Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Forward (+)

70639165 .. 70641576

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0583000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTGAGGTATTCGAAGGATACGAGCGCCAATACAGCGAGCTCTCCTCCAATCTCACCAAGAAGTGTACAATAGCTGGTGGAATTCATGGAGAGCAAAAGAAGCAAAAGATTTCTGAAATAAAGGCTGGAATAGATGAAGCAGAATCTTTGATCCGGAAAATGGACGTTGAGGCAAGAAATTTGCAGCCAAATGTTAAGGCTGTGCTTCTTGCTAAGTTGAGGGAATATAAATCAGATCTGAATAATCTGAAAACCGAAGTTAAAAGACTTGTATCTGGCAACTTAAATGCATCTGCCCGGGATGAGTTGTTGGAATCAGGCATGGCTGATGCTTTGACGGCATCAGCAGATCAGAGATCAAGGTTGATGGTGACAACAGAGAGATTAGACAAGACCAGTGATAGAGTTAAGAACAGTAGAAGAACCATGCTGGAAACAGAAGAGCTTGGTGTTTCAATCCTTCAAGATTTGCATTCACAGCGACAGTCTCTCTTACATGCTCATAGCGCGGTTCATGGAGTGGATGACAACATAGGTAAGAGCAAGAAAATTTTGACTTCCATGACAAGGAGGATGAGCAGGAACAAGTGGATAATTGGCTCAATTATTGCAGTTCTTGTCATTGCAATTGCCTTGATCTTGTACTTCAAACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

220

Amino Acids

24.66

Weight (kDa)

9.54

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	6.3e-31	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	128 - 193	1.4e-23	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	156
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	84, 181, 552
AfaI	GTAC	2 cut(s)	70, 647
AfiI	CCNNNNNNNGG	2 cut(s)	163, 570
AgsI	TTSAA	3 cut(s)	459, 467, 652
AluBI	AGCT	3 cut(s)	43, 77, 448
AluI	AGCT	3 cut(s)	43, 77, 448
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	3 cut(s)	84, 181, 552
AspLEI	GCGC	2 cut(s)	30, 512
AsuC2I	CCSGG	2 cut(s)	301, 302
AsuHPI	GGTGA	2 cut(s)	49, 385
AsuII	TTCGAA	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	14
BcnI	CCSGG	2 cut(s)	301, 302
BcoDI	GTCTC	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	301, 302
BmeT110I	CYCGRG	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	301, 302
BmsI	GCATC	3 cut(s)	302, 322, 353
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu14I	TTCGAA	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	301, 302
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 570
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	310, 532, 582
BseLI	CCNNNNNNNGG	2 cut(s)	163, 570
BseMI	GCAATG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	157, 301
BslI	CCNNNNNNNGG	2 cut(s)	163, 570
BsmAI	GTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	68
Bsp143I	GATC	5 cut(s)	153, 238, 352, 359, 639
BspACI	CCGC	1 cut(s)	512
BspEI	TCCGGA	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	512
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	5 cut(s)	153, 238, 352, 359, 639
Bst4CI	ACNGT	2 cut(s)	419, 489
Bst6I	CTCTTC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	310, 532, 582
BstFNI	CGCG	1 cut(s)	512
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	2 cut(s)	30, 512
BstKTI	GATC	5 cut(s)	156, 241, 355, 362, 642
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	5 cut(s)	153, 238, 352, 359, 639
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 103, 341, 481, 509
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	299, 300
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	310, 532, 582
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	2 cut(s)	30, 512
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	69, 646
CviAII	CATG	6 cut(s)	89, 325, 430, 500, 518, 565
CviJI	RGCY	8 cut(s)	43, 77, 128, 190, 203, 329, 448, 603
CviKI_1	RGCY	8 cut(s)	43, 77, 128, 190, 203, 329, 448, 603
CviQI	GTAC	2 cut(s)	69, 646
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	155, 240, 354, 361, 641
DpnII	GATC	5 cut(s)	153, 238, 352, 359, 639
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
FaiI	YATR	9 cut(s)	90, 231, 326, 431, 501, 507, 519, 536, 566
FatI	CATG	6 cut(s)	88, 324, 429, 499, 517, 564
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	3 cut(s)	317, 539, 589
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	2 cut(s)	29, 511
GluI	GCNGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	31
HapII	CCGG	2 cut(s)	157, 301
HhaI	GCGC	2 cut(s)	30, 512
Hin1II	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
Hin6I	GCGC	2 cut(s)	28, 510
HinP1I	GCGC	2 cut(s)	28, 510
HinfI	GANTC	2 cut(s)	146, 317
HpaII	CCGG	2 cut(s)	157, 301
HphI	GGTGA	2 cut(s)	49, 385
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	5 cut(s)	118, 238, 243, 252, 357
Hpy188III	TCNNGA	2 cut(s)	157, 467
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	11, 473
HpyCH4III	ACNGT	2 cut(s)	419, 489
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	187, 293, 475, 614, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 103, 341, 481, 509
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
HspAI	GCGC	2 cut(s)	28, 510
Kpn2I	TCCGGA	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	153, 238, 352, 359, 639
LguI	GCTCTTC	1 cut(s)	438
LpnPI	CCDG	9 cut(s)	63, 114, 170, 264, 306, 314, 412, 419, 568
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	3 cut(s)	302, 322, 353
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	5 cut(s)	155, 240, 354, 361, 641
MboI	GATC	5 cut(s)	153, 238, 352, 359, 639
MboII	GAAGA	2 cut(s)	435, 455
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	6 cut(s)	84, 181, 552, 597, 606, 630
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	58, 166, 216, 567
Mph1103I	ATGCAT	1 cut(s)	295
MroI	TCCGGA	1 cut(s)	156
MseI	TTAA	5 cut(s)	198, 264, 287, 411, 657
MspI	CCGG	2 cut(s)	157, 301
MspR9I	CCNGG	2 cut(s)	301, 302
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	475
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	5 cut(s)	36, 103, 341, 481, 509
NciI	CCSGG	2 cut(s)	301, 302
NdeII	GATC	5 cut(s)	153, 238, 352, 359, 639
NlaIII	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	503
NspV	TTCGAA	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	146, 317
PkrI	GCNGC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	70, 647
RsaNI	GTAC	2 cut(s)	69, 646
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	198, 264, 287, 411, 657
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	5 cut(s)	153, 238, 352, 359, 639
ScrFI	CCNGG	2 cut(s)	301, 302
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	12, 45, 79, 171, 368, 450, 541
SfaNI	GCATC	3 cut(s)	302, 322, 353
SfuI	TTCGAA	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	302
Sse9I	AATT	6 cut(s)	84, 181, 552, 597, 606, 630
SsiI	CCGC	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	299, 300
TaaI	ACNGT	2 cut(s)	419, 489
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	15
TasI	AATT	6 cut(s)	84, 181, 552, 597, 606, 630
TatI	WGTACW	2 cut(s)	68, 645
TfiI	GAWTC	2 cut(s)	146, 317
Tru1I	TTAA	5 cut(s)	198, 264, 287, 411, 657
Tru9I	TTAA	5 cut(s)	198, 264, 287, 411, 657
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	77, 153, 506
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	3 cut(s)	84, 181, 552
XceI	RCATGY	1 cut(s)	503
XmaI	CCCGGG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.