Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01092

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Reverse (-)

20443 .. 22092

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAGCACTGGAACTATGAATTATATGGGTGAAGATTTCAATGAAGATTTGGATCAGTTATGCTGGGATTTTGAGTATGCGGTAATGGCTCAGTATCACCCGGAGATTATGTTCAAGATTGTAGATATGGATCACGGTTTGATTAAGAAATGGGAAGGGGGTGAAGTAATATTCTATGAGCCTGAGTTTGAGGAGTTGATTGGTAATGTTAGGGGTAAGAACTTTAATGAGGCTGCTATTGTCTTTGTTGCTGTGGATGTACCCGTTGGTCCAGAATGCCGTTTGGACTTGAGTGATTGGGATGATGCTATTCAAAAGATAATAGAAGCGTCCACTACCAGAAAGCTTTCGATAATAGTTGAGAAGTCTATGCCTTTCAATCTACGTGACTGGATTGAGGATATTATACGATACCGAAATCCACAGGGCTTGAAGTTTTCATTGAAAGACCCGAAGAGGGTGGTTATTGCGAAAAATCATGGCCATGGAGAGGATGTGCTTAGGTTACAACAACTTTATCCTCAATATGTTCCTGTAGAAAGGATTCTAATTGCTGATGATCACAAGACTGTTGAGATGGGGAAACTTTGGAGTAGTGTATATCGCCTATATCCTGTCATGATGCACACATTTGGGAATGTGATGCCTAGCATTTGTGGTAGCATAGGTGCTGATTCAAATGATGTGAGAAGAAATATTGGATGTGCAGATTCTGAAAGCTATATGGATTCTTCTATTGGCTTTGGAGGACCAGTAATCCAGGATATTTCTTATTTGAAGTCTGTTCTACACCGTGATGAATTGAAGTTGGAGTCAGACATGCTTAATCAGATCATCAAGTTTGTAATGTTGATGTTAAATAAATTGATTTCTGTGACAGGGCAGACAATTGCTGTGTTTGGTTTCTCATATAAAAAGGACACAGCCGATATAAGAAATTTGCCCTCAATTTACATATGTAAAGCTCTCTTGGAAGAAGGCTCAAAGGTTAGGATTTTTTATCCTAGAGTGAATGAGAACAAGATCAGGAATTGTATTGATTCTAAAGTGAAAAAGAACAAAATCAGGAATCGTTTTCCAAAAACAGTTGGTTCAAAACTGTGTGTTTGTACTGCAATGCGCGAAGCATGGTCTAAGGCAGATGATTTTGTGTTTTTGGTTAACTGGGATGAATTTCAACAGATTGATTTTGAAGCTATGTATAGAGAAATGAAAGGCTGGCCACGATTCATGTTTGTGGGTTGCGAATCAGGGTTAGACTGCAATCGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

424

Amino Acids

48.91

Weight (kDa)

5.57

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh_N	PF03721	39 - 141	2.4e-07	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh_C	PF03720	298 - 405	1.5e-16	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1122
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	60, 138
AcoI	YGGCCR	2 cut(s)	481, 1220
AcsI	RAATTY	2 cut(s)	937, 1172
AfaI	GTAC	2 cut(s)	261, 1111
AfiI	CCNNNNNNNGG	2 cut(s)	457, 490
AjnI	CCWGG	1 cut(s)	759
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	346, 720, 965, 1196
AluI	AGCT	4 cut(s)	346, 720, 965, 1196
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	60, 138
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	2 cut(s)	481, 1220
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	937, 1172
Asp700I	GAANNNNTTC	2 cut(s)	346, 543
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	2 cut(s)	269, 749
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	41, 89, 173
AvaII	GGWCC	2 cut(s)	269, 749
BalI	TGGCCA	2 cut(s)	483, 1222
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	761
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	2 cut(s)	648, 1005
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	101, 761
Bme18I	GGWCC	2 cut(s)	269, 749
BmgT120I	GGNCC	2 cut(s)	269, 749
BmrFI	CCNGG	2 cut(s)	101, 761
BmrI	ACTGGG	1 cut(s)	1174
BmsI	GCATC	3 cut(s)	295, 612, 633
BmuI	ACTGGG	1 cut(s)	1174
Bpu10I	CCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	386
BsaBI	GATNNNNATC	2 cut(s)	51, 129
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 480, 510, 738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 490
Bse1I	ACTGG	4 cut(s)	13, 395, 752, 1169
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	2 cut(s)	51, 129
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	5 cut(s)	262, 307, 499, 707, 1174
BseJI	GATNNNNATC	2 cut(s)	51, 129
BseLI	CCNNNNNNNGG	2 cut(s)	457, 490
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	2 cut(s)	104, 174
BseNI	ACTGG	4 cut(s)	13, 395, 752, 1169
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	1122
BshFI	GGCC	2 cut(s)	483, 1222
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	457, 490
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	483, 1222
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	52, 130, 559, 831, 1023
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	483, 1222
BspCNI	CTCAG	2 cut(s)	103, 175
BspFNI	CGCG	1 cut(s)	1122
BspHI	TCATGA	1 cut(s)	618
BspPI	GGATC	2 cut(s)	60, 138
BsrDI	GCAATG	1 cut(s)	1122
BsrI	ACTGG	4 cut(s)	13, 395, 752, 1169
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	5 cut(s)	52, 130, 559, 831, 1023
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	5 cut(s)	137, 571, 794, 1087, 1101
Bst6I	CTCTTC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	1220
BstDEI	CTNAG	4 cut(s)	90, 183, 500, 1134
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	5 cut(s)	262, 307, 499, 707, 1174
BstFNI	CGCG	1 cut(s)	1122
BstHHI	GCGC	1 cut(s)	1122
BstKTI	GATC	5 cut(s)	55, 133, 562, 834, 1026
BstMBI	GATC	5 cut(s)	52, 130, 559, 831, 1023
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	99, 759
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	1122
BstV1I	GCAGC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	483, 1222
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	5 cut(s)	262, 307, 499, 707, 1174
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	1220
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	1 cut(s)	1122
Cfr13I	GGNCC	2 cut(s)	269, 749
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	260, 1110
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	6 cut(s)	479, 485, 619, 820, 1128, 1231
CviQI	GTAC	2 cut(s)	260, 1110
DdeI	CTNAG	4 cut(s)	90, 183, 500, 1134
DpnI	GATC	5 cut(s)	54, 132, 561, 833, 1025
DpnII	GATC	5 cut(s)	52, 130, 559, 831, 1023
EaeI	YGGCCR	2 cut(s)	481, 1220
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	269, 749
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	6 cut(s)	482, 488, 622, 823, 1131, 1234
FatI	CATG	6 cut(s)	478, 484, 618, 819, 1127, 1230
FauNDI	CATATG	1 cut(s)	956
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	5 cut(s)	269, 314, 506, 714, 1181
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	648, 1005
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	483, 1222
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	1122
Hin1II	CATG	6 cut(s)	482, 488, 622, 823, 1131, 1234
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HincII	GTYRAC	1 cut(s)	1162
HindII	GTYRAC	1 cut(s)	1162
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	9 cut(s)	544, 674, 710, 728, 812, 1040, 1069, 1227, 1247
HpaI	GTTAAC	1 cut(s)	1162
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	41, 89, 173
Hpy166II	GTNNAC	2 cut(s)	333, 1162
Hpy188I	TCNGA	3 cut(s)	715, 817, 831
Hpy188III	TCNNGA	5 cut(s)	115, 272, 619, 1027, 1066
Hpy8I	GTNNAC	2 cut(s)	333, 1162
HpyAV	CCTTC	2 cut(s)	149, 971
HpyCH4III	ACNGT	5 cut(s)	137, 571, 794, 1087, 1101
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	4 cut(s)	625, 707, 1115, 1263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	4 cut(s)	90, 183, 500, 1134
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	6 cut(s)	482, 488, 622, 823, 1131, 1234
HspAI	GCGC	1 cut(s)	1120
Ksp22I	TGATCA	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	1162
Kzo9I	GATC	5 cut(s)	52, 130, 559, 831, 1023
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	295, 612, 633
MaeI	CTAG	2 cut(s)	648, 1005
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	386, 504, 874
MalI	GATC	5 cut(s)	54, 132, 561, 833, 1025
MboI	GATC	5 cut(s)	52, 130, 559, 831, 1023
MboII	GAAGA	6 cut(s)	44, 56, 466, 702, 723, 986
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	2 cut(s)	483, 1222
MluCI	AATT	9 cut(s)	19, 549, 800, 863, 888, 937, 948, 1030, 1172
MluNI	TGGCCA	2 cut(s)	483, 1222
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	8 cut(s)	184, 223, 391, 450, 484, 531, 740, 955
Mox20I	TGGCCA	2 cut(s)	483, 1222
MroXI	GAANNNNTTC	2 cut(s)	346, 543
MscI	TGGCCA	2 cut(s)	483, 1222
MseI	TTAA	5 cut(s)	144, 225, 825, 857, 1161
MslI	CAYNNNNRTG	3 cut(s)	483, 795, 1235
Msp20I	TGGCCA	2 cut(s)	483, 1222
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	101, 761
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	1122
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	484
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	5 cut(s)	52, 130, 559, 831, 1023
NlaIII	CATG	6 cut(s)	482, 488, 622, 823, 1131, 1234
NmuCI	GTSAC	2 cut(s)	386, 874
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	1 cut(s)	618
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	2 cut(s)	346, 543
PfeI	GAWTC	8 cut(s)	544, 674, 710, 728, 1040, 1069, 1227, 1247
PfoI	TCCNGGA	1 cut(s)	759
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	759
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	759
PspPI	GGNCC	2 cut(s)	269, 749
PstNI	CAGNNNCTG	1 cut(s)	713
RsaI	GTAC	2 cut(s)	261, 1111
RsaNI	GTAC	2 cut(s)	260, 1110
RseI	CAYNNNNRTG	3 cut(s)	483, 795, 1235
SaqAI	TTAA	5 cut(s)	144, 225, 825, 857, 1161
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	5 cut(s)	52, 130, 559, 831, 1023
Sau96I	GGNCC	2 cut(s)	269, 749
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	2 cut(s)	101, 761
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	348, 388, 506, 670, 722, 967, 990, 1198
SfaNI	GCATC	3 cut(s)	295, 612, 633
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	2 cut(s)	269, 749
SmiMI	CAYNNNNRTG	3 cut(s)	483, 795, 1235
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	9 cut(s)	19, 549, 800, 863, 888, 937, 948, 1030, 1172
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	2 cut(s)	171, 697
SspMI	CTAG	2 cut(s)	648, 1005
StyD4I	CCNGG	2 cut(s)	99, 759
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	5 cut(s)	137, 571, 794, 1087, 1101
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	350
TasI	AATT	9 cut(s)	19, 549, 800, 863, 888, 937, 948, 1030, 1172
TatI	WGTACW	1 cut(s)	1109
TfiI	GAWTC	8 cut(s)	544, 674, 710, 728, 1040, 1069, 1227, 1247
Tru1I	TTAA	5 cut(s)	144, 225, 825, 857, 1161
Tru9I	TTAA	5 cut(s)	144, 225, 825, 857, 1161
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	386, 874
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	2 cut(s)	386, 874
TspDTI	ATGAA	7 cut(s)	32, 57, 429, 813, 1185, 1219, 1226
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	269, 749
XapI	RAATTY	2 cut(s)	937, 1172
XceI	RCATGY	1 cut(s)	823
XmnI	GAANNNNTTC	2 cut(s)	346, 543
XspI	CTAG	2 cut(s)	648, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.