Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Forward (+)

55803021 .. 55804278

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0389800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGAGCGCTCTCTCTTCTTCTTCGTCGTCTTCTTCTTCAAGAAAGCTTCTGGTGGCGTCAGCGTTGGCTACGGTGGTCCTCTTACAGCTCCTTCTGCCTACATGTGCTACCGGAGTCGGCGTCGTAACAAGCAACTCCGGGCAACAAACCCACCGCCATCACAGTTGCGACGCAATTTCACGGTCGAACCACAAACTACGTTCTTTGTGCATTCATTTCCAGTTAACCCAACACCTTCCGACGCCGCCGCCGTCTCCGTCCGATTATCAGATTGATCCAAGATACGGTGTCGAGAAGAGACGGGTCCCTTCCGGACCAAACCCTCTTCACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

112

Amino Acids

12.05

Weight (kDa)

10.05

Isoelectric Point (pI)

70.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	3 cut(s)	157, 248, 251
AclWI	GGATC	1 cut(s)	272
AcyI	GRCGYC	3 cut(s)	59, 123, 245
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	2 cut(s)	49, 91
AluI	AGCT	2 cut(s)	49, 91
Alw26I	GTCTC	2 cut(s)	261, 295
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	314
Aor51HI	AGCGCT	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	79, 307, 317
AsuC2I	CCSGG	1 cut(s)	142
AvaII	GGWCC	3 cut(s)	79, 307, 317
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	261, 295
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	2 cut(s)	248, 251
BlsI	GCNGC	2 cut(s)	249, 252
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	3 cut(s)	79, 307, 317
BmgT120I	GGNCC	3 cut(s)	79, 307, 317
BmiI	GGNNCC	2 cut(s)	308, 309
BmrFI	CCNGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	3 cut(s)	59, 123, 245
BsaWI	WCCGGW	2 cut(s)	113, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	114, 141, 315
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	261, 295
BsmBI	CGTCTC	2 cut(s)	261, 295
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	3 cut(s)	157, 248, 251
BspEI	TCCGGA	1 cut(s)	314
BspLI	GGNNCC	2 cut(s)	308, 309
BspPI	GGATC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	3 cut(s)	59, 123, 245
Bst4CI	ACNGT	4 cut(s)	76, 167, 186, 290
Bst6I	CTCTTC	3 cut(s)	22, 293, 333
BstACI	GRCGYC	3 cut(s)	59, 123, 245
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	261, 295
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	79, 307, 317
CseI	GACGC	4 cut(s)	48, 112, 182, 253
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	3 cut(s)	49, 71, 91
CviKI_1	RGCY	3 cut(s)	49, 71, 91
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eam1104I	CTCTTC	3 cut(s)	22, 293, 333
EarI	CTCTTC	3 cut(s)	22, 293, 333
Eco47I	GGWCC	3 cut(s)	79, 307, 317
Eco47III	AGCGCT	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	307
Esp3I	CGTCTC	2 cut(s)	261, 295
FaeI	CATG	1 cut(s)	108
FaiI	YATR	1 cut(s)	106
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	248, 251
Fsp4HI	GCNGC	2 cut(s)	248, 251
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	248, 251
HaeII	RGCGCY	1 cut(s)	12
HapII	CCGG	3 cut(s)	114, 141, 315
HgaI	GACGC	4 cut(s)	48, 112, 182, 253
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	3 cut(s)	59, 123, 245
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	117
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	3 cut(s)	114, 141, 315
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	243, 265, 273
Hpy188III	TCNNGA	3 cut(s)	42, 295, 315
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	4 cut(s)	31, 128, 176, 247
HpyAV	CCTTC	3 cut(s)	104, 248, 321
HpyCH4III	ACNGT	4 cut(s)	76, 167, 186, 290
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	202
Hsp92I	GRCGYC	3 cut(s)	59, 123, 245
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	9
KflI	GGGWCCC	1 cut(s)	307
Kpn2I	TCCGGA	1 cut(s)	314
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	5 cut(s)	38, 127, 154, 236, 328
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	9 cut(s)	9, 12, 15, 16, 24, 27, 30, 310, 320
MluCI	AATT	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	2 cut(s)	92, 336
MroI	TCCGGA	1 cut(s)	314
MseI	TTAA	1 cut(s)	227
MspI	CCGG	3 cut(s)	114, 141, 315
MspR9I	CCNGG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	2 cut(s)	308, 309
NspI	RCATGY	1 cut(s)	108
PciI	ACATGT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PctI	GAATGC	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	249, 252
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	308, 309
PspPI	GGNCC	3 cut(s)	79, 307, 317
PspPPI	RGGWCCY	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	248, 251
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	3 cut(s)	79, 307, 317
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	4 cut(s)	51, 93, 205, 240
SinI	GGWCC	3 cut(s)	79, 307, 317
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	3 cut(s)	157, 248, 251
StyD4I	CCNGG	1 cut(s)	140
TaaI	ACNGT	4 cut(s)	76, 167, 186, 290
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	188, 294
TasI	AATT	1 cut(s)	177
TauI	GCSGC	2 cut(s)	250, 253
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	17, 206
TspGWI	ACGGA	1 cut(s)	249
VpaK11BI	GGWCC	3 cut(s)	79, 307, 317
XceI	RCATGY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.