Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Reverse (-)

710242 .. 711135

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG010900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGTTAATTCAAAACCCAGAAGCAATCCGCGTAGTCCCAGTGCCTAATGCTGTTAACGTTGAGATAGCAAAACTTGCCACCAATGCAATGCTCGCTATGAAACTTACCTACATCAACGCTCTATCAAGCTTGTGCGACAAAACAAATGGTGCCGATATAGGCATCGTTGGACAACTACTTGGAGAAGATTATAGACTGGACAACAACTACATGACTGCCACATTAGGAATTGGAGGCCAAGAATTGATGAAAGATACTTTGTACATGAAGTATGCTTTTAGTGAAGCTGGATTGTACCACGAGGCAATGCTGACTAAGAAGGTTGCTCATTTAGACGTGAAGAGGAGAAAGGAGTTTGTTCAGCTAATTTTACGGAAAATGCTCTCACTTAGGAACAGAAGGATTACCATATTCGGAGTCACGTATAAGAGCCGGGTTCTCGATCTCACAAGATCACCCGCGATTAGCGTATGCAAAGCCCTACTGAGAGAGGGTGCTTTCCTCCACATATATGAGCCGTCAGTAGATGAGCCAAGAATCCGGCAACTTCTTGGTAATCCTGAAGCAGTGGACATTTTCGATGATGATCCTATAGAGGCATGTACTGGCGCACATGCAGTTGCATTTTTGGTGCCAATGCACCAGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGACCAACCAGGAGGTCGATATTTGTTTATGGGTTGGCACATGAATGTCAATTTCGACATTCTGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGACCAACCAGGAGGTCGATATTTGTTTATGGGTTGGCACATGAATGTCAATTTCGACATTCTGAGACAGATGGGCTTCCTAGTTTATATTAGTGGAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

297

Amino Acids

33.59

Weight (kDa)

7.74

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh	PF00984	21 - 102	5.5e-16	UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C	PF03720	138 - 228	1.4e-10	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	152, 634
AccII	CGCG	2 cut(s)	33, 464
AciI	CCGC	2 cut(s)	31, 462
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	3 cut(s)	266, 299, 607
AgsI	TTSAA	5 cut(s)	14, 665, 676, 767, 778
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	694, 796
AluBI	AGCT	4 cut(s)	132, 290, 367, 649
AluI	AGCT	4 cut(s)	132, 290, 367, 649
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	450
BanI	GGYRCC	2 cut(s)	152, 634
BauI	CACGAG	1 cut(s)	302
BccI	CCATC	1 cut(s)	853
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	696, 798
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	1 cut(s)	869
BfmI	CTRYAG	1 cut(s)	594
Bme1390I	CCNGG	3 cut(s)	437, 696, 798
BmgBI	CACGTC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	154, 636
BmrFI	CCNGG	3 cut(s)	437, 696, 798
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	588
Bse1I	ACTGG	3 cut(s)	41, 204, 613
Bse3DI	GCAATG	2 cut(s)	96, 315
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	696, 798
BseJI	GATNNNNATC	1 cut(s)	588
BseMI	GCAATG	2 cut(s)	96, 315
BseMII	CTCAG	2 cut(s)	479, 842
BseNI	ACTGG	3 cut(s)	41, 204, 613
BseRI	GAGGAG	1 cut(s)	361
Bsh1236I	CGCG	2 cut(s)	33, 464
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	2 cut(s)	152, 634
BsiSI	CCGG	2 cut(s)	436, 544
BslFI	GGGAC	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	445, 455, 589
BspACI	CCGC	2 cut(s)	31, 462
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	480, 843
BspFNI	CGCG	2 cut(s)	33, 464
BspLI	GGNNCC	2 cut(s)	154, 636
BspPI	GGATC	1 cut(s)	584
BspT107I	GGYRCC	2 cut(s)	152, 634
BsrDI	GCAATG	2 cut(s)	96, 315
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	41, 204, 613
BssMI	GATC	3 cut(s)	445, 455, 589
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	696, 798
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	5 cut(s)	318, 392, 488, 851, 891
BstFNI	CGCG	2 cut(s)	33, 464
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	3 cut(s)	448, 458, 592
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	3 cut(s)	445, 455, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 86, 95
BstNI	CCWGG	2 cut(s)	696, 798
BstNSI	RCATGY	2 cut(s)	606, 620
BstSCI	CCNGG	3 cut(s)	435, 694, 796
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	2 cut(s)	33, 464
BsuRI	GGCC	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	48, 576
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	614
Csp6I	GTAC	3 cut(s)	265, 298, 606
CviAII	CATG	6 cut(s)	214, 268, 603, 617, 727, 829
CviQI	GTAC	3 cut(s)	265, 298, 606
DdeI	CTNAG	5 cut(s)	318, 392, 488, 851, 891
DpnI	GATC	3 cut(s)	447, 457, 591
DpnII	GATC	3 cut(s)	445, 455, 589
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	694, 796
FaeI	CATG	6 cut(s)	217, 271, 606, 620, 730, 832
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	6 cut(s)	213, 267, 602, 616, 726, 828
FauI	CCCGC	1 cut(s)	469
FspBI	CTAG	1 cut(s)	869
GlaI	GCGC	1 cut(s)	613
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	436, 544
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	6 cut(s)	217, 271, 606, 620, 730, 832
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	2 cut(s)	420, 540
HpaI	GTTAAC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	436, 544
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	2 cut(s)	58, 574
Hpy188I	TCNGA	2 cut(s)	419, 852
Hpy188III	TCNNGA	2 cut(s)	443, 563
Hpy8I	GTNNAC	2 cut(s)	58, 574
HpyAV	CCTTC	2 cut(s)	316, 396
HpyCH4IV	ACGT	3 cut(s)	60, 339, 425
HpyCH4V	TGCA	5 cut(s)	89, 477, 620, 626, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 86, 95
HpyF3I	CTNAG	5 cut(s)	318, 392, 488, 851, 891
HpySE526I	ACGT	3 cut(s)	60, 339, 425
Hsp92II	CATG	6 cut(s)	217, 271, 606, 620, 730, 832
HspAI	GCGC	1 cut(s)	612
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	445, 455, 589
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	869
MaeII	ACGT	3 cut(s)	60, 339, 425
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	3 cut(s)	447, 457, 591
MboI	GATC	3 cut(s)	445, 455, 589
MboII	GAAGA	2 cut(s)	200, 355
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	230, 298, 339, 487, 515, 592, 692, 794
MseI	TTAA	4 cut(s)	8, 57, 657, 759
MslI	CAYNNNNRTG	3 cut(s)	513, 729, 831
MspI	CCGG	2 cut(s)	436, 544
MspR9I	CCNGG	3 cut(s)	437, 696, 798
MvaI	CCWGG	2 cut(s)	696, 798
MvnI	CGCG	2 cut(s)	33, 464
MwoI	GCNNNNNNNGC	3 cut(s)	77, 86, 95
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	3 cut(s)	445, 455, 589
NlaIII	CATG	6 cut(s)	217, 271, 606, 620, 730, 832
NlaIV	GGNNCC	2 cut(s)	154, 636
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	2 cut(s)	606, 620
PfeI	GAWTC	1 cut(s)	540
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	694, 796
PspGI	CCWGG	2 cut(s)	694, 796
PspN4I	GGNNCC	2 cut(s)	154, 636
RsaI	GTAC	3 cut(s)	266, 299, 607
RsaNI	GTAC	3 cut(s)	265, 298, 606
RseI	CAYNNNNRTG	3 cut(s)	513, 729, 831
SaqAI	TTAA	4 cut(s)	8, 57, 657, 759
Sau3AI	GATC	3 cut(s)	445, 455, 589
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	3 cut(s)	437, 696, 798
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	3 cut(s)	513, 729, 831
SsiI	CCGC	2 cut(s)	31, 462
SspI	AATATT	2 cut(s)	672, 774
SspMI	CTAG	1 cut(s)	869
StyD4I	CCNGG	3 cut(s)	435, 694, 796
TaiI	ACGT	3 cut(s)	63, 342, 428
TaqI	TCGA	6 cut(s)	444, 582, 703, 741, 805, 843
TatI	WGTACW	2 cut(s)	264, 605
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	4 cut(s)	8, 57, 657, 759
Tru9I	TTAA	4 cut(s)	8, 57, 657, 759
TscAI	CASTG	2 cut(s)	48, 576
TseFI	GTSAC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	5 cut(s)	116, 266, 284, 743, 845
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	2 cut(s)	48, 576
XceI	RCATGY	2 cut(s)	606, 620
XspI	CTAG	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.