Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001706.1

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Forward (+)

21174 .. 25407

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001706.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atgtggatgcacaacgtggcaacggcggtgttgatggtgccggtagccaccggaatccttcaccgctttccgacgggtcccaaccagccggtcgttgtgggaaagttttgcagagctgtgattctaggggtgatatactcaacaagcataggagggatgagcactctcactgggacaggtgtgaatctcatattgatcggaatgtggaacagctattttccagaagcaaagccgatcacattcagcacctggttccttttcgggttcccttcggctttgttgatgttcttcgcaatgtgggcgatcctttgcttcttgtattgctcgagaagctcgggccaggctctctcttcttatttcgacaaggactatttgaagaaagagctcgagatgttgggtccaatggcttttgctgagaagatggttttggctttgtttttggtgagaatcaagaacgttaagcgggttacccatgtgtgcatacctcatggttacacgggtgacacgggctccatgtcacctaaagttgtccacgtaccttcgcctcctgatggccaacctgctgtgcaatttgtcgttctgtcaaatccggacttttcctcttcgggctctagacttcaagacctgaggaacccagatagagttgttattgggttaaaatcaaatgtaggggacattcttccattgcaacagttgtacatggggttagttcaaaacccagtagcaatccgcgtagtcccagtacctaatgttgttaacgttgagatagaaaaacttgccaccaatgcaatgcttgctatgaagcttacctacatcaacgtgatatcaagcttgtgcgacaaaacaagtggtgccgatatgagcgtcgttggacaactacttggagaagattacagactggacaacaactacatgactgccacattagcaattggaggccaagaactgatgaaagatactttgtacataaagtatgcttttagtgaagctggattgtacctcgaggcaatgctgactaagaaggttgttcagttagacgtgaagaggagaaaggagtttgttaagctaatgttacggaaaatgctctcacttaggaacagaaggattgccatattcggagtcacgtataagagctgggttctcgatctcacaagatcccctgcgattagcgtatgcaaagccctactgagagagggtgctttcctccaaatatatgaaccctcagtggatgagccaagaatccggcaacttcttggtaatcctgaagcagtggacattttcaatgatctaatagaggcatgtaatggcgcacatgcagttgcatttctggtgccaatgcaccagctacaatttaattttcaaggaatattcaatgtgatgacagaccaagcaggcggtcgaactctgtttatgggctgtgatatgaatgtcaatttcgacattcttagacatatgggcttcctggtttatattagtggaaaaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

495

Amino Acids

54.96

Weight (kDa)

9.03

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1001
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	3 cut(s)	37, 851, 1330
AccII	CGCG	1 cut(s)	732
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	5 cut(s)	26, 64, 463, 730, 1395
AclI	AACGTT	2 cut(s)	456, 759
AclWI	GGATC	2 cut(s)	298, 1149
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	1284
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	5 cut(s)	537, 698, 744, 965, 998
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	6 cut(s)	376, 620, 713, 1282, 1361, 1372
AjiI	CACGTC	1 cut(s)	1039
AjnI	CCWGG	3 cut(s)	248, 339, 1461
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
Alw21I	GWGCWC	2 cut(s)	164, 387
AlwI	GGATC	2 cut(s)	298, 1149
AlwNI	CAGNNNCTG	1 cut(s)	249
Ama87I	CYCGRG	4 cut(s)	325, 334, 386, 1001
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	3 cut(s)	337, 553, 937
AspLEI	GCGC	1 cut(s)	1310
AspS9I	GGNCC	3 cut(s)	77, 337, 398
AsuHPI	GGTGA	5 cut(s)	53, 142, 454, 510, 512
AvaI	CYCGRG	4 cut(s)	325, 334, 386, 1001
AvaII	GGWCC	2 cut(s)	77, 398
AxyI	CCTNAGG	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	3 cut(s)	37, 851, 1330
BanII	GRGCYC	3 cut(s)	387, 512, 611
BarI	GAAGNNNNNNTAC	2 cut(s)	794, 826
Bbv12I	GWGCWC	2 cut(s)	164, 387
BccI	CCATC	3 cut(s)	28, 415, 545
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	3 cut(s)	250, 341, 1463
BfaI	CTAG	2 cut(s)	125, 612
BfuAI	ACCTGC	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	250, 341, 1463
Bme18I	GGWCC	2 cut(s)	77, 398
BmeT110I	CYCGRG	4 cut(s)	325, 334, 386, 1001
BmgBI	CACGTC	1 cut(s)	1039
BmgT120I	GGNCC	3 cut(s)	77, 337, 398
BmrFI	CCNGG	3 cut(s)	250, 341, 1463
BmrI	ACTGGG	3 cut(s)	180, 713, 734
BmuI	ACTGGG	3 cut(s)	180, 713, 734
BsaAI	YACGTR	2 cut(s)	535, 1125
BsaWI	WCCGGW	2 cut(s)	50, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse118I	RCCGGY	2 cut(s)	40, 88
Bse1I	ACTGG	4 cut(s)	175, 719, 740, 903
Bse21I	CCTNAGG	1 cut(s)	626
Bse3DI	GCAATG	4 cut(s)	300, 683, 795, 1014
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	250, 341, 1463
BseGI	GGATG	3 cut(s)	12, 162, 1234
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMI	GCAATG	4 cut(s)	300, 683, 795, 1014
BseMII	CTCAG	4 cut(s)	405, 617, 1178, 1236
BseNI	ACTGG	4 cut(s)	175, 719, 740, 903
BseRI	GAGGAG	1 cut(s)	1060
BseYI	CCCAGC	1 cut(s)	1134
Bsh1236I	CGCG	1 cut(s)	732
Bsh1285I	CGRYCG	2 cut(s)	93, 1399
BshFI	GGCC	3 cut(s)	339, 555, 939
BshNI	GGYRCC	3 cut(s)	37, 851, 1330
BsiEI	CGRYCG	2 cut(s)	93, 1399
BsiHKAI	GWGCWC	2 cut(s)	164, 387
BsiHKCI	CYCGRG	4 cut(s)	325, 334, 386, 1001
BsiSI	CCGG	5 cut(s)	41, 51, 89, 590, 1243
BslFI	GGGAC	4 cut(s)	63, 187, 686, 722
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmFI	GGGAC	4 cut(s)	63, 187, 686, 722
BsnI	GGCC	3 cut(s)	339, 555, 939
BsoBI	CYCGRG	4 cut(s)	325, 334, 386, 1001
Bsp1286I	GDGCHC	4 cut(s)	164, 387, 512, 611
Bsp13I	TCCGGA	1 cut(s)	589
Bsp1407I	TGTACA	2 cut(s)	696, 963
Bsp143I	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
BspACI	CCGC	5 cut(s)	26, 64, 463, 730, 1395
BspANI	GGCC	3 cut(s)	339, 555, 939
BspCNI	CTCAG	4 cut(s)	406, 618, 1179, 1235
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	732
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	298, 1149
BspT107I	GGYRCC	3 cut(s)	37, 851, 1330
BsrDI	GCAATG	4 cut(s)	300, 683, 795, 1014
BsrFI	RCCGGY	2 cut(s)	40, 88
BsrGI	TGTACA	2 cut(s)	696, 963
BsrI	ACTGG	4 cut(s)	175, 719, 740, 903
BssAI	RCCGGY	2 cut(s)	40, 88
BssMI	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
Bst2UI	CCWGG	3 cut(s)	250, 341, 1463
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	3 cut(s)	355, 607, 1037
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstAUI	TGTACA	2 cut(s)	696, 963
BstBAI	YACGTR	2 cut(s)	535, 1125
BstC8I	GCNNGC	2 cut(s)	795, 1393
BstDEI	CTNAG	8 cut(s)	414, 626, 1017, 1091, 1187, 1222, 1445, 1485
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	12, 162, 1234
BstFNI	CGCG	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	1310
BstKTI	GATC	6 cut(s)	198, 237, 306, 1147, 1157, 1288
BstMBI	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
BstMCI	CGRYCG	2 cut(s)	93, 1399
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 330, 785, 794, 926
BstNI	CCWGG	3 cut(s)	250, 341, 1463
BstNSI	RCATGY	2 cut(s)	1302, 1316
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	248, 339, 1461
BstUI	CGCG	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	1154
BstYI	RGATCY	1 cut(s)	1154
Bsu36I	CCTNAGG	1 cut(s)	626
BsuRI	GGCC	3 cut(s)	339, 555, 939
BtrI	CACGTC	1 cut(s)	1039
BtsCI	GGATG	3 cut(s)	12, 162, 1234
BtsI	GCAGTG	1 cut(s)	1275
BtsIMutI	CAGTG	3 cut(s)	168, 1230, 1275
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	795, 1393
CaiI	CAGNNNCTG	1 cut(s)	249
CfoI	GCGC	1 cut(s)	1310
Cfr10I	RCCGGY	2 cut(s)	40, 88
Cfr13I	GGNCC	3 cut(s)	77, 337, 398
CseI	GACGC	1 cut(s)	853
CsiI	ACCWGGT	1 cut(s)	248
Csp6I	GTAC	5 cut(s)	536, 697, 743, 964, 997
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	7 cut(s)	473, 488, 514, 700, 913, 1299, 1313
CviQI	GTAC	5 cut(s)	536, 697, 743, 964, 997
DdeI	CTNAG	8 cut(s)	414, 626, 1017, 1091, 1187, 1222, 1445, 1485
DpnI	GATC	6 cut(s)	197, 236, 305, 1146, 1156, 1287
DpnII	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	3 cut(s)	355, 607, 1037
EarI	CTCTTC	3 cut(s)	355, 607, 1037
Ecl136II	GAGCTC	1 cut(s)	385
Eco24I	GRGCYC	3 cut(s)	387, 512, 611
Eco32I	GATATC	1 cut(s)	825
Eco47I	GGWCC	2 cut(s)	77, 398
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	1284
Eco81I	CCTNAGG	1 cut(s)	626
Eco88I	CYCGRG	4 cut(s)	325, 334, 386, 1001
Eco91I	GGTNACC	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	248, 339, 1461
EcoRV	GATATC	1 cut(s)	825
EcoT38I	GRGCYC	3 cut(s)	387, 512, 611
FaeI	CATG	7 cut(s)	476, 491, 517, 703, 916, 1302, 1316
FaqI	GGGAC	4 cut(s)	63, 187, 686, 722
FatI	CATG	7 cut(s)	472, 487, 513, 699, 912, 1298, 1312
FauI	CCCGC	1 cut(s)	456
FauNDI	CATATG	1 cut(s)	1452
FokI	GGATG	3 cut(s)	19, 169, 1241
FriOI	GRGCYC	3 cut(s)	387, 512, 611
FspBI	CTAG	2 cut(s)	125, 612
GlaI	GCGC	1 cut(s)	1309
GsaI	CCCAGC	1 cut(s)	1138
HaeIII	GGCC	3 cut(s)	339, 555, 939
HapII	CCGG	5 cut(s)	41, 51, 89, 590, 1243
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	1 cut(s)	1310
Hin1II	CATG	7 cut(s)	476, 491, 517, 703, 916, 1302, 1316
Hin6I	GCGC	1 cut(s)	1308
HinP1I	GCGC	1 cut(s)	1308
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	2 cut(s)	803, 829
HinfI	GANTC	6 cut(s)	54, 121, 184, 447, 1119, 1239
HpaI	GTTAAC	1 cut(s)	757
HpaII	CCGG	5 cut(s)	41, 51, 89, 590, 1243
HphI	GGTGA	5 cut(s)	53, 142, 454, 510, 512
Hpy166II	GTNNAC	3 cut(s)	532, 757, 1273
Hpy188I	TCNGA	3 cut(s)	72, 200, 1118
Hpy8I	GTNNAC	3 cut(s)	532, 757, 1273
Hpy99I	CGWCG	2 cut(s)	76, 869
HpyAV	CCTTC	5 cut(s)	68, 279, 549, 1015, 1095
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4IV	ACGT	7 cut(s)	15, 456, 534, 759, 819, 1038, 1124
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 330, 785, 794, 926
HpyF3I	CTNAG	8 cut(s)	414, 626, 1017, 1091, 1187, 1222, 1445, 1485
HpySE526I	ACGT	7 cut(s)	15, 456, 534, 759, 819, 1038, 1124
Hsp92II	CATG	7 cut(s)	476, 491, 517, 703, 916, 1302, 1316
HspAI	GCGC	1 cut(s)	1308
KflI	GGGWCCC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	589
KspAI	GTTAAC	1 cut(s)	757
Kzo9I	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
LmnI	GCTCC	1 cut(s)	515
MabI	ACCWGGT	1 cut(s)	248
MaeI	CTAG	2 cut(s)	125, 612
MaeII	ACGT	7 cut(s)	15, 456, 534, 759, 819, 1038, 1124
MaeIII	GTNAC	6 cut(s)	466, 491, 500, 516, 1071, 1120
MalI	GATC	6 cut(s)	197, 236, 305, 1146, 1156, 1287
MboI	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
MboII	GAAGA	8 cut(s)	280, 342, 388, 430, 594, 671, 899, 1054
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	1154
MhlI	GDGCHC	4 cut(s)	164, 387, 512, 611
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	5 cut(s)	569, 930, 1349, 1354, 1432
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	1128
MmeI	TCCRAC	2 cut(s)	95, 850
Mox20I	TGGCCA	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	589
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	5 cut(s)	459, 656, 756, 1062, 1353
MslI	CAYNNNNRTG	1 cut(s)	818
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	5 cut(s)	41, 51, 89, 590, 1243
MspR9I	CCNGG	3 cut(s)	250, 341, 1463
MunI	CAATTG	1 cut(s)	930
MvaI	CCWGG	3 cut(s)	250, 341, 1463
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	5 cut(s)	299, 330, 785, 794, 926
NdeI	CATATG	1 cut(s)	1452
NdeII	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
NlaIII	CATG	7 cut(s)	476, 491, 517, 703, 916, 1302, 1316
NmuCI	GTSAC	3 cut(s)	500, 516, 1120
NspI	RCATGY	2 cut(s)	1302, 1316
PaeR7I	CTCGAG	3 cut(s)	325, 386, 1001
PfeI	GAWTC	5 cut(s)	54, 121, 184, 447, 1239
PleI	GAGTC	1 cut(s)	1127
PpsI	GAGTC	1 cut(s)	1127
Ppu21I	YACGTR	2 cut(s)	535, 1125
PpuMI	RGGWCCY	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	387
Psp1406I	AACGTT	2 cut(s)	456, 759
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	248, 339, 1461
PspEI	GGTNACC	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	1134
PspGI	CCWGG	3 cut(s)	248, 339, 1461
PspPI	GGNCC	3 cut(s)	77, 337, 398
PspPPI	RGGWCCY	1 cut(s)	77
PspXI	VCTCGAGB	1 cut(s)	1001
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	1154
RsaI	GTAC	5 cut(s)	537, 698, 744, 965, 998
RsaNI	GTAC	5 cut(s)	536, 697, 743, 964, 997
RseI	CAYNNNNRTG	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	459, 656, 756, 1062, 1353
Sau3AI	GATC	6 cut(s)	195, 234, 303, 1144, 1154, 1285
Sau96I	GGNCC	3 cut(s)	77, 337, 398
SchI	GAGTC	1 cut(s)	1128
ScrFI	CCNGG	3 cut(s)	250, 341, 1463
SduI	GDGCHC	4 cut(s)	164, 387, 512, 611
SexAI	ACCWGGT	1 cut(s)	248
Sfr274I	CTCGAG	3 cut(s)	325, 386, 1001
SinI	GGWCC	2 cut(s)	77, 398
SlaI	CTCGAG	3 cut(s)	325, 386, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	3 cut(s)	325, 386, 1001
SmoI	CTYRAG	3 cut(s)	325, 386, 1001
Sse9I	AATT	5 cut(s)	569, 930, 1349, 1354, 1432
SsiI	CCGC	5 cut(s)	26, 64, 463, 730, 1395
SspI	AATATT	1 cut(s)	1368
SspMI	CTAG	2 cut(s)	125, 612
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	248, 339, 1461
TaaI	ACNGT	1 cut(s)	693
TaiI	ACGT	7 cut(s)	18, 459, 537, 762, 822, 1041, 1127
TaqI	TCGA	7 cut(s)	326, 360, 387, 1002, 1143, 1399, 1437
TasI	AATT	5 cut(s)	569, 930, 1349, 1354, 1432
TatI	WGTACW	2 cut(s)	696, 963
TfiI	GAWTC	5 cut(s)	54, 121, 184, 447, 1239
Tru1I	TTAA	5 cut(s)	459, 656, 756, 1062, 1353
Tru9I	TTAA	5 cut(s)	459, 656, 756, 1062, 1353
TscAI	CASTG	3 cut(s)	175, 1230, 1275
TseFI	GTSAC	3 cut(s)	500, 516, 1120
Tsp45I	GTSAC	3 cut(s)	500, 516, 1120
TspDTI	ATGAA	4 cut(s)	815, 965, 1230, 1439
TspGWI	ACGGA	1 cut(s)	1090
TspRI	CASTG	3 cut(s)	175, 1230, 1275
VpaK11BI	GGWCC	2 cut(s)	77, 398
XbaI	TCTAGA	1 cut(s)	611
XceI	RCATGY	2 cut(s)	1302, 1316
XhoI	CTCGAG	3 cut(s)	325, 386, 1001
XspI	CTAG	2 cut(s)	125, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.