(s) 533, 1152, 1272
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 7 cut(s) 50, 92, 330, 623, 638, 1168, 1276
HphI GGTGA 2 cut(s) 139, 1182
Hpy166II GTNNAC 3 cut(s) 361, 790, 1306
Hpy188I TCNGA 3 cut(s) 132, 1151, 1482
Hpy188III TCNNGA 7 cut(s) 50, 431, 623, 645, 653, 1175, 1295
Hpy8I GTNNAC 3 cut(s) 361, 790, 1306
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 116, 293, 428, 1048, 1128
HpyCH4III ACNGT 2 cut(s) 345, 726
HpyCH4IV ACGT 8 cut(s) 66, 153, 228, 494, 708, 792, 1071, 1157
HpyCH4V TGCA 9 cut(s) 162, 190, 601, 721, 821, 1209, 1352, 1358, 1375
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 809, 818, 827
HpyF3I CTNAG 7 cut(s) 446, 659, 1050, 1124, 1220, 1481, 1521
HpySE526I ACGT 8 cut(s) 66, 153, 228, 494, 708, 792, 1071, 1157
Hsp92II CATG 8 cut(s) 196, 526, 736, 949, 1003, 1338, 1352, 1462
HspAI GCGC 1 cut(s) 1344
Kpn2I TCCGGA 2 cut(s) 49, 622
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
LweI GCATC 3 cut(s) 171, 367, 906
MaeI CTAG 2 cut(s) 645, 1499
MaeII ACGT 8 cut(s) 66, 153, 228, 494, 708, 792, 1071, 1157
MaeIII GTNAC 2 cut(s) 1104, 1153
MalI GATC 6 cut(s) 9, 141, 517, 1179, 1189, 1323
MboI GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
MboII GAAGA 8 cut(s) 38, 80, 116, 275, 305, 579, 932, 1087
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 588
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 1 cut(s) 1161
MmeI TCCRAC 1 cut(s) 883
Mox20I TGGCCA 1 cut(s) 588
MroI TCCGGA 2 cut(s) 49, 622
MscI TGGCCA 1 cut(s) 588
MseI TTAA 6 cut(s) 21, 225, 689, 740, 789, 1389
MslI CAYNNNNRTG 2 cut(s) 1245, 1461
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 7 cut(s) 50, 92, 330, 623, 638, 1168, 1276
MspR9I CCNGG 4 cut(s) 93, 639, 1169, 1428
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 1428
MvnI CGCG 2 cut(s) 765, 1196
MwoI GCNNNNNNNGC 4 cut(s) 203, 809, 818, 827
NciI CCSGG 3 cut(s) 93, 639, 1169
NdeII GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
NlaIII CATG 8 cut(s) 196, 526, 736, 949, 1003, 1338, 1352, 1462
NlaIV GGNNCC 6 cut(s) 15, 54, 169, 665, 886, 1368
NmuCI GTSAC 1 cut(s) 1153
NspI RCATGY 2 cut(s) 1338, 1352
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 2 cut(s) 533, 1272
PleI GAGTC 1 cut(s) 1160
PpsI GAGTC 1 cut(s) 1160
Ppu21I YACGTR 1 cut(s) 1158
PpuMI RGGWCCY 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 1426
PspGI CCWGG 1 cut(s) 1426
PspN4I GGNNCC 6 cut(s) 15, 54, 169, 665, 886, 1368
PspPI GGNCC 2 cut(s) 14, 52
PspPPI RGGWCCY 1 cut(s) 14
RsaI GTAC 3 cut(s) 731, 998, 1031
RsaNI GTAC 3 cut(s) 730, 997, 1030
RseI CAYNNNNRTG 2 cut(s) 1245, 1461
SaqAI TTAA 6 cut(s) 21, 225, 689, 740, 789, 1389
Sau3AI GATC 6 cut(s) 7, 139, 515, 1177, 1187, 1321
Sau96I GGNCC 2 cut(s) 14, 52
SchI GAGTC 1 cut(s) 1161
ScrFI CCNGG 4 cut(s) 93, 639, 1169, 1428
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 3 cut(s) 171, 367, 906
SfcI CTRYAG 2 cut(s) 341, 1326
SinI GGWCC 2 cut(s) 14, 52
SmiMI CAYNNNNRTG 2 cut(s) 1245, 1461
SsiI CCGC 4 cut(s) 38, 575, 763, 1194
SspI AATATT 1 cut(s) 1404
SspMI CTAG 2 cut(s) 645, 1499
StyD4I CCNGG 4 cut(s) 91, 637, 1167, 1426
TaaI ACNGT 2 cut(s) 345, 726
TaiI ACGT 8 cut(s) 69, 156, 231, 497, 711, 795, 1074, 1160
TatI WGTACW 2 cut(s) 729, 996
TfiI GAWTC 2 cut(s) 533, 1272
Tru1I TTAA 6 cut(s) 21, 225, 689, 740, 789, 1389
Tru9I TTAA 6 cut(s) 21, 225, 689, 740, 789, 1389
TscAI CASTG 1 cut(s) 1308
TseFI GTSAC 1 cut(s) 1153
Tsp45I GTSAC 1 cut(s) 1153
TspDTI ATGAA 5 cut(s) 848, 998, 1016, 1052, 1475
TspGWI ACGGA 1 cut(s) 1123
TspRI CASTG 1 cut(s) 1308
VpaK11BI GGWCC 2 cut(s) 14, 52
XapI RAATTY 2 cut(s) 58, 133
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 2 cut(s) 1338, 1352
XspI CTAG 2 cut(s) 645, 1499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.