Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Forward (+)

5644799 .. 5656096

Gene Structure 11298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4854 bp

ATGGGTTTTAAGGCAATAGATTGGTATTGTCAACCAGAAGCTAATGGGGTATGGGCCAAAGCAGTGAGTGCTTTTGGCTCATACACTCCTTGTGCAATGGACTCTATGGTCATATGTATTTCTCATTTAGTTCTTTTGGGATTGTGCTGCTATCGAGTTTGGATGATCAAGAAGAATTTGAAAGCCCGGAGGTTCAGGTTGAGGTCAAACTACTATAACTACTTGCTGGGATTGTTGGCTGGTTACTCCACTGCTGAGCCTCTACTGAGGTTGGTGATGGGTTTATCACTCTTTAACCCGTTTGGAAGAACTGGCTTTGCTCCTTTTGAGGTGACTTCCTCGTTCGTTGAAGCTCTTGCTTGGTGCTCTATGCTAATTTTAATTGGCTTGGAAACTAAGATTTACATTCGGGAATTCCGATGGTATGTAAGGTTTGGAGTCCTTTATGTCTTGGTAGGAGATGCTGTGGTGCTAAATCTAGTTCTTGGAGTGACAGATTCATACAGCAGATCTGCTCTGTATCTGTACATAAGCACCGTCTGTTGCCAGGTGCTGTTTGGAATTCTTCTTCTCATCTATGTTCCGAATTTAGATCCTTATCCTGGCTACATTGTTCTGCAATCTGAGTCACTTGACAATGCTGAATATGAAGCACTACCAGGAGAAGATCAAATTTGCCCTGAGCGTCATGTTAATATATTTTCCAGAATATATTTTGGATGGATGACTCCACTCATGCAGCTAGGGTACAGAAAACCCATCACCGAAACAGATGTTTGGAAGTTGGACACATGGGATCAGACCGAGACTTTGATTAAAAGGTTTCAGGAATGTTGGGTTGAAGAATCTAAAAGGTCCAAACCATGGCTTCTGAGAGCACTGAATTGTAGCCTTGGACGAAGGTTCTGGTTGGGAGGCTTTTTCAAGATCGGCAATGATCTCTCTCAGTTTTCGGGTCCCATTCTATTAAATCATCTCTTGCAGTCAATGCAACGGGGTGATCCAGCTTGGATTGGTTATATATATGCCTTCTTAATTTTCATGGGTGTGTCATTAGGTGTGCTCTCTGAATCTCAGTATTTCCAGAATGTTATGCGTGTCGGTTTTCGGTTGAGATCAACCTTGGTTGCTGCTATATTCCGTAAATCTATAAGAATAACACATGAGGGCCGCAAGAATTTTCCAACTGGGAAGATTACGAATATGATGTCTACAGATGCTAATTCACTCCAGCAAATATGCCAACAACTTCATGGACTATGGTCCGCTCCTTTCCGTATCACTGTAGCTATGGTTCTTCTCTACCAACAATTAGGTGTTGCATCGCTTATTGGATCCTTCATGCTAGTTCTCATGATTCCCATACAGACAACTATCATCAGCAAAATGCGGAAACTGACAAAGGATGGACTGCAACAGACTGACAAGAGAGTTGGCCTCATGAATGAAATTCTAGCTGCCATGGACACTGTGAAATGTTATGCCTGGGAGACAAGTTTCCAGCAGCGAGTTCAAAGTATAAGGAACGATGAGCTCTCAAGGTTCCGTAAAGCGCAATTATTATCTGCTTTGAACAGTTTTATTCTCAACAGCATCCCAGTTGTTGTGACAGTAACTTCGTTTGGGGTATTCACTTTTCTTGGAGGTGAATTGACACCTGCGAGGGCGTTTACATCACTTTCTCTTTTTGCAGTGCTGCGCTTCCCTTTAAACATGCTGCCCAATTTATTAAGTCAGGTCGTAAATGCAAACGTATCCTTGCAGCGTTTGGAGGAACTATTTTTAACTGAGGAGAGAATTCTAGTACCTAACCCACCACTGGAACCAGGGCTTCCAGCCATCTCAATTCAGGATGGGCACTTTTCATGGAATTCAAAGGCAGAGAAACCCACATTATCAAACATCAACTTGGATATACGAGTTGGTAGCTTAGTTGCAGTTGTTGGCGGCACTGGAGAAGGAAAAACATCACTTGTATCAGCCATGCTTGGGGAGCTGCCTCCAATTGCAGATTCCAGTGTTGTAATAAGGGGGACTGTTGCTTATGTTCCCCAAGTTTCATGGATTTTCAATGCTACTGTACGTGAAAACATTTTATTTGGATCTGAATTTGAAGCTGCACGGTATTGGAAGGCAATTGATGTAACTGAGTTCCGTCATGACCTGGACTTACTTCCAGGTCGAGATCTTACGGAGATAGGTGAAAGAGGGGTCAATATTAGTGGAGGTCAAAAGCAAAGGGTTTCAATGGCCAGAGCTGTATATTCTAATTCAGATGTTTATATATTTGATGACCCATTAAGTGCTCTAGATGCTCATGTTGCTAGAGAGGTTTTCAACCACTGCATAAAGGAAGAGTTGCAGGGGAAAACTAGGGTGCTTGTCACAAATCAGCTACACTTTCTGCCTCAAGTGGATGAAATAATATTAGTCTCTGACGGTACAATTAAAGAGAAGGGAACCTTTAAGGATCTCTCTGAAAACAGTTTGCTGTTCCAGAAGCTTATGGAAAATGCCGGGAAAATGGAAGAACATGTAGACGAAAAGGAAGACAGCAAAACTAATTACCAGGAAATCTCACTTCCTGTGTCTAATGGGGTGGTGAATGACTTGCCAAAAGATGCAAGCTACACCAAGAAAGGGAAAGGGATGAGATCTGTACTCATTAAGCAAGAGGAACGGGAAACAGGTGTTGTAAGTTGGAAAATTTTGCAGAGGTATAAACATGCATTAGGAGGCCTATGGGTGGTCATGGTTCTATTTACATGTTATACACTGACAGAAGTTCTTCGAGTTTCAAGCAGCACATGGTTAAGTTTTTGGACAGACCAAAGCACGTCAAAGAGTTATGCACCTGGTTTCTACATTCTTATTTATGCAATTCTATCACTTGGTCAGGTAACGGTGACTCTGACGAACTCATTTTGGCTAATCACTTCAAGTCTTCATGCAGCCAGAAAATTGCATGATGCCCTGCTACAGGCTATACTAAAAGCTCCAATGGTCTTCTTTCACACTAACCCAACTGGAAGGATAATCAATAGGTTTGCAAAGGATCTGGGTGACATAGATCGCACTGTAGCCAATTTTATGAACATGTTTCTGGGTCAAGTGTGGCAGCTCATTTCGACTTTTGTGCTCATAGGTATAGTGAGCACAATATCCCTCTGGGCCATAATGCCACTTCTAATTTTGTTCTATGCAGCCTATCTATTCTATCAGAGCACATCCCGTGAAGTGAAACGCTTGGATTCCATTACCAGATCTCCTGTTTATGCACAGTTTGGAGAAGCATTAAATGGTTTGTCATCAATTCGTGCCTATAAAGCTTATGATCGGATGGCAAAGATCAGTGGAAGGTCTATGGATAATAACATCAGATTCACCCTTGTGAATATTAGTTCAAACCGCTGGCTTACGATAAGGTTGGAAACACTAGGAGGTATCATGATATGGGTGATAGCAACCTTTGCTGTCATGCAAAATGGAAGAGCAGAAAACCAAGTACAATTTGCATCCACAATGGGTCTACTTCTTACTTATACTTTGAATATCACAAGTCTGTTGAGTGGTGTTCTTAGACAAGCTAGTAGGGCTGAAAATAGTTTAAATGCTGTTGAGCGGGTTGGAACATATATTGAATTGCCTTCTGAGGCTCCAGCTGTTATTGAAAGCAACCGTCCCCCACACGGGTGGCCATCATCAGGATCAATCAAGTTTGAGGATGTTGTCCTCCGTTATAGGCCTGGACTTCCACCAGTACTGCACGGATTATCCTTCACAGTTTCTGCAAGTGAGAAGTTAGGAATAGTTGGAAGAACTGGTGCCGGCAAATCTAGCATGATTAATGCATTGTTTAGGATAGTAGAAATAGAAAAAGGAAGCATCTTGATTGATGGGTGTGATGTTGCTAAGTTTGGATTGGCAGATTTGCGAAAAGTTCTTAGCATCATACCCCAATCACCAGTTCTCTTTTCAGGAACTGTACGGTTTAATCTTGATCCTTTCAGTGAGCATAATGATGCTGACCTCTGGGAAGCCCTAGAAAGGGCGCATCTAAAGGATGTCATTAGAAGGAATTCCTTCGGTCTCGATGCTGAGGTTTCGGAGGGTGGTGAGAATTTCAGTGTTGGACAGAGGCAGCTAATAAGTCTTGCTAGAGCATTGCTACGGAGATCAAAGATTCTTATTCTTGATGAAGCAACAGCAGCTGTGGATGTTAGAACGGATGCTCTCATCCAAAAAACCATACGTGAAGAATTCAAATCATGCACCATGCTCATTATTGCTCACAGACTGAACACCATTATTGACTGTGATCGAATCCTTGTTCTTGATGCTGGTCAGGTCCTAGAACATGGTTCACCAGAAGAATTACTGCTAAATGAAGTGAGCGCATTCTCCAAGATGGTTAGGAGTACAGGACCTTCTAATGCTCAGTACTTACGCAGCCTGGTTTTCAAAGGCAAGCAGAATAAGGTGAATGGAGAGGAAACTGAGCAACTGGTTGGCCTGAGTCAGAGGAGATGGTTAGCCTCTTCGCGCTGGGCCGCTGCTGCCCAATTTGCATTGGCTTTAAGTCTCACATCCTCACAGAACGATCTCCAAAGGTTAGATATTGGAGACGAGGACAATATTCTCATGAAAACAAAGGATGCAGTTATAACATTACAGGGAGTTTTGGAAGGAAAGCATGATGAAGATATAGACATATCACTAAATCAGCACCATATTCCAAGAGAAGGGTGGTGGTCAGCTTTGTTCAGAATAGTTGAAGGTTTGGCCGTGATGAGCAAGCTGGCTCAGAACAGACTTCACCCTTTAGAAGACGACGATTTTGAAGACAACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1618

Amino Acids

181.46

Weight (kDa)

8.2

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	303 - 570	4e-39	ABC transporter transmembrane region
ABC_tran	PF00005	632 - 767	3.5e-18	ABC transporter
ABC_membrane	PF00664	918 - 1179	8e-31	ABC transporter transmembrane region
ABC_tran	PF00005	1255 - 1403	7.9e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4664
AarI	CACCTGC	1 cut(s)	1666
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	1666
AccB1I	GGYRCC	1 cut(s)	3824
AccB7I	CCANNNNNTGG	1 cut(s)	864
AccBSI	CCGCTC	2 cut(s)	1268, 3622
AccI	GTMKAC	3 cut(s)	1211, 2538, 3529
AccII	CGCG	1 cut(s)	4543
AciI	CCGC	7 cut(s)	1171, 1266, 1390, 1947, 3409, 3622, 4551
AcoI	YGGCCR	3 cut(s)	2250, 3695, 4782
AflIII	ACRYGT	3 cut(s)	2533, 2765, 3096
AjiI	CACGTC	1 cut(s)	2838
AjuI	GAANNNNNNNTTGG	4 cut(s)	1996, 2028, 3951, 3983
AleI	CACNNNNGTG	2 cut(s)	3389, 3691
Alw21I	GWGCWC	8 cut(s)	368, 880, 1065, 1536, 2308, 3141, 3158, 3227
Alw26I	GTCTC	6 cut(s)	800, 1484, 2437, 4094, 4586, 4617
AlwNI	CAGNNNCTG	4 cut(s)	553, 3788, 3983, 4211
ArsI	GACNNNNNNTTYG	8 cut(s)	793, 825, 1193, 1225, 1600, 1632, 4820, 4852
AseI	ATTAAT	1 cut(s)	3846
Asp700I	GAANNNNTTC	3 cut(s)	2787, 4078, 4082
AspLEI	GCGC	5 cut(s)	1555, 1701, 4054, 4397, 4545
AspS9I	GGNCC	9 cut(s)	54, 855, 956, 1168, 1263, 3171, 4348, 4424, 4548
AsuC2I	CCSGG	2 cut(s)	187, 2518
AvaII	GGWCC	5 cut(s)	855, 956, 1263, 4348, 4424
BaeGI	GKGCMC	1 cut(s)	1860
BalI	TGGCCA	2 cut(s)	2252, 3697
BamHI	GGATCC	1 cut(s)	1334
BanI	GGYRCC	1 cut(s)	3824
BanII	GRGCYC	1 cut(s)	1536
BarI	GAAGNNNNNNTAC	2 cut(s)	4411, 4443
BbsI	GAAGAC	5 cut(s)	2556, 2936, 2998, 4833, 4848
Bbv12I	GWGCWC	8 cut(s)	368, 880, 1065, 1536, 2308, 3141, 3158, 3227
BbvCI	CCTCAGC	1 cut(s)	4098
BceAI	ACGGC	1 cut(s)	4769
BcgI	CGANNNNNNTGC	2 cut(s)	3118, 3152
BciVI	GTATCC	1 cut(s)	1765
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	187, 2518
BcoDI	GTCTC	6 cut(s)	800, 1484, 2437, 4094, 4586, 4617
BfmI	CTRYAG	5 cut(s)	1212, 1284, 2978, 3078, 4850
BfuAI	ACCTGC	1 cut(s)	1666
BfuI	GTATCC	1 cut(s)	1765
BglII	AGATCT	4 cut(s)	509, 2185, 2654, 3263
BlpI	GCTNAGC	1 cut(s)	255
BmcAI	AGTACT	2 cut(s)	3762, 4442
Bme18I	GGWCC	5 cut(s)	855, 956, 1263, 4348, 4424
BmgBI	CACGTC	1 cut(s)	2838
BmgT120I	GGNCC	9 cut(s)	54, 855, 956, 1168, 1263, 3171, 4348, 4424, 4548
BmiI	GGNNCC	8 cut(s)	957, 958, 1336, 1544, 1824, 2461, 3657, 3826
BmrI	ACTGGG	2 cut(s)	1197, 1592
BmuI	ACTGGG	2 cut(s)	1197, 1592
BoxI	GACNNNNGTC	1 cut(s)	1261
BpiI	GAAGAC	5 cut(s)	2556, 2936, 2998, 4833, 4848
BplI	GAGNNNNNCTC	2 cut(s)	1422, 1454
BpmI	CTGGAG	3 cut(s)	1214, 1974, 3642
Bpu10I	CCTNAGC	2 cut(s)	681, 4098
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	1522, 2394
BpuMI	CCSGG	2 cut(s)	187, 2518
BsaAI	YACGTR	2 cut(s)	2084, 4253
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	4094
BsaJI	CCNNGG	6 cut(s)	863, 892, 1122, 1461, 1485, 1826
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 480, 3250, 3280
Bse118I	RCCGGY	1 cut(s)	3827
Bse3DI	GCAATG	3 cut(s)	102, 940, 4163
Bse8I	GATNNNNATC	1 cut(s)	597
BseDI	CCNNGG	6 cut(s)	863, 892, 1122, 1461, 1485, 1826
BseJI	GATNNNNATC	1 cut(s)	597
BseMI	GCAATG	3 cut(s)	102, 940, 4163
BseRI	GAGGAG	2 cut(s)	1805, 4537
BseSI	GKGCMC	1 cut(s)	1860
BseYI	CCCAGC	2 cut(s)	226, 4545
BsgI	GTGCAG	2 cut(s)	2103, 3749
Bsh1236I	CGCG	1 cut(s)	4543
BshNI	GGYRCC	1 cut(s)	3824
BsiHKAI	GWGCWC	8 cut(s)	368, 880, 1065, 1536, 2308, 3141, 3158, 3227
BsiSI	CCGG	3 cut(s)	187, 2517, 3828
BslFI	GGGAC	3 cut(s)	942, 2047, 3666
BsmAI	GTCTC	6 cut(s)	800, 1484, 2437, 4094, 4586, 4617
BsmBI	CGTCTC	1 cut(s)	4617
BsmFI	GGGAC	3 cut(s)	942, 2047, 3666
BsmI	GAATGC	1 cut(s)	4397
Bso31I	GGTCTC	1 cut(s)	4094
Bsp1286I	GDGCHC	9 cut(s)	368, 880, 1065, 1536, 1860, 2308, 3141, 3158, 3227
Bsp1407I	TGTACA	1 cut(s)	525
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	2 cut(s)	863, 1461
BspACI	CCGC	7 cut(s)	1171, 1266, 1390, 1947, 3409, 3622, 4551
BspFNI	CGCG	1 cut(s)	4543
BspHI	TCATGA	5 cut(s)	1353, 1440, 2158, 3447, 4641
BspLI	GGNNCC	8 cut(s)	957, 958, 1336, 1544, 1824, 2461, 3657, 3826
BspMI	ACCTGC	1 cut(s)	1666
BspQI	GCTCTTC	1 cut(s)	3484
BspT107I	GGYRCC	1 cut(s)	3824
BspTNI	GGTCTC	1 cut(s)	4094
BsrBI	CCGCTC	2 cut(s)	1268, 3622
BsrDI	GCAATG	3 cut(s)	102, 940, 4163
BsrFI	RCCGGY	1 cut(s)	3827
BsrGI	TGTACA	1 cut(s)	525
BssAI	RCCGGY	1 cut(s)	3827
BssECI	CCNNGG	6 cut(s)	863, 892, 1122, 1461, 1485, 1826
BssT1I	CCWWGG	4 cut(s)	863, 892, 1122, 1461
Bst6I	CTCTTC	3 cut(s)	2349, 3484, 4543
BstAPI	GCANNNNNTGC	3 cut(s)	68, 988, 3470
BstAUI	TGTACA	1 cut(s)	525
BstBAI	YACGTR	2 cut(s)	2084, 4253
BstC8I	GCNNGC	6 cut(s)	2626, 3413, 3829, 4469, 4796, 4800
BstDSI	CCRYGG	2 cut(s)	863, 1461
BstENI	CCTNNNNNAGG	1 cut(s)	2978
BstFNI	CGCG	1 cut(s)	4543
BstHHI	GCGC	5 cut(s)	1555, 1701, 4054, 4397, 4545
BstMAI	GTCTC	6 cut(s)	800, 1484, 2437, 4094, 4586, 4617
BstNSI	RCATGY	5 cut(s)	1717, 2537, 2729, 2769, 3100
BstPAI	GACNNNNGTC	1 cut(s)	1261
BstSFI	CTRYAG	5 cut(s)	1212, 1284, 2978, 3078, 4850
BstSLI	GKGCMC	1 cut(s)	1860
BstUI	CGCG	1 cut(s)	4543
BstV2I	GAAGAC	5 cut(s)	2556, 2936, 2998, 4833, 4848
BstX2I	RGATCY	9 cut(s)	509, 592, 1334, 2102, 2185, 2470, 2654, 3055, 3263
BstXI	CCANNNNNNTGG	1 cut(s)	3693
BstYI	RGATCY	9 cut(s)	509, 592, 1334, 2102, 2185, 2470, 2654, 3055, 3263
BsuI	GTATCC	1 cut(s)	1765
BtgI	CCRYGG	2 cut(s)	863, 1461
BtgZI	GCGATG	1 cut(s)	1308
BtrI	CACGTC	1 cut(s)	2838
BtsI	GCAGTG	4 cut(s)	69, 249, 1698, 2341
BveI	ACCTGC	1 cut(s)	1666
Cac8I	GCNNGC	6 cut(s)	2626, 3413, 3829, 4469, 4796, 4800
CaiI	CAGNNNCTG	4 cut(s)	553, 3788, 3983, 4211
CciI	TCATGA	5 cut(s)	1353, 1440, 2158, 3447, 4641
CfoI	GCGC	5 cut(s)	1555, 1701, 4054, 4397, 4545
Cfr10I	RCCGGY	1 cut(s)	3827
Cfr13I	GGNCC	9 cut(s)	54, 855, 956, 1168, 1263, 3171, 4348, 4424, 4548
CseI	GACGC	1 cut(s)	674
CsiI	ACCWGGT	1 cut(s)	2854
CspCI	CAANNNNNGTGG	2 cut(s)	2203, 2238
DraI	TTTAAA	2 cut(s)	1710, 3609
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	2250, 3695, 4782
Eam1104I	CTCTTC	3 cut(s)	2349, 3484, 4543
EarI	CTCTTC	3 cut(s)	2349, 3484, 4543
Ecl136II	GAGCTC	1 cut(s)	1534
Eco130I	CCWWGG	4 cut(s)	863, 892, 1122, 1461
Eco147I	AGGCCT	2 cut(s)	2739, 3745
Eco24I	GRGCYC	1 cut(s)	1536
Eco31I	GGTCTC	1 cut(s)	4094
Eco47I	GGWCC	5 cut(s)	855, 956, 1263, 4348, 4424
Eco53kI	GAGCTC	1 cut(s)	1534
EcoICRI	GAGCTC	1 cut(s)	1534
EcoNI	CCTNNNNNAGG	1 cut(s)	2978
EcoO109I	RGGNCCY	3 cut(s)	956, 4348, 4424
EcoRI	GAATTC	6 cut(s)	413, 561, 1797, 1870, 4078, 4259
EcoT14I	CCWWGG	4 cut(s)	863, 892, 1122, 1461
EcoT22I	ATGCAT	2 cut(s)	2731, 3853
EcoT38I	GRGCYC	1 cut(s)	1536
ErhI	CCWWGG	4 cut(s)	863, 892, 1122, 1461
Esp3I	CGTCTC	1 cut(s)	4617
FalI	AAGNNNNNCTT	2 cut(s)	2447, 2479
FaqI	GGGAC	3 cut(s)	942, 2047, 3666
FauI	CCCGC	1 cut(s)	3615
FauNDI	CATATG	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	3 cut(s)	1211, 2538, 3529
FriOI	GRGCYC	1 cut(s)	1536
GlaI	GCGC	5 cut(s)	1554, 1700, 4053, 4396, 4544
GsaI	CCCAGC	2 cut(s)	230, 4549
GsuI	CTGGAG	3 cut(s)	1214, 1974, 3642
HapII	CCGG	3 cut(s)	187, 2517, 3828
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	5 cut(s)	1555, 1701, 4054, 4397, 4545
Hin6I	GCGC	5 cut(s)	1553, 1699, 4052, 4395, 4543
HinP1I	GCGC	5 cut(s)	1553, 1699, 4052, 4395, 4543
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HindIII	AAGCTT	2 cut(s)	2501, 3327
HpaII	CCGG	3 cut(s)	187, 2517, 3828
Hpy166II	GTNNAC	6 cut(s)	32, 1212, 1671, 2539, 3530, 4364
Hpy8I	GTNNAC	6 cut(s)	32, 1212, 1671, 2539, 3530, 4364
Hpy99I	CGWCG	1 cut(s)	4835
HpyCH4IV	ACGT	4 cut(s)	1752, 2083, 2837, 4252
HpySE526I	ACGT	4 cut(s)	1752, 2083, 2837, 4252
HspAI	GCGC	5 cut(s)	1553, 1699, 4052, 4395, 4543
KflI	GGGWCCC	1 cut(s)	956
KroI	GCCGGC	1 cut(s)	3827
KroNI	GCCGGC	1 cut(s)	3829
Ksp22I	TGATCA	1 cut(s)	165
LguI	GCTCTTC	1 cut(s)	3484
LmnI	GCTCC	5 cut(s)	325, 1273, 1993, 3001, 3661
MabI	ACCWGGT	1 cut(s)	2854
MaeII	ACGT	4 cut(s)	1752, 2083, 2837, 4252
MbiI	CCGCTC	2 cut(s)	1268, 3622
MfeI	CAATTG	2 cut(s)	2004, 2136
MflI	RGATCY	9 cut(s)	509, 592, 1334, 2102, 2185, 2470, 2654, 3055, 3263
MhlI	GDGCHC	9 cut(s)	368, 880, 1065, 1536, 1860, 2308, 3141, 3158, 3227
MlsI	TGGCCA	2 cut(s)	2252, 3697
MluNI	TGGCCA	2 cut(s)	2252, 3697
MlyI	GAGTC	6 cut(s)	95, 447, 635, 721, 2902, 4525
MmeI	TCCRAC	7 cut(s)	765, 1208, 2681, 3408, 3607, 3793, 4111
Mox20I	TGGCCA	2 cut(s)	2252, 3697
Mph1103I	ATGCAT	2 cut(s)	2731, 3853
MroNI	GCCGGC	1 cut(s)	3827
MroXI	GAANNNNTTC	3 cut(s)	2787, 4078, 4082
MscI	TGGCCA	2 cut(s)	2252, 3697
MslI	CAYNNNNRTG	4 cut(s)	1046, 3389, 3691, 4020
Msp20I	TGGCCA	2 cut(s)	2252, 3697
MspA1I	CMGCKG	4 cut(s)	3411, 3662, 4211, 4553
MspI	CCGG	3 cut(s)	187, 2517, 3828
MunI	CAATTG	2 cut(s)	2004, 2136
Mva1269I	GAATGC	1 cut(s)	4397
MvnI	CGCG	1 cut(s)	4543
NaeI	GCCGGC	1 cut(s)	3829
NciI	CCSGG	2 cut(s)	187, 2518
NcoI	CCATGG	2 cut(s)	863, 1461
NdeI	CATATG	1 cut(s)	113
NgoMIV	GCCGGC	1 cut(s)	3827
NlaIV	GGNNCC	8 cut(s)	957, 958, 1336, 1544, 1824, 2461, 3657, 3826
NmuCI	GTSAC	7 cut(s)	331, 490, 627, 1606, 2383, 2905, 3062
NsiI	ATGCAT	2 cut(s)	2731, 3853
NspI	RCATGY	5 cut(s)	1717, 2537, 2729, 2769, 3100
OliI	CACNNNNGTG	2 cut(s)	3389, 3691
PagI	TCATGA	5 cut(s)	1353, 1440, 2158, 3447, 4641
PaqCI	CACCTGC	1 cut(s)	1666
PceI	AGGCCT	2 cut(s)	2739, 3745
PciI	ACATGT	3 cut(s)	2533, 2765, 3096
PciSI	GCTCTTC	1 cut(s)	3484
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PctI	GAATGC	1 cut(s)	4397
PdiI	GCCGGC	1 cut(s)	3829
PdmI	GAANNNNTTC	3 cut(s)	2787, 4078, 4082
PfeI	GAWTC	9 cut(s)	497, 845, 1070, 1357, 2012, 3251, 3381, 4183, 4323
PflMI	CCANNNNNTGG	1 cut(s)	864
PleI	GAGTC	6 cut(s)	95, 446, 634, 721, 2902, 4524
PpsI	GAGTC	6 cut(s)	95, 446, 634, 721, 2902, 4524
Ppu21I	YACGTR	2 cut(s)	2084, 4253
PpuMI	RGGWCCY	3 cut(s)	956, 4348, 4424
PscI	ACATGT	3 cut(s)	2533, 2765, 3096
PshAI	GACNNNNGTC	1 cut(s)	1261
PshBI	ATTAAT	1 cut(s)	3846
PsiI	TTATAA	1 cut(s)	4664
Psp124BI	GAGCTC	1 cut(s)	1536
Psp5II	RGGWCCY	3 cut(s)	956, 4348, 4424
PspFI	CCCAGC	2 cut(s)	226, 4545
PspN4I	GGNNCC	8 cut(s)	957, 958, 1336, 1544, 1824, 2461, 3657, 3826
PspPI	GGNCC	9 cut(s)	54, 855, 956, 1168, 1263, 3171, 4348, 4424, 4548
PspPPI	RGGWCCY	3 cut(s)	956, 4348, 4424
PsrI	GAACNNNNNNTAC	2 cut(s)	1278, 1310
PstNI	CAGNNNCTG	4 cut(s)	553, 3788, 3983, 4211
PsuI	RGATCY	9 cut(s)	509, 592, 1334, 2102, 2185, 2470, 2654, 3055, 3263
PvuII	CAGCTG	2 cut(s)	3662, 4211
RseI	CAYNNNNRTG	4 cut(s)	1046, 3389, 3691, 4020
SacI	GAGCTC	1 cut(s)	1536
SapI	GCTCTTC	1 cut(s)	3484
Sau96I	GGNCC	9 cut(s)	54, 855, 956, 1168, 1263, 3171, 4348, 4424, 4548
ScaI	AGTACT	2 cut(s)	3762, 4442
SchI	GAGTC	6 cut(s)	95, 447, 635, 721, 2902, 4525
SduI	GDGCHC	9 cut(s)	368, 880, 1065, 1536, 1860, 2308, 3141, 3158, 3227
SexAI	ACCWGGT	1 cut(s)	2854
SfcI	CTRYAG	5 cut(s)	1212, 1284, 2978, 3078, 4850
SinI	GGWCC	5 cut(s)	855, 956, 1263, 4348, 4424
SmiMI	CAYNNNNRTG	4 cut(s)	1046, 3389, 3691, 4020
SmlI	CTYRAG	2 cut(s)	1537, 2409
SmoI	CTYRAG	2 cut(s)	1537, 2409
SseBI	AGGCCT	2 cut(s)	2739, 3745
SsiI	CCGC	7 cut(s)	1171, 1266, 1390, 1947, 3409, 3622, 4551
SspI	AATATT	4 cut(s)	2218, 2427, 3397, 4636
SstI	GAGCTC	1 cut(s)	1536
StuI	AGGCCT	2 cut(s)	2739, 3745
StyI	CCWWGG	4 cut(s)	863, 892, 1122, 1461
TaiI	ACGT	4 cut(s)	1755, 2086, 2840, 4255
TaqI	TCGA	6 cut(s)	154, 2182, 2791, 3128, 4092, 4321
TaqII	GACCGA	2 cut(s)	818, 4076
TatI	WGTACW	6 cut(s)	525, 2659, 3505, 3760, 4418, 4440
TauI	GCSGC	3 cut(s)	1173, 1950, 4553
TfiI	GAWTC	9 cut(s)	497, 845, 1070, 1357, 2012, 3251, 3381, 4183, 4323
TseFI	GTSAC	7 cut(s)	331, 490, 627, 1606, 2383, 2905, 3062
Tsp45I	GTSAC	7 cut(s)	331, 490, 627, 1606, 2383, 2905, 3062
TspGWI	ACGGA	9 cut(s)	1130, 1265, 1535, 2144, 2207, 3725, 3783, 4186, 4241
Van91I	CCANNNNNTGG	1 cut(s)	864
VpaK11BI	GGWCC	5 cut(s)	855, 956, 1263, 4348, 4424
VspI	ATTAAT	1 cut(s)	3846
XagI	CCTNNNNNAGG	1 cut(s)	2978
XbaI	TCTAGA	1 cut(s)	2308
XceI	RCATGY	5 cut(s)	1717, 2537, 2729, 2769, 3100
XcmI	CCANNNNNNNNNTGG	3 cut(s)	554, 1250, 4743
XmiI	GTMKAC	3 cut(s)	1211, 2538, 3529
XmnI	GAANNNNTTC	3 cut(s)	2787, 4078, 4082
ZrmI	AGTACT	2 cut(s)	3762, 4442
Zsp2I	ATGCAT	2 cut(s)	2731, 3853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.