Rh5DG010400

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005179
Physical Location & Seq
Reverse (-)
733900 .. 735120
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG010400.1

Sequence Viewer

Length: 1221 bp
ATGTTCGAGTTGTTAGAAAATCTTGCCGGTGCTAATCTACAGTTTGTCGATGATGTGAACGAAGCAATCGTAGATGCCCAGATGATTTTTATTGGAGTTGAAATACCTATCAAGGTAATTGGCTGTCGTGAAGGATTTGACCTAAGGCTATGGGTAAAAGCCATAAGGAGGATTGTGAAAGTGGCACAAACGTCAAAGATTATCGTAGAAAGATCGACCATGCCAATTGATTCTTTCGATATGACAACCACATTATTAGCCCGAAGACCTCCGCCTCCTTATGGCCAACCTGCTGTGCAATTTGCCGTTATGTCCAATCCGGACTTTTCCTCTCCGGGCTCTAGACTTCAAGACCTGAGGAACCCAGATAGAGTTGTTATTGGGTTAAAATCAAATGAAGGGGACGTTCTTCCATTGCAACAGTTGTACATGGGGTTAATTCAAAACCCAGAAGCAATCCGCGTAGTCCCAGTGCCTAATGCTGTTAACGTTGAGATAGCAAAACTTGCCACCAATGCAATGCTCGCTATGAAACTTACCTACATCAACGCTCTATCAAGCTTGTGCGACAAAACAAATGGTGCCGATATAGGCATCGTTGGACAACTACTTGGAGAAGATTATAGACTGGACAACAACTACATGACTGCCACATTAGGAATTGGAGGCCAAGAACTGATGAAAGATACTTTGTACATGAAGTATGCTTTTAGTGAAGCTGGATTGTACCACGAGGCAATGCTGACTAAGAAGGTTGTTCATTTAGACGTGAAGAGGAGAAAGGAGTTTGTTCAGCTAATGTTACGGAAAATGCTCTCACTTAGGAACAGAAGGATTACCATATTCGGAGTCACGTATAAGAGCCGGGTTCTCGATCTCACAAGATCACCTGCGATTAGCGTATGCAAAGCCCTACTGAGAGAGGGTGCTTTCCTCCACATATATGAGCCGTCAGTAGATGAGCCAAGAATCCGGCAACTTCTTGGTAATCCTGAAGCAGTGGAACATTTCGATGATGATCCTATAGAGGCATGTAATGGCGCACATGCAGTTGCATTTTTGGTGCCAATGCACCAGCTACAATTTAATTTTCAAGGAATATTCAATGTGATGACAGACCAACCAGGAGGTCGATATTTGTTTATGGGCTGGCACATGAATGTCAATTTCGACATTCTGAGACAGATGGGCTTCCTAGTTTATATTAGTGGAAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

406

Amino Acids

45.62

Weight (kDa)

7.06

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 6 - 133 4.1e-22 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 164 - 245 8.4e-16 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 281 - 371 1.4e-10 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 898
Acc36I ACCTGC 2 cut(s) 298, 898
AccB1I GGYRCC 2 cut(s) 581, 1063
AccII CGCG 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 2 cut(s) 272, 460
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 1013
AcoI YGGCCR 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 1014
AfaI GTAC 3 cut(s) 428, 695, 728
AfiI CCNNNNNNNGG 2 cut(s) 168, 281
AgsI TTSAA 5 cut(s) 101, 350, 443, 1094, 1105
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 1 cut(s) 1123
AluBI AGCT 4 cut(s) 561, 719, 796, 1078
AluI AGCT 4 cut(s) 561, 719, 796, 1078
Alw26I GTCTC 1 cut(s) 1174
AlwI GGATC 1 cut(s) 1013
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 2 cut(s) 283, 667
AspLEI GCGC 1 cut(s) 1043
AsuC2I CCSGG 2 cut(s) 336, 866
AsuHPI GGTGA 1 cut(s) 879
AxyI CCTNAGG 2 cut(s) 143, 356
BalI TGGCCA 1 cut(s) 285
BanI GGYRCC 2 cut(s) 581, 1063
BanII GRGCYC 1 cut(s) 341
BauI CACGAG 1 cut(s) 731
BbsI GAAGAC 1 cut(s) 271
BccI CCATC 1 cut(s) 1180
BceAI ACGGC 2 cut(s) 290, 934
BciT130I CCWGG 1 cut(s) 1125
BcnI CCSGG 2 cut(s) 336, 866
BcoDI GTCTC 1 cut(s) 1174
BfaI CTAG 2 cut(s) 342, 1196
BfmI CTRYAG 2 cut(s) 38, 1023
BfuAI ACCTGC 2 cut(s) 298, 898
Bme1390I CCNGG 3 cut(s) 336, 866, 1125
BmgBI CACGTC 1 cut(s) 769
BmiI GGNNCC 3 cut(s) 362, 583, 1065
BmrFI CCNGG 3 cut(s) 336, 866, 1125
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 64, 603
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 271
BpuMI CCSGG 2 cut(s) 336, 866
BsaAI YACGTR 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 1017
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 281
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 470, 633
Bse21I CCTNAGG 2 cut(s) 143, 356
Bse3DI GCAATG 3 cut(s) 413, 525, 744
Bse8I GATNNNNATC 1 cut(s) 1017
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 1125
BseJI GATNNNNATC 1 cut(s) 1017
BseLI CCNNNNNNNGG 2 cut(s) 168, 281
BseMI GCAATG 3 cut(s) 413, 525, 744
BseMII CTCAG 3 cut(s) 347, 908, 1169
BseNI ACTGG 2 cut(s) 470, 633
BseRI GAGGAG 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 285, 669
BshNI GGYRCC 2 cut(s) 581, 1063
BsiSI CCGG 5 cut(s) 27, 320, 335, 865, 973
BslFI GGGAC 2 cut(s) 416, 452
BslI CCNNNNNNNGG 2 cut(s) 168, 281
BsmAI GTCTC 1 cut(s) 1174
BsmFI GGGAC 2 cut(s) 416, 452
BsnI GGCC 2 cut(s) 285, 669
Bsp1286I GDGCHC 1 cut(s) 341
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 2 cut(s) 426, 693
Bsp143I GATC 4 cut(s) 212, 874, 884, 1018
BspACI CCGC 2 cut(s) 272, 460
BspANI GGCC 2 cut(s) 285, 669
BspCNI CTCAG 3 cut(s) 348, 909, 1170
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 3 cut(s) 362, 583, 1065
BspMI ACCTGC 2 cut(s) 298, 898
BspPI GGATC 1 cut(s) 1013
BspT107I GGYRCC 2 cut(s) 581, 1063
BsrDI GCAATG 3 cut(s) 413, 525, 744
BsrFI RCCGGY 1 cut(s) 26
BsrGI TGTACA 2 cut(s) 426, 693
BsrI ACTGG 2 cut(s) 470, 633
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 4 cut(s) 212, 874, 884, 1018
BssSI CACGAG 1 cut(s) 731
Bst2BI CACGAG 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 1125
Bst4CI ACNGT 2 cut(s) 42, 423
Bst6I CTCTTC 1 cut(s) 767
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 2 cut(s) 426, 693
BstBAI YACGTR 1 cut(s) 855
BstC8I GCNNGC 2 cut(s) 525, 1151
BstDEI CTNAG 7 cut(s) 143, 356, 747, 821, 917, 1178, 1218
BstFNI CGCG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 1043
BstKTI GATC 4 cut(s) 215, 877, 887, 1021
BstMAI GTCTC 1 cut(s) 1174
BstMBI GATC 4 cut(s) 212, 874, 884, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 506, 515, 524
BstNI CCWGG 1 cut(s) 1125
BstNSI RCATGY 2 cut(s) 1035, 1049
BstSCI CCNGG 3 cut(s) 334, 864, 1123
BstSFI CTRYAG 2 cut(s) 38, 1023
BstUI CGCG 1 cut(s) 462
BstV2I GAAGAC 1 cut(s) 271
Bsu36I CCTNAGG 2 cut(s) 143, 356
BsuRI GGCC 2 cut(s) 285, 669
BtrI CACGTC 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 2 cut(s) 477, 1005
BveI ACCTGC 2 cut(s) 298, 898
Cac8I GCNNGC 2 cut(s) 525, 1151
CfoI GCGC 1 cut(s) 1043
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 3 cut(s) 427, 694, 727
CviAII CATG 7 cut(s) 220, 430, 643, 697, 1032, 1046, 1156
CviQI GTAC 3 cut(s) 427, 694, 727
DdeI CTNAG 7 cut(s) 143, 356, 747, 821, 917, 1178, 1218
DpnI GATC 4 cut(s) 214, 876, 886, 1020
DpnII GATC 4 cut(s) 212, 874, 884, 1018
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
EciI GGCGGA 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 1014
Eco81I CCTNAGG 2 cut(s) 143, 356
EcoRII CCWGG 1 cut(s) 1123
EcoT38I GRGCYC 1 cut(s) 341
FaeI CATG 7 cut(s) 223, 433, 646, 700, 1035, 1049, 1159
FaqI GGGAC 2 cut(s) 416, 452
FatI CATG 7 cut(s) 219, 429, 642, 696, 1031, 1045, 1155
FriOI GRGCYC 1 cut(s) 341
FspBI CTAG 2 cut(s) 342, 1196
GlaI GCGC 1 cut(s) 1042
HaeIII GGCC 2 cut(s) 285, 669
HapII CCGG 5 cut(s) 27, 320, 335, 865, 973
HhaI GCGC 1 cut(s) 1043
Hin1II CATG 7 cut(s) 223, 433, 646, 700, 1035, 1049, 1159
Hin6I GCGC 1 cut(s) 1041
HinP1I GCGC 1 cut(s) 1041
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 3 cut(s) 230, 849, 969
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 5 cut(s) 27, 320, 335, 865, 973
HphI GGTGA 1 cut(s) 879
Hpy166II GTNNAC 2 cut(s) 58, 487
Hpy188I TCNGA 2 cut(s) 848, 1179
Hpy188III TCNNGA 6 cut(s) 128, 320, 342, 350, 872, 992
Hpy8I GTNNAC 2 cut(s) 58, 487
HpyAV CCTTC 4 cut(s) 125, 392, 745, 825
HpyCH4III ACNGT 2 cut(s) 42, 423
HpyCH4IV ACGT 5 cut(s) 191, 405, 489, 768, 854
HpyCH4V TGCA 7 cut(s) 298, 418, 518, 906, 1049, 1055, 1072
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 515, 524
HpyF3I CTNAG 7 cut(s) 143, 356, 747, 821, 917, 1178, 1218
HpySE526I ACGT 5 cut(s) 191, 405, 489, 768, 854
Hsp92II CATG 7 cut(s) 223, 433, 646, 700, 1035, 1049, 1159
HspAI GCGC 1 cut(s) 1041
Kpn2I TCCGGA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 4 cut(s) 212, 874, 884, 1018
LweI GCATC 2 cut(s) 64, 603
MaeI CTAG 2 cut(s) 342, 1196
MaeII ACGT 5 cut(s) 191, 405, 489, 768, 854
MaeIII GTNAC 2 cut(s) 801, 850
MalI GATC 4 cut(s) 214, 876, 886, 1020
MboI GATC 4 cut(s) 212, 874, 884, 1018
MboII GAAGA 4 cut(s) 276, 401, 629, 784
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 341
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 8 cut(s) 117, 225, 299, 438, 660, 1082, 1087, 1165
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 1 cut(s) 858
MmeI TCCRAC 1 cut(s) 580
Mox20I TGGCCA 1 cut(s) 285
MroI TCCGGA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 285
MseI TTAA 4 cut(s) 386, 437, 486, 1086
MslI CAYNNNNRTG 3 cut(s) 942, 1011, 1158
Msp20I TGGCCA 1 cut(s) 285
MspI CCGG 5 cut(s) 27, 320, 335, 865, 973
MspR9I CCNGG 3 cut(s) 336, 866, 1125
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 1125
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 506, 515, 524
NciI CCSGG 2 cut(s) 336, 866
NdeII GATC 4 cut(s) 212, 874, 884, 1018
NlaIII CATG 7 cut(s) 223, 433, 646, 700, 1035, 1049, 1159
NlaIV GGNNCC 3 cut(s) 362, 583, 1065
NmuCI GTSAC 1 cut(s) 850
NspI RCATGY 2 cut(s) 1035, 1049
PaqCI CACCTGC 1 cut(s) 898
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 2 cut(s) 230, 969
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
Ppu21I YACGTR 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 1123
PspGI CCWGG 1 cut(s) 1123
PspN4I GGNNCC 3 cut(s) 362, 583, 1065
RsaI GTAC 3 cut(s) 428, 695, 728
RsaNI GTAC 3 cut(s) 427, 694, 727
RseI CAYNNNNRTG 3 cut(s) 942, 1011, 1158
SaqAI TTAA 4 cut(s) 386, 437, 486, 1086
Sau3AI GATC 4 cut(s) 212, 874, 884, 1018
SchI GAGTC 1 cut(s) 858
ScrFI CCNGG 3 cut(s) 336, 866, 1125
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 2 cut(s) 64, 603
SfcI CTRYAG 2 cut(s) 38, 1023
SmiMI CAYNNNNRTG 3 cut(s) 942, 1011, 1158
Sse9I AATT 8 cut(s) 117, 225, 299, 438, 660, 1082, 1087, 1165
SsiI CCGC 2 cut(s) 272, 460
SspI AATATT 1 cut(s) 1101
SspMI CTAG 2 cut(s) 342, 1196
StyD4I CCNGG 3 cut(s) 334, 864, 1123
TaaI ACNGT 2 cut(s) 42, 423
TaiI ACGT 5 cut(s) 194, 408, 492, 771, 857
TaqI TCGA 8 cut(s) 6, 48, 215, 237, 873, 1011, 1132, 1170
TasI AATT 8 cut(s) 117, 225, 299, 438, 660, 1082, 1087, 1165
TatI WGTACW 2 cut(s) 426, 693
TfiI GAWTC 2 cut(s) 230, 969
Tru1I TTAA 4 cut(s) 386, 437, 486, 1086
Tru9I TTAA 4 cut(s) 386, 437, 486, 1086
TscAI CASTG 2 cut(s) 477, 1005
TseFI GTSAC 1 cut(s) 850
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 6 cut(s) 411, 545, 695, 713, 749, 1172
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 2 cut(s) 477, 1005
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 2 cut(s) 1035, 1049
XspI CTAG 2 cut(s) 342, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.