Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010917.1

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Forward (+)

107377 .. 108090

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010917.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgaatgcagccagtaatgaggctgctattgtctttgttgctgtggatgtacccgttggtccagaatgccgtttggacttgagtgattgggatgatgctattcaaaagataatagaagcgtccactaccagaaagctttcgataatagttgagaagtctatgcctttcaatctacgtgactggattgaggatattatacgataccgaaatccacagggcttgaagttttcagtattatcaaatcctgacttcatttcacaacggacagcagtacgagagttgaaagacccgaagagggtggttattgcgaaaaatcatggccatggagaggatgtgcttaggttacaacaactttatcctcaatatgttcctgtagaaaggattctaattgctgatgatcacaagactgttgagatggggaaactttggagtagtgtatatcgcctatatcctgccatgacgcacacatttgggaatgtgatgcctagcatttgtggtagcataggtgctgattcaaatgatgtgagaagaaatattggatgtgcagattctgaaagctatatggatgcttctattggctttggaggaccagtaatccaggatatttcttatttgaagtctgttctacaccgtgatgaattgaagttggagtcagacatgcttaatcagatcatcaagttgaaagaggacaaagagaagagaagaggtttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046398 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

237

Amino Acids

26.8

Weight (kDa)

5.99

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	319
AfaI	GTAC	2 cut(s)	51, 273
AfiI	CCNNNNNNNGG	2 cut(s)	295, 328
AgsI	TTSAA	8 cut(s)	104, 169, 223, 283, 516, 616, 643, 682
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	2 cut(s)	136, 558
AluI	AGCT	2 cut(s)	136, 558
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	8, 23
Asp700I	GAANNNNTTC	2 cut(s)	136, 381
AspS9I	GGNCC	2 cut(s)	59, 587
AvaII	GGWCC	2 cut(s)	59, 587
BalI	TGGCCA	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	10, 20
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	599
BclI	TGATCA	1 cut(s)	397
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	2 cut(s)	9, 24
BlsI	GCNGC	2 cut(s)	10, 25
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	2 cut(s)	59, 587
BmgT120I	GGNCC	2 cut(s)	59, 587
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	3 cut(s)	85, 471, 556
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 328
Bse1I	ACTGG	3 cut(s)	12, 185, 590
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	5 cut(s)	52, 97, 337, 545, 571
BseLI	CCNNNNNNNGG	2 cut(s)	295, 328
BseNI	ACTGG	3 cut(s)	12, 185, 590
BseXI	GCAGC	2 cut(s)	10, 20
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	295, 328
BsmI	GAATGC	2 cut(s)	10, 71
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	397, 669
Bsp19I	CCATGG	1 cut(s)	322
BspANI	GGCC	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	12, 185, 590
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	397, 669
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	409, 632
Bst6I	CTCTTC	3 cut(s)	287, 692, 697
BstBAI	YACGTR	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	5 cut(s)	52, 97, 337, 545, 571
BstKTI	GATC	2 cut(s)	400, 672
BstMBI	GATC	2 cut(s)	397, 669
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	10, 20
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	5 cut(s)	52, 97, 337, 545, 571
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	59, 587
CseI	GACGC	2 cut(s)	108, 469
Csp6I	GTAC	2 cut(s)	50, 272
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	4 cut(s)	317, 323, 457, 658
CviJI	RGCY	7 cut(s)	11, 23, 136, 219, 321, 558, 579
CviKI_1	RGCY	7 cut(s)	11, 23, 136, 219, 321, 558, 579
CviQI	GTAC	2 cut(s)	50, 272
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	399, 671
DpnII	GATC	2 cut(s)	397, 669
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	287, 692, 697
EarI	CTCTTC	3 cut(s)	287, 692, 697
Eco130I	CCWWGG	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	59, 587
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	320, 326, 460, 661
FatI	CATG	4 cut(s)	316, 322, 456, 657
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	9, 24
FokI	GGATG	5 cut(s)	59, 104, 344, 552, 578
Fsp4HI	GCNGC	2 cut(s)	9, 24
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	9, 24
HaeIII	GGCC	1 cut(s)	321
HgaI	GACGC	2 cut(s)	108, 469
Hin1II	CATG	4 cut(s)	320, 326, 460, 661
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	382, 512, 548, 650
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	3 cut(s)	553, 655, 669
Hpy188III	TCNNGA	2 cut(s)	62, 245
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	409, 632
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	8, 545
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	320, 326, 460, 661
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	397, 669
Lsp1109I	GCAGC	2 cut(s)	10, 20
LweI	GCATC	3 cut(s)	85, 471, 556
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	176, 342
MalI	GATC	2 cut(s)	399, 671
MboI	GATC	2 cut(s)	397, 669
MboII	GAAGA	4 cut(s)	304, 540, 709, 714
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	2 cut(s)	387, 638
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	8 cut(s)	13, 181, 288, 322, 369, 578, 679, 698
Mox20I	TGGCCA	1 cut(s)	321
MroXI	GAANNNNTTC	2 cut(s)	136, 381
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	321, 633
Msp20I	TGGCCA	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	599
Mva1269I	GAATGC	2 cut(s)	10, 71
MvaI	CCWGG	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	397, 669
NlaIII	CATG	4 cut(s)	320, 326, 460, 661
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	661
PctI	GAATGC	2 cut(s)	10, 71
PdmI	GAANNNNTTC	2 cut(s)	136, 381
PfeI	GAWTC	3 cut(s)	382, 512, 548
PfoI	TCCNGGA	1 cut(s)	597
PkrI	GCNGC	2 cut(s)	10, 25
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	59, 587
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	51, 273
RsaNI	GTAC	2 cut(s)	50, 272
RseI	CAYNNNNRTG	2 cut(s)	321, 633
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	2 cut(s)	9, 24
Sau3AI	GATC	2 cut(s)	397, 669
Sau96I	GGNCC	2 cut(s)	59, 587
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	1 cut(s)	599
SetI	ASST	6 cut(s)	138, 178, 344, 508, 560, 709
SfaNI	GCATC	3 cut(s)	85, 471, 556
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	59, 587
SmiMI	CAYNNNNRTG	2 cut(s)	321, 633
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	387, 638
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	409, 632
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	387, 638
TfiI	GAWTC	3 cut(s)	382, 512, 548
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	8, 23
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	17, 241, 651
TspGWI	ACGGA	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	59, 587
XceI	RCATGY	1 cut(s)	661
XmnI	GAANNNNTTC	2 cut(s)	136, 381
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.