Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005179

Physical Location & Seq

Genomic Coordinates Reverse (-)

866162 .. 867518

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGACAGTAATAGCAGAGCGATACCCAAGAATTGACGTCGTTGTGGAAGATTTCAATCAACAACTAATCGCAGATTGGAATGACGGGAACATAGATTTTGAAGAGGAAGTATGTTTGACCATAAGGAGAATTGTGAAAGAGACAGAAACGTCAAAGATTATCGTAGAAAGATCGACCATGCCAATTGATTCTTTCGATATGACAACCACATTATTAGACCTGAGGAACCCAGATAGAGTTGTTATTGGGTTAAAATCAAATGTAGGGGACATTCTTCCATTGCAACAGTTGTACATGGGGTTAGTTCAAAACCCAGTAGCAATCCGCGTAGTCCCAGTACCTAATGTTTGTAACGTTGAGATAGAAAAACTTGCCACCAATGCAATGCTTGCTATGAAGCTTACCTACATCAACGTGATATCAAGCTTGTGCGACAAAACAAGTGGTGCCGATATGAGCGTCGTTGGACAACTACTTGGAGAAGATTACAGACTGGACAACAACTACATGACTGCCACATTCGGAATTGGAGGCCAAGAACTGATGAAAGATACTTTGTACATAAAGTATGCTTTTAATGAAGCTGGATTGTACCTCGAGGCAATGTTGACTAAGAAGGTTGTTCAGTTAGACGTGAAGAGGAGAAAGGAGTTTGTTAAGCTAATGTTACGGAAAATGCTCTCACTTAGGAACAGAAGGATTGCCATATTCGGAGTCACGTATAAGAGCTGGGTTCTCGATCTCACAAGATCCCCTGCGATTAGCGTATGCAAAGCCCTACTGAGAGAGGGTGCGTTCCTCCAAATATATGAACCCTCAGTGGATGAGCCAAGAATCCGGCAACTTCTTGGTAATCCTGAAGCAGTGGACATTTTCAATGATCTAATAGAGGCATGTAATGGCGCACATGCAGTTGCATTTCTGGTGCCAATGCACCAGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGACCAAGCAGGCGGTCGATCTCTGTTTATGGGCTGTGATATGAATGTCAATTTCGACATTCTTAGACATATGGGCTTCCTGGTTTATATTAGTGGAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

360

Amino Acids

40.71

Weight (kDa)

5.45

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh	PF00984	120 - 201	7.6e-16	UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C	PF03720	235 - 325	5.8e-12	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005179)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02200 FvH4_3g02390
rosa_chinensis	RchiOBHm_Chr5g0001321 RchiOBHm_Chr5g0001331 RchiOBHm_Chr5g0003221 RchiOBHm_Chr5g0003231
rosa_laevigata	RLG00000021396 RLG00000021401 RLG00000030920 RLG00000030921
rosa_multiflora	Rmu_sc0001706.1_g000006 Rmu_sc0001817.1_g000008 Rmu_sc0003749.1_g000021 Rmu_sc0010917.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075000
rosa_rugosa	Rorug02G0582900 Rorug02G0583000 Rorug04G0389800 Rorug04G0389900 Rorug04G0401400 Rorug04G0405100
rosa_samantha	Rh5BG012900 Rh5BG027800 Rh5CG010900 Rh5CG011000 Rh5DG010400 Rh5DG010500 Rh5DG031500
rosa_wichuraiana	Rw0G023560 Rw5G000990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AatII	GACGTC	1 cut(s)	39
AbsI	CCTCGAGG	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	446, 925
AccII	CGCG	1 cut(s)	327
AciI	CCGC	2 cut(s)	325, 990
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	744
AcuI	CTGAAG	1 cut(s)	879
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	4 cut(s)	293, 339, 560, 593
AgsI	TTSAA	6 cut(s)	55, 101, 308, 877, 956, 967
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	1056
AluBI	AGCT	6 cut(s)	400, 426, 584, 661, 729, 940
AluI	AGCT	6 cut(s)	400, 426, 584, 661, 729, 940
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	744
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	905
AvaI	CYCGRG	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	446, 925
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BciT130I	CCWGG	1 cut(s)	1058
BcoDI	GTCTC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	1058
BmeT110I	CYCGRG	1 cut(s)	596
BmgBI	CACGTC	1 cut(s)	634
BmiI	GGNNCC	3 cut(s)	227, 448, 927
BmrFI	CCNGG	1 cut(s)	1058
BmrI	ACTGGG	2 cut(s)	308, 329
BmuI	ACTGGG	2 cut(s)	308, 329
BsaAI	YACGTR	1 cut(s)	720
BsaBI	GATNNNNATC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	36
Bse1I	ACTGG	3 cut(s)	314, 335, 498
Bse21I	CCTNAGG	1 cut(s)	221
Bse3DI	GCAATG	3 cut(s)	278, 390, 609
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	1058
BseGI	GGATG	1 cut(s)	829
BseJI	GATNNNNATC	1 cut(s)	54
BseMI	GCAATG	3 cut(s)	278, 390, 609
BseMII	CTCAG	3 cut(s)	212, 773, 831
BseNI	ACTGG	3 cut(s)	314, 335, 498
BseRI	GAGGAG	1 cut(s)	655
BseYI	CCCAGC	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	1 cut(s)	534
BshNI	GGYRCC	2 cut(s)	446, 925
BsiEI	CGRYCG	1 cut(s)	994
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	838
BslFI	GGGAC	2 cut(s)	281, 317
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	281, 317
BsnI	GGCC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	596
Bsp1407I	TGTACA	2 cut(s)	291, 558
Bsp143I	GATC	5 cut(s)	170, 739, 749, 880, 995
BspACI	CCGC	2 cut(s)	325, 990
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	3 cut(s)	213, 774, 830
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	227, 448, 927
BspPI	GGATC	1 cut(s)	744
BspT107I	GGYRCC	2 cut(s)	446, 925
BsrDI	GCAATG	3 cut(s)	278, 390, 609
BsrGI	TGTACA	2 cut(s)	291, 558
BsrI	ACTGG	3 cut(s)	314, 335, 498
BssMI	GATC	5 cut(s)	170, 739, 749, 880, 995
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	1058
Bst4CI	ACNGT	2 cut(s)	7, 288
Bst6I	CTCTTC	2 cut(s)	96, 632
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	2 cut(s)	291, 558
BstBAI	YACGTR	1 cut(s)	720
BstC8I	GCNNGC	2 cut(s)	390, 988
BstDEI	CTNAG	7 cut(s)	221, 612, 686, 782, 817, 1040, 1080
BstF5I	GGATG	1 cut(s)	829
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	5 cut(s)	173, 742, 752, 883, 998
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	5 cut(s)	170, 739, 749, 880, 995
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 389
BstNI	CCWGG	1 cut(s)	1058
BstNSI	RCATGY	2 cut(s)	897, 911
BstSCI	CCNGG	1 cut(s)	1056
BstUI	CGCG	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
Bsu36I	CCTNAGG	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	829
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	2 cut(s)	825, 870
Cac8I	GCNNGC	2 cut(s)	390, 988
CfoI	GCGC	1 cut(s)	905
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	292, 338, 559, 592
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	5 cut(s)	178, 295, 508, 894, 908
CviQI	GTAC	4 cut(s)	292, 338, 559, 592
DdeI	CTNAG	7 cut(s)	221, 612, 686, 782, 817, 1040, 1080
DpnI	GATC	5 cut(s)	172, 741, 751, 882, 997
DpnII	GATC	5 cut(s)	170, 739, 749, 880, 995
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	96, 632
EarI	CTCTTC	2 cut(s)	96, 632
Eco32I	GATATC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	879
Eco81I	CCTNAGG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	1056
EcoRV	GATATC	1 cut(s)	420
FaeI	CATG	5 cut(s)	181, 298, 511, 897, 911
FaqI	GGGAC	2 cut(s)	281, 317
FatI	CATG	5 cut(s)	177, 294, 507, 893, 907
FauNDI	CATATG	1 cut(s)	1047
FokI	GGATG	1 cut(s)	836
GlaI	GCGC	1 cut(s)	904
GsaI	CCCAGC	1 cut(s)	733
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	1 cut(s)	838
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	1 cut(s)	905
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	181, 298, 511, 897, 911
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	2 cut(s)	398, 424
HinfI	GANTC	3 cut(s)	188, 714, 834
HpaII	CCGG	1 cut(s)	838
Hpy166II	GTNNAC	2 cut(s)	609, 868
Hpy188I	TCNGA	2 cut(s)	524, 713
Hpy188III	TCNNGA	2 cut(s)	737, 857
Hpy8I	GTNNAC	2 cut(s)	609, 868
Hpy99I	CGWCG	2 cut(s)	41, 464
HpyAV	CCTTC	2 cut(s)	610, 690
HpyCH4III	ACNGT	2 cut(s)	7, 288
HpyCH4IV	ACGT	6 cut(s)	36, 149, 354, 414, 633, 719
HpyCH4V	TGCA	6 cut(s)	283, 383, 771, 911, 917, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 389
HpyF3I	CTNAG	7 cut(s)	221, 612, 686, 782, 817, 1040, 1080
HpySE526I	ACGT	6 cut(s)	36, 149, 354, 414, 633, 719
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	181, 298, 511, 897, 911
HspAI	GCGC	1 cut(s)	903
Kzo9I	GATC	5 cut(s)	170, 739, 749, 880, 995
MaeII	ACGT	6 cut(s)	36, 149, 354, 414, 633, 719
MaeIII	GTNAC	3 cut(s)	350, 666, 715
MalI	GATC	5 cut(s)	172, 741, 751, 882, 997
MboI	GATC	5 cut(s)	170, 739, 749, 880, 995
MboII	GAAGA	5 cut(s)	59, 113, 266, 494, 649
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	749
MluCI	AATT	7 cut(s)	30, 129, 183, 525, 944, 949, 1027
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	445
MseI	TTAA	4 cut(s)	251, 576, 657, 948
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	1 cut(s)	838
MspR9I	CCNGG	1 cut(s)	1058
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	1058
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	380, 389
NdeI	CATATG	1 cut(s)	1047
NdeII	GATC	5 cut(s)	170, 739, 749, 880, 995
NlaIII	CATG	5 cut(s)	181, 298, 511, 897, 911
NlaIV	GGNNCC	3 cut(s)	227, 448, 927
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	2 cut(s)	897, 911
PaeR7I	CTCGAG	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	188, 834
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Ppu21I	YACGTR	1 cut(s)	720
Psp1406I	AACGTT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	1056
PspFI	CCCAGC	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	1056
PspN4I	GGNNCC	3 cut(s)	227, 448, 927
PspXI	VCTCGAGB	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	749
RsaI	GTAC	4 cut(s)	293, 339, 560, 593
RsaNI	GTAC	4 cut(s)	292, 338, 559, 592
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	4 cut(s)	251, 576, 657, 948
Sau3AI	GATC	5 cut(s)	170, 739, 749, 880, 995
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	1 cut(s)	1058
Sfr274I	CTCGAG	1 cut(s)	596
SlaI	CTCGAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	7 cut(s)	30, 129, 183, 525, 944, 949, 1027
SsiI	CCGC	2 cut(s)	325, 990
SspI	AATATT	1 cut(s)	963
StyD4I	CCNGG	1 cut(s)	1056
TaaI	ACNGT	2 cut(s)	7, 288
TaiI	ACGT	6 cut(s)	39, 152, 357, 417, 636, 722
TaqI	TCGA	6 cut(s)	173, 195, 597, 738, 994, 1032
TasI	AATT	7 cut(s)	30, 129, 183, 525, 944, 949, 1027
TatI	WGTACW	2 cut(s)	291, 558
TfiI	GAWTC	2 cut(s)	188, 834
Tru1I	TTAA	4 cut(s)	251, 576, 657, 948
Tru9I	TTAA	4 cut(s)	251, 576, 657, 948
TscAI	CASTG	2 cut(s)	825, 870
TseFI	GTSAC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	410, 560, 594, 825, 1034
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	2 cut(s)	825, 870
XceI	RCATGY	2 cut(s)	897, 911
XhoI	CTCGAG	1 cut(s)	596
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.