Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Forward (+)

10742076 .. 10752360

Gene Structure 10285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG119000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4530 bp

ATGACTTCTTCAATCATTGAAGCTCTTTCTTGGTGCTCTATGCTAATTTTAATTGGCTTGGAAACTAGGATTTACATTCGGGAATTCCGATGGTACGTAAGGTTTGGAGTCCTTTACGTCTTGGTAGGAGATGTTGTGCTGCTAAATCTTATTCTTGGAGTGACAGATTCCTACAGCAGATCTGCTCTGTATCTGTATATAAGCACTGTCTGTTGCCAGGTCTTGTTTGGAATTCTACTTCTCTTCTATGTCCCCAATTTGGATCCTTATCCCGGCTATGTTGTTCTGCAATCCGAGTCGCTTGACAATGCTGAATATGAAGCACTACAAGGAGAAGATCAAATTTGCCCTGAACGGCATGTTAATATATTTTCCAGAATATATTTTGGATGGATGACTCCACTTATGCAGCTAGGGTACAGAAAACCCATCACTGAAGCAGATGTTTGGAAGTTGGACACATGGGATCAGACCGAGACATTGATTAAGAGGTTTCAGGAATGTTGGGTTGAAGAATCAAAAAGGTCCAAGCCATGGCTTCTGAGAGCATTGAATTGTAGCCTTGGACGAAGGTTCTGGTTGGGAGGCTTTTTCAAGATTGGCAATGATCTCTCCCAGTTTTCGGGTCCCATTCTATTAAATCATCTCTTGCAGTCAATGCAACGAGGTGATCCAGCTTGGATGGGTTACATATATGCCTTCTTAATTTTCATTGGTGTGTCATTTGGCGTGCTCTCTGAATCTCAGTATTTCCAGAATGTTATGAGGGTCGGCTTTCGGTTGAGATCAACTTTGGTAGCTGCTATATTCCGTAAATCTATAAGAATAACGCATGAGGGCCGCAAGAATTTTCCGACTGGGAAGATAACGAATATGATGTCGACAGATGCTAATGCACTCCAGCAAATATGCCAACAACTTCACGGACTATGGTCTGCTCCTTTCCGTATCATTGTAGCTATGACTCTTCTCTACCAACAATTAGGTGTTGCATCGCTTATTGGATCCTTGATGCTAGTTCTCATGATCCCCATACAGACAACTATCATCAGCAAAATGCGGAAACTGACAAAGGATGGACTGCAACAGACTGACAAGAGAGTTGGCCTCATGAATGAAATTTTAGCGGCCATGGACACTGTGAAATGTTATGCCTGGGAGACAAGTTTCCAGCAGCGAGTTCAAAGTATACGGAATGATGAGCTCTCAAGGTTCCGTAAAGCACAATTACTATCTGCTTTGAACAGTTTTATTCTCAACAGCATCCCAGTTGTTGTGACAGTAACTTCATTTGGAGTATTCACTTTTCTTGGAGGTGAATTGACACCTGCTAGGGCGTTTACATCACTTTCTCTTTTTGCGGTGCTACGCTTTCCTTTAAACATGCTGCCCAACTTGTTAAGTCAGGTTGTAAATGCAAACGTATCCTTGCAGCGTTTGGAGGAACTATTTTTAACTGAGGAGAGAATTCTAGTACCCAACCCGCCACTGGAACCAGGGCTTCCAGCCATCTCAATTCAGGATGGGTACTTTTCATGGGATTCAAAGGCAGAGAAACCCACATTATCAAACATCAACTTAGATATACCAGTTGGAAGATTAGTTGCAGTTGTTGGGGGCACTGGAGAAGGAAAGACATCACTTATATCAGCCATGCTTGGGGAGCTGCCTCCCATTGCAGGTGCCAGTGTTGTAATCAGGGGGACTGTTGCTTATGTTCCCCAAGTTTCATGGATTTTCAATGCTACTGTACGTGAAAACATTTTATTTGGATCTGAGTTTGAAGCTGCACGATATTGGAAGGCTATTGATGTGACTGAGTTCCATCATGACCTAGACCTACTTCCAGGTCGAGATCTTACAGAGATAGGTGAAAGAGGGGTCAATATTAGCGGAGGTCAAAAGCAAAGGGTTTCTATGGCTCGAGCTGTATATTCTAATTCAGATGTTTACATATTTGACGACCCATTAAGTGCTTTAGATGCTCATGTTGCTAGAGAGGTTTTCAACCACTGTATCAAGGAAGAGTTGCAGGGGAAAACTAGGGTGCTTGTCACGAATCAGCTACACTTTCTGCCTCAAGTGGATGAAATTATATTAGTCTCTGATGGTACGATTAAAGAGAAGGGAACCTTTAAGGATCTCTCTGAAAACAGTTTGCTGTTCCAGAAGCTAATGGAAAATGCCGGGAAAATGGAAGAACATGTAGAAGAACGGGAAGCCAGCAAAACTGATAAACAGGAAACCTCACTTCCTGTGTCTAACGGGGTGGCGAATGACTTGCCAAAAGATACAAACTACACAAAGAAAGGGAAAGGGATGAGATCTGTACTCATTAGACAAGAGGAACGGGAAACAGGTGTTGTAAGTTGGAAAATTTTGCAGAGGTATAAGCATGCATTAGGAGGCCTATGGGTGGTCATGGTTCTATTTACTTGTTATACACTAACAGAAGTTCTTCGAGTTTCAAGCAGCACATGGTTAAGTTTTTGGACAGACCAAAGCACGTCAAAGAGTTATGCACCTGGATTCTACATTCTTATATATGCAATTCTGTCTATTGGTCAGGTAACAGTGACTCTGACGAACTCTTTTTGGCTTATCACTTCAAGTCTTCGTGCAGCCAGAAAATTGCATGATGCCCTGCTACATGCTATACTAAAAGCTCCAATGGTATTCTTTCACACTAACCCAATTGGAAGGATAATCAATAGGTTTGCAAAGGATCTTGGTGATATAGATCGCAATGTAGCCAACTTTATGAACATGTTTCTGGGTCAAGTGTGGCAGCTCCTTTCAACTTTTGTGCTCATAGGCATTGTGAGCACAATATCCCTCTGGGCCATAATGCCACTTCTAATTTTGTTCTATGCAGCCTATCTATTCTATCAGAGCACATCCCGTGAAGTGAAACGCATGGATTCCATTACCAGATCTCCAGTTTATGCACAGTTTGGAGAAGCATTAAATGGTTTGTCATCAATTCGTGCCTATAAAGCTTATGATCGGATGGCAAACATCAGTGGAAGGTCTATGGATAATAACATCAGATTCACCCTTGTGAATATTAGTTCAAACCGCTGGCTTACAATAAGGTTGGAAACACTAGGAGGTATCATGATCTGGGTGATTGCAACCTTTGCTGTCATGCAAAATGGAAGAGCAGAAAACCAAGTACAATTTGCATCTACAATGGGTCTACTTCTCACTTATACTTTGAATATCACTAGTCTGTTGAGTGGTGTTCTCAGACAAGCTAGCAGGGCTGAAAATAGTTTAAATGCCGTTGAGCGGGTTGGATCATATATAGAATTGCCTTCTGAGGCTCCAGCTGTTATTGAAAGCAACCGTCCTCCACATGGGTGGCCATCATCAGGATCAATCAAGTTTGAGGATGTTGTCCTCCGTTATAGGCCTGGACTTCCACCTGTACTGCACGGATTATCGTTTACAGTTTCTGCAAGTGAGAAGCTAGGAATAGTTGGAAGAACTGGTGCTGGCAAATCTAGCATGATTAACGCATTGTTTAGGATAGTAGAAATAGAAAAAGGAAGCATTTTGATTGATGGTTGTAATGTTTCTAAGTTTGGACTGACAGATTTGAGAAAAGTTCTTAGCATCATACCACAATCACCGGTTCTTTTTTCAGGAACTGTGCGGTTTAATCTTGATCCTTTCAGTGAGCATAATGATGCTGACCTTTGGGAAGCCCTGGAAAGGGCACATCTAAAGGATGTCATTAGGAGGAATTCCTTCGGTCTCGATGCTGAGGTTTCCGAGGGTGGTGAGAATTTCAGTGTTGGACAGAGGCAGCTAATAAGTCTAGCTAGAGCATTGCTACGGAGATCAAAGATTCTTGTTCTTGATGAAGCAACTGCAGCTGTGGATGTTAGAACTGATGCTCTCATCCAAAAGACCATACGTGAAGAATTCAAATCATGCACCATGCTGGTTATTGCTCACAGATTGAACACCATTATCGACTGTGATCGAATTCTTGTTCTTGATGCTGGTCAGGTCCTCGAACACGGTTCCCCAGAAGAACTACTGCTAAATGAAGAGAGCGCATTCTCCAAGATGGTCAGGAGTACAGGCCCTTCTAATGCGCAGTACTTACGCAGCCTGGTATTTGAAGGCAAGCAGAATAAGGTGAATAGAGACGAAGCTGAGCAACTGTTTGGCCAGAGCCAGAGGAGATGGTTAGCCTCTTCGCGCTGGGCAGCTGCTGCCCAATTTGCATTGGCTGTCAGTCTCACATCCTCACAGAACGATCTCCAGAGGTTAGATATTGGAGACGAGGACAATATCCTCATGAAAACAAAGGATGCAGTTATAACACTACAGGGAGTTTTGGAAGGAAAGCATGATGAAGATATAGACTTATCACTAAATCAGCACCATATTCCAAGGGAAGGGTGGTGGTCAGCTTTCTTCAGAATAGTTGAAGGTCTGGCCGTGATGGGCAGGCTGGCTCAGAACAGACTCCACCCTTTAGAAGATGACGATTTTGAAGACCAGTCTTTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1509

Amino Acids

169.6

Weight (kDa)

6.82

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	193 - 460	4e-39	ABC transporter transmembrane region
ABC_tran	PF00005	522 - 657	6.8e-19	ABC transporter
ABC_membrane	PF00664	808 - 1069	1.7e-29	ABC transporter transmembrane region
ABC_tran	PF00005	1145 - 1293	2.3e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4334
AarI	CACCTGC	2 cut(s)	1336, 1670
Acc16I	TGCGCA	1 cut(s)	4107
Acc36I	ACCTGC	2 cut(s)	1336, 1670
AccB1I	GGYRCC	1 cut(s)	1682
AccB7I	CCANNNNNTGG	1 cut(s)	534
AccBSI	CCGCTC	1 cut(s)	3292
AccI	GTMKAC	3 cut(s)	881, 1189, 3199
AccII	CGCG	1 cut(s)	4213
AciI	CCGC	9 cut(s)	841, 1060, 1127, 1361, 1484, 1893, 3079, 3292, 3658
AcoI	YGGCCR	4 cut(s)	1128, 3365, 4180, 4452
AcuI	CTGAAG	2 cut(s)	456, 4417
AflIII	ACRYGT	2 cut(s)	2203, 2766
AgeI	ACCGGT	1 cut(s)	3634
AhlI	ACTAGT	1 cut(s)	3227
AjiI	CACGTC	1 cut(s)	2508
AjnI	CCWGG	8 cut(s)	216, 1154, 1495, 1846, 2524, 3415, 3711, 4122
AleI	CACNNNNGTG	2 cut(s)	3059, 3361
Alw21I	GWGCWC	6 cut(s)	38, 735, 1206, 2811, 2828, 2897
Alw26I	GTCTC	7 cut(s)	470, 1154, 2107, 3764, 4152, 4256, 4287
AlwNI	CAGNNNCTG	3 cut(s)	3458, 3653, 4226
Ama87I	CYCGRG	1 cut(s)	1923
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AsiGI	ACCGGT	1 cut(s)	3634
Asp700I	GAANNNNTTC	2 cut(s)	2457, 3752
AspLEI	GCGC	3 cut(s)	4067, 4108, 4215
AspS9I	GGNCC	6 cut(s)	525, 626, 838, 2841, 4018, 4094
AsuC2I	CCSGG	2 cut(s)	273, 2188
AsuHPI	GGTGA	9 cut(s)	680, 1328, 1883, 2744, 3046, 3139, 3624, 3797, 4162
AsuNHI	GCTAGC	1 cut(s)	3257
AvaI	CYCGRG	1 cut(s)	1923
AvaII	GGWCC	3 cut(s)	525, 626, 4018
BaeGI	GKGCMC	2 cut(s)	1622, 3724
BaeI	ACNNNNGTAYC	2 cut(s)	1999, 2032
BalI	TGGCCA	2 cut(s)	3367, 4182
BamHI	GGATCC	2 cut(s)	262, 1004
BanI	GGYRCC	1 cut(s)	1682
BanII	GRGCYC	1 cut(s)	1206
BarI	GAAGNNNNNNTAC	2 cut(s)	4081, 4113
BbsI	GAAGAC	2 cut(s)	2606, 4518
Bbv12I	GWGCWC	6 cut(s)	38, 735, 1206, 2811, 2828, 2897
BbvCI	CCTCAGC	1 cut(s)	3768
BceAI	ACGGC	3 cut(s)	371, 3269, 4439
BcgI	CGANNNNNNTGC	2 cut(s)	2263, 2297
BciT130I	CCWGG	8 cut(s)	218, 1156, 1497, 1848, 2526, 3417, 3713, 4124
BciVI	GTATCC	1 cut(s)	1435
BcnI	CCSGG	2 cut(s)	273, 2188
BcoDI	GTCTC	7 cut(s)	470, 1154, 2107, 3764, 4152, 4256, 4287
BcuI	ACTAGT	1 cut(s)	3227
BfmI	CTRYAG	3 cut(s)	172, 3876, 4340
BfuAI	ACCTGC	2 cut(s)	1336, 1670
BfuI	GTATCC	1 cut(s)	1435
BglII	AGATCT	4 cut(s)	179, 1855, 2324, 2933
BlpI	GCTNAGC	1 cut(s)	4167
BmcAI	AGTACT	1 cut(s)	4112
Bme18I	GGWCC	3 cut(s)	525, 626, 4018
BmeT110I	CYCGRG	1 cut(s)	1923
BmgBI	CACGTC	1 cut(s)	2508
BmgT120I	GGNCC	6 cut(s)	525, 626, 838, 2841, 4018, 4094
BmrI	ACTGGG	3 cut(s)	610, 867, 1262
BmtI	GCTAGC	1 cut(s)	3261
BmuI	ACTGGG	3 cut(s)	610, 867, 1262
BoxI	GACNNNNGTC	1 cut(s)	931
BpiI	GAAGAC	2 cut(s)	2606, 4518
BplI	GAGNNNNNCTC	2 cut(s)	1092, 1124
BpmI	CTGGAG	5 cut(s)	884, 1644, 2922, 3312, 4259
Bpu10I	CCTNAGC	1 cut(s)	3768
Bpu1102I	GCTNAGC	1 cut(s)	4167
BpuEI	CTTGAG	2 cut(s)	1192, 2064
BpuMI	CCSGG	2 cut(s)	273, 2188
BsaAI	YACGTR	3 cut(s)	97, 1754, 3923
BsaBI	GATNNNNATC	2 cut(s)	267, 2739
BsaI	GGTCTC	1 cut(s)	3764
BsaJI	CCNNGG	8 cut(s)	533, 562, 1131, 1155, 1496, 3711, 3777, 4406
BsaWI	WCCGGW	1 cut(s)	3634
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 2920, 2950
Bse118I	RCCGGY	1 cut(s)	3634
Bse3DI	GCAATG	4 cut(s)	610, 1674, 2752, 3833
Bse8I	GATNNNNATC	2 cut(s)	267, 2739
BseBI	CCWGG	8 cut(s)	218, 1156, 1497, 1848, 2526, 3417, 3713, 4124
BseDI	CCNNGG	8 cut(s)	533, 562, 1131, 1155, 1496, 3711, 3777, 4406
BseJI	GATNNNNATC	2 cut(s)	267, 2739
BseMI	GCAATG	4 cut(s)	610, 1674, 2752, 3833
BseRI	GAGGAG	2 cut(s)	1475, 4207
BseSI	GKGCMC	2 cut(s)	1622, 3724
BseYI	CCCAGC	1 cut(s)	4215
BsgI	GTGCAG	3 cut(s)	1773, 2640, 3419
Bsh1236I	CGCG	1 cut(s)	4213
BshNI	GGYRCC	1 cut(s)	1682
BshTI	ACCGGT	1 cut(s)	3634
BsiHKAI	GWGCWC	6 cut(s)	38, 735, 1206, 2811, 2828, 2897
BsiHKCI	CYCGRG	1 cut(s)	1923
BsiSI	CCGG	3 cut(s)	273, 2187, 3635
BslFI	GGGAC	3 cut(s)	236, 612, 1717
BsmAI	GTCTC	7 cut(s)	470, 1154, 2107, 3764, 4152, 4256, 4287
BsmBI	CGTCTC	2 cut(s)	4152, 4287
BsmFI	GGGAC	3 cut(s)	236, 612, 1717
BsmI	GAATGC	1 cut(s)	4067
Bso31I	GGTCTC	1 cut(s)	3764
BsoBI	CYCGRG	1 cut(s)	1923
Bsp1286I	GDGCHC	8 cut(s)	38, 735, 1206, 1622, 2811, 2828, 2897, 3724
Bsp1720I	GCTNAGC	1 cut(s)	4167
Bsp19I	CCATGG	2 cut(s)	533, 1131
BspACI	CCGC	9 cut(s)	841, 1060, 1127, 1361, 1484, 1893, 3079, 3292, 3658
BspFNI	CGCG	1 cut(s)	4213
BspHI	TCATGA	5 cut(s)	1023, 1110, 1828, 3117, 4311
BspMAI	CTGCAG	1 cut(s)	3880
BspMI	ACCTGC	2 cut(s)	1336, 1670
BspOI	GCTAGC	1 cut(s)	3261
BspQI	GCTCTTC	1 cut(s)	3154
BspT107I	GGYRCC	1 cut(s)	1682
BspTNI	GGTCTC	1 cut(s)	3764
BsrBI	CCGCTC	1 cut(s)	3292
BsrDI	GCAATG	4 cut(s)	610, 1674, 2752, 3833
BsrFI	RCCGGY	1 cut(s)	3634
BssAI	RCCGGY	1 cut(s)	3634
BssECI	CCNNGG	8 cut(s)	533, 562, 1131, 1155, 1496, 3711, 3777, 4406
BssNAI	GTATAC	1 cut(s)	1190
BssT1I	CCWWGG	4 cut(s)	533, 562, 1131, 4406
Bst1107I	GTATAC	1 cut(s)	1190
Bst2UI	CCWGG	8 cut(s)	218, 1156, 1497, 1848, 2526, 3417, 3713, 4124
Bst6I	CTCTTC	6 cut(s)	248, 972, 2019, 3154, 4053, 4213
BstAPI	GCANNNNNTGC	3 cut(s)	658, 3140, 4226
BstBAI	YACGTR	3 cut(s)	97, 1754, 3923
BstC8I	GCNNGC	9 cut(s)	731, 2224, 2397, 3083, 3259, 3499, 4139, 4466, 4470
BstDSI	CCRYGG	2 cut(s)	533, 1131
BstFNI	CGCG	1 cut(s)	4213
BstHHI	GCGC	3 cut(s)	4067, 4108, 4215
BstMAI	GTCTC	7 cut(s)	470, 1154, 2107, 3764, 4152, 4256, 4287
BstNI	CCWGG	8 cut(s)	218, 1156, 1497, 1848, 2526, 3417, 3713, 4124
BstNSI	RCATGY	6 cut(s)	362, 1387, 2207, 2399, 2654, 2770
BstPAI	GACNNNNGTC	1 cut(s)	931
BstSFI	CTRYAG	3 cut(s)	172, 3876, 4340
BstSLI	GKGCMC	2 cut(s)	1622, 3724
BstSNI	TACGTA	1 cut(s)	97
BstUI	CGCG	1 cut(s)	4213
BstV2I	GAAGAC	2 cut(s)	2606, 4518
BstX2I	RGATCY	9 cut(s)	179, 262, 1004, 1772, 1855, 2140, 2324, 2725, 2933
BstXI	CCANNNNNNTGG	1 cut(s)	3363
BstYI	RGATCY	9 cut(s)	179, 262, 1004, 1772, 1855, 2140, 2324, 2725, 2933
BstZ17I	GTATAC	1 cut(s)	1190
BsuI	GTATCC	1 cut(s)	1435
BtgI	CCRYGG	2 cut(s)	533, 1131
BtgZI	GCGATG	1 cut(s)	978
BtrI	CACGTC	1 cut(s)	2508
BveI	ACCTGC	2 cut(s)	1336, 1670
Cac8I	GCNNGC	9 cut(s)	731, 2224, 2397, 3083, 3259, 3499, 4139, 4466, 4470
CaiI	CAGNNNCTG	3 cut(s)	3458, 3653, 4226
CciI	TCATGA	5 cut(s)	1023, 1110, 1828, 3117, 4311
CfoI	GCGC	3 cut(s)	4067, 4108, 4215
Cfr10I	RCCGGY	1 cut(s)	3634
Cfr13I	GGNCC	6 cut(s)	525, 626, 838, 2841, 4018, 4094
CspAI	ACCGGT	1 cut(s)	3634
DraI	TTTAAA	2 cut(s)	1380, 3279
EaeI	YGGCCR	4 cut(s)	1128, 3365, 4180, 4452
Eam1104I	CTCTTC	6 cut(s)	248, 972, 2019, 3154, 4053, 4213
EarI	CTCTTC	6 cut(s)	248, 972, 2019, 3154, 4053, 4213
Ecl136II	GAGCTC	1 cut(s)	1204
Eco105I	TACGTA	1 cut(s)	97
Eco130I	CCWWGG	4 cut(s)	533, 562, 1131, 4406
Eco147I	AGGCCT	2 cut(s)	2409, 3415
Eco24I	GRGCYC	1 cut(s)	1206
Eco31I	GGTCTC	1 cut(s)	3764
Eco47I	GGWCC	3 cut(s)	525, 626, 4018
Eco53kI	GAGCTC	1 cut(s)	1204
Eco57I	CTGAAG	2 cut(s)	456, 4417
Eco88I	CYCGRG	1 cut(s)	1923
EcoICRI	GAGCTC	1 cut(s)	1204
EcoO109I	RGGNCCY	3 cut(s)	626, 4018, 4094
EcoRI	GAATTC	6 cut(s)	83, 231, 1467, 3748, 3929, 3993
EcoRII	CCWGG	8 cut(s)	216, 1154, 1495, 1846, 2524, 3415, 3711, 4122
EcoT14I	CCWWGG	4 cut(s)	533, 562, 1131, 4406
EcoT22I	ATGCAT	1 cut(s)	2401
EcoT38I	GRGCYC	1 cut(s)	1206
ErhI	CCWWGG	4 cut(s)	533, 562, 1131, 4406
Esp3I	CGTCTC	2 cut(s)	4152, 4287
FalI	AAGNNNNNCTT	2 cut(s)	2117, 2149
FaqI	GGGAC	3 cut(s)	236, 612, 1717
FauI	CCCGC	2 cut(s)	1491, 3285
FblI	GTMKAC	3 cut(s)	881, 1189, 3199
FriOI	GRGCYC	1 cut(s)	1206
FspI	TGCGCA	1 cut(s)	4107
GlaI	GCGC	3 cut(s)	4066, 4107, 4214
GsaI	CCCAGC	1 cut(s)	4219
GsuI	CTGGAG	5 cut(s)	884, 1644, 2922, 3312, 4259
HapII	CCGG	3 cut(s)	273, 2187, 3635
HhaI	GCGC	3 cut(s)	4067, 4108, 4215
Hin6I	GCGC	3 cut(s)	4065, 4106, 4213
HinP1I	GCGC	3 cut(s)	4065, 4106, 4213
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	2997
HpaII	CCGG	3 cut(s)	273, 2187, 3635
HphI	GGTGA	9 cut(s)	680, 1328, 1883, 2744, 3046, 3139, 3624, 3797, 4162
Hpy166II	GTNNAC	6 cut(s)	882, 1190, 1341, 1951, 3200, 3450
Hpy8I	GTNNAC	6 cut(s)	882, 1190, 1341, 1951, 3200, 3450
HpyCH4IV	ACGT	6 cut(s)	96, 117, 1422, 1753, 2507, 3922
HpySE526I	ACGT	6 cut(s)	96, 117, 1422, 1753, 2507, 3922
HspAI	GCGC	3 cut(s)	4065, 4106, 4213
KflI	GGGWCCC	1 cut(s)	626
LguI	GCTCTTC	1 cut(s)	3154
LmnI	GCTCC	5 cut(s)	943, 1663, 2671, 2796, 3331
MaeII	ACGT	6 cut(s)	96, 117, 1422, 1753, 2507, 3922
MaeIII	GTNAC	8 cut(s)	160, 686, 1276, 1282, 1813, 2053, 2569, 2575
MbiI	CCGCTC	1 cut(s)	3292
MfeI	CAATTG	1 cut(s)	2694
MflI	RGATCY	9 cut(s)	179, 262, 1004, 1772, 1855, 2140, 2324, 2725, 2933
MhlI	GDGCHC	8 cut(s)	38, 735, 1206, 1622, 2811, 2828, 2897, 3724
MlsI	TGGCCA	2 cut(s)	3367, 4182
MluNI	TGGCCA	2 cut(s)	3367, 4182
MlyI	GAGTC	6 cut(s)	117, 305, 391, 958, 2572, 4476
MmeI	TCCRAC	8 cut(s)	435, 878, 1573, 2351, 3078, 3277, 3463, 3781
Mox20I	TGGCCA	2 cut(s)	3367, 4182
Mph1103I	ATGCAT	1 cut(s)	2401
MroXI	GAANNNNTTC	2 cut(s)	2457, 3752
MscI	TGGCCA	2 cut(s)	3367, 4182
MslI	CAYNNNNRTG	4 cut(s)	716, 3059, 3361, 3690
Msp20I	TGGCCA	2 cut(s)	3367, 4182
MspA1I	CMGCKG	4 cut(s)	3081, 3332, 3881, 4223
MspI	CCGG	3 cut(s)	273, 2187, 3635
MunI	CAATTG	1 cut(s)	2694
Mva1269I	GAATGC	1 cut(s)	4067
MvaI	CCWGG	8 cut(s)	218, 1156, 1497, 1848, 2526, 3417, 3713, 4124
MvnI	CGCG	1 cut(s)	4213
NciI	CCSGG	2 cut(s)	273, 2188
NcoI	CCATGG	2 cut(s)	533, 1131
NheI	GCTAGC	1 cut(s)	3257
NmuCI	GTSAC	5 cut(s)	160, 1276, 1813, 2053, 2575
NsbI	TGCGCA	1 cut(s)	4107
NsiI	ATGCAT	1 cut(s)	2401
NspI	RCATGY	6 cut(s)	362, 1387, 2207, 2399, 2654, 2770
OliI	CACNNNNGTG	2 cut(s)	3059, 3361
PaeI	GCATGC	1 cut(s)	2399
PaeR7I	CTCGAG	1 cut(s)	1923
PagI	TCATGA	5 cut(s)	1023, 1110, 1828, 3117, 4311
PaqCI	CACCTGC	2 cut(s)	1336, 1670
PceI	AGGCCT	2 cut(s)	2409, 3415
PciI	ACATGT	2 cut(s)	2203, 2766
PciSI	GCTCTTC	1 cut(s)	3154
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PctI	GAATGC	1 cut(s)	4067
PdmI	GAANNNNTTC	2 cut(s)	2457, 3752
PfeI	GAWTC	9 cut(s)	167, 515, 740, 1541, 2059, 2529, 2921, 3051, 3853
PflMI	CCANNNNNTGG	1 cut(s)	534
PinAI	ACCGGT	1 cut(s)	3634
PleI	GAGTC	6 cut(s)	116, 304, 391, 958, 2572, 4476
PpsI	GAGTC	6 cut(s)	116, 304, 391, 958, 2572, 4476
Ppu21I	YACGTR	3 cut(s)	97, 1754, 3923
PpuMI	RGGWCCY	2 cut(s)	626, 4018
PscI	ACATGT	2 cut(s)	2203, 2766
PshAI	GACNNNNGTC	1 cut(s)	931
PsiI	TTATAA	1 cut(s)	4334
Psp124BI	GAGCTC	1 cut(s)	1206
Psp5II	RGGWCCY	2 cut(s)	626, 4018
Psp6I	CCWGG	8 cut(s)	216, 1154, 1495, 1846, 2524, 3415, 3711, 4122
PspFI	CCCAGC	1 cut(s)	4215
PspGI	CCWGG	8 cut(s)	216, 1154, 1495, 1846, 2524, 3415, 3711, 4122
PspPI	GGNCC	6 cut(s)	525, 626, 838, 2841, 4018, 4094
PspPPI	RGGWCCY	2 cut(s)	626, 4018
PspXI	VCTCGAGB	1 cut(s)	1923
PstI	CTGCAG	1 cut(s)	3880
PstNI	CAGNNNCTG	3 cut(s)	3458, 3653, 4226
PsuI	RGATCY	9 cut(s)	179, 262, 1004, 1772, 1855, 2140, 2324, 2725, 2933
PvuII	CAGCTG	3 cut(s)	3332, 3881, 4223
RseI	CAYNNNNRTG	4 cut(s)	716, 3059, 3361, 3690
SacI	GAGCTC	1 cut(s)	1206
SalI	GTCGAC	1 cut(s)	880
SapI	GCTCTTC	1 cut(s)	3154
Sau96I	GGNCC	6 cut(s)	525, 626, 838, 2841, 4018, 4094
ScaI	AGTACT	1 cut(s)	4112
SchI	GAGTC	6 cut(s)	117, 305, 391, 958, 2572, 4476
SduI	GDGCHC	8 cut(s)	38, 735, 1206, 1622, 2811, 2828, 2897, 3724
SfcI	CTRYAG	3 cut(s)	172, 3876, 4340
Sfr274I	CTCGAG	1 cut(s)	1923
SinI	GGWCC	3 cut(s)	525, 626, 4018
SlaI	CTCGAG	1 cut(s)	1923
SmiMI	CAYNNNNRTG	4 cut(s)	716, 3059, 3361, 3690
SmlI	CTYRAG	3 cut(s)	1207, 1923, 2079
SmoI	CTYRAG	3 cut(s)	1207, 1923, 2079
SnaBI	TACGTA	1 cut(s)	97
SpeI	ACTAGT	1 cut(s)	3227
SphI	GCATGC	1 cut(s)	2399
SseBI	AGGCCT	2 cut(s)	2409, 3415
SsiI	CCGC	9 cut(s)	841, 1060, 1127, 1361, 1484, 1893, 3079, 3292, 3658
SspI	AATATT	2 cut(s)	1888, 3067
SstI	GAGCTC	1 cut(s)	1206
StuI	AGGCCT	2 cut(s)	2409, 3415
StyI	CCWWGG	4 cut(s)	533, 562, 1131, 4406
TaiI	ACGT	6 cut(s)	99, 120, 1425, 1756, 2510, 3925
TaqI	TCGA	8 cut(s)	881, 1852, 1924, 2461, 3762, 3981, 3991, 4023
TaqII	GACCGA	2 cut(s)	488, 3746
TatI	WGTACW	5 cut(s)	2329, 3175, 3430, 4088, 4110
TauI	GCSGC	2 cut(s)	843, 1130
TfiI	GAWTC	9 cut(s)	167, 515, 740, 1541, 2059, 2529, 2921, 3051, 3853
TseFI	GTSAC	5 cut(s)	160, 1276, 1813, 2053, 2575
Tsp45I	GTSAC	5 cut(s)	160, 1276, 1813, 2053, 2575
TspGWI	ACGGA	8 cut(s)	800, 935, 939, 1205, 1207, 3395, 3453, 3856
Van91I	CCANNNNNTGG	1 cut(s)	534
VpaK11BI	GGWCC	3 cut(s)	525, 626, 4018
XceI	RCATGY	6 cut(s)	362, 1387, 2207, 2399, 2654, 2770
XcmI	CCANNNNNNNNNTGG	3 cut(s)	224, 1486, 4413
XhoI	CTCGAG	1 cut(s)	1923
XmiI	GTMKAC	3 cut(s)	881, 1189, 3199
XmnI	GAANNNNTTC	2 cut(s)	2457, 3752
ZrmI	AGTACT	1 cut(s)	4112
Zsp2I	ATGCAT	1 cut(s)	2401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.