Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Reverse (-)

74870368 .. 74872098

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAATCAACATTGGGAATCAGCAGTCCTGACCTGCTAAAAGATATAGTGTATTGTAAAGATGCTCTTCTTAATGTGGGGTTGGTCACAAAAGCTAGGCTATTGTCTAACATAGTTATGTTGGATAAGAAGATGAGGGAGCAGTTTGTACAATTGATACTAAACAATATGTCAACTCTGGCAGGGAAGCAAGTTGCTGTATTTAGGATCACGTACAAGAGCAACATGACAGATCTCACCAATTCACCTGCAGTGAGTCTATGTGAAGCACTTCATAAGGAAGATGTTCTTCAAAGGCTAGGAGCTAAAGCTGACTTGGTACTATATGATGGAAAGACGCATACAGACTTGTTCCTTCAAGATCCCTTAAGAGGTGGTAAAGACAAAATGTTTGACCAAATAGTTGCTGTTATACATGCCGATGATAAGGAAGCTGTTGAGCAAGATGCTGTGGCACCTCCTAGAAGACGCCTTGTTCCTGAGATCTTGTTGAAGTTGGCACGCAACATCAGCCCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010296 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051723 GO:0052689 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01120 ko01130 map00900 map01120 map01130

Pfam Domains

Protein Families

Abhydrolase_3 COesterase

Protein Analysis

174

Amino Acids

19.29

Weight (kDa)

7.76

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	2 cut(s)	42, 256
AccB1I	GGYRCC	1 cut(s)	454
AclWI	GGATC	2 cut(s)	215, 356
AcyI	GRCGYC	1 cut(s)	469
AfaI	GTAC	3 cut(s)	150, 215, 321
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	293, 359, 493
AluBI	AGCT	4 cut(s)	95, 305, 311, 434
AluI	AGCT	4 cut(s)	95, 305, 311, 434
AlwI	GGATC	2 cut(s)	215, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
Asp700I	GAANNNNTTC	2 cut(s)	270, 285
AsuHPI	GGTGA	2 cut(s)	229, 237
BanI	GGYRCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	472
BccI	CCATC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	96, 299, 462
BfmI	CTRYAG	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	367
BfuAI	ACCTGC	2 cut(s)	42, 256
BglII	AGATCT	2 cut(s)	232, 483
BmiI	GGNNCC	1 cut(s)	456
BmsI	GCATC	2 cut(s)	52, 436
BpiI	GAAGAC	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	371
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	207, 232, 361, 483
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	2 cut(s)	42, 256
BspPI	GGATC	2 cut(s)	215, 356
BspQI	GCTCTTC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	454
BspTI	CTTAAG	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	148
BssMI	GATC	4 cut(s)	207, 232, 361, 483
BssNI	GRCGYC	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	469
BstAFI	CTTAAG	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	480
BstKTI	GATC	4 cut(s)	210, 235, 364, 486
BstMBI	GATC	4 cut(s)	207, 232, 361, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	3 cut(s)	232, 361, 483
BstYI	RGATCY	3 cut(s)	232, 361, 483
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	2 cut(s)	42, 256
Cac8I	GCNNGC	1 cut(s)	502
CseI	GACGC	2 cut(s)	346, 477
Csp6I	GTAC	3 cut(s)	149, 214, 320
CviAII	CATG	2 cut(s)	226, 416
CviJI	RGCY	7 cut(s)	95, 100, 298, 305, 311, 434, 513
CviKI_1	RGCY	7 cut(s)	95, 100, 298, 305, 311, 434, 513
CviQI	GTAC	3 cut(s)	149, 214, 320
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	4 cut(s)	209, 234, 363, 485
DpnII	GATC	4 cut(s)	207, 232, 361, 483
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
FaeI	CATG	2 cut(s)	229, 419
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 273, 305
FatI	CATG	2 cut(s)	225, 415
FspBI	CTAG	3 cut(s)	96, 299, 462
HgaI	GACGC	2 cut(s)	346, 477
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	2 cut(s)	229, 419
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	5, 18, 256
HphI	GGTGA	2 cut(s)	229, 237
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	29, 359, 479
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	229, 419
Kzo9I	GATC	4 cut(s)	207, 232, 361, 483
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	139, 302
LpnPI	CCDG	6 cut(s)	42, 47, 164, 168, 261, 492
LweI	GCATC	2 cut(s)	52, 436
MaeI	CTAG	3 cut(s)	96, 299, 462
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	209, 234, 363, 485
MboI	GATC	4 cut(s)	207, 232, 361, 483
MboII	GAAGA	5 cut(s)	59, 142, 281, 293, 477
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	3 cut(s)	232, 361, 483
MluCI	AATT	2 cut(s)	152, 241
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	129, 365, 468
MroXI	GAANNNNTTC	2 cut(s)	270, 285
MseI	TTAA	2 cut(s)	72, 368
MslI	CAYNNNNRTG	2 cut(s)	116, 420
MspCI	CTTAAG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	510
NdeII	GATC	4 cut(s)	207, 232, 361, 483
NlaIII	CATG	2 cut(s)	229, 419
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	270, 285
PfeI	GAWTC	2 cut(s)	5, 18
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	456
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	3 cut(s)	232, 361, 483
RsaI	GTAC	3 cut(s)	150, 215, 321
RsaNI	GTAC	3 cut(s)	149, 214, 320
RseI	CAYNNNNRTG	2 cut(s)	116, 420
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	72, 368
Sau3AI	GATC	4 cut(s)	207, 232, 361, 483
SchI	GAGTC	1 cut(s)	265
SetI	ASST	9 cut(s)	36, 97, 215, 250, 307, 313, 376, 436, 460
SfaNI	GCATC	2 cut(s)	52, 436
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	116, 420
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	2 cut(s)	152, 241
SspMI	CTAG	3 cut(s)	96, 299, 462
TaiI	ACGT	1 cut(s)	215
TasI	AATT	2 cut(s)	152, 241
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	5, 18
Tru1I	TTAA	2 cut(s)	72, 368
Tru9I	TTAA	2 cut(s)	72, 368
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	258
Vha464I	CTTAAG	1 cut(s)	367
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	2 cut(s)	270, 285
XspI	CTAG	3 cut(s)	96, 299, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.