Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Reverse (-)

83175410 .. 83178098

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTCTTCTTTACCAACAATTAGGTGTTGCATCGCTTATTGGATCCATGATGCTAGTTCTCACGATCCCTATTCAGACAACGGTGATCAGCAAAATGCAGAAACTGACAAAGGATGGGCTGCAACAGACTGACAAGAGAGTTGGCCTCATGAATGAAATTTTAGCTGCCATGGACACTGTGAAATGTTATGCCTGGGAGAAAAGTTTCCAGCAGCGAGTACAAATTATACGGAATGATGAGCTTTCAAGGTTCCGTAAAGCGCAATTACTAACTGCTTTTAACAGTTCTATTCTCAATAGCATCCCAGTTGTTGTGACAGTAACTTCATTTGGGGCATTCACTTTTCTTGGAGGCGAATTGACACCTGCAAGGGCATTCACATCTCTGGGGAACTTTTGTATATATAATCAAATATTGGTTATTTGTTTCAGGTCTGGCCGTGATGGGCAGGCTGTCTCAGAACAGACTTCATCCGCTAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

162

Amino Acids

17.94

Weight (kDa)

9.55

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	10 - 132	2e-20	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	39, 52, 61
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	3 cut(s)	167, 244, 486
AluI	AGCT	3 cut(s)	167, 244, 486
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	3 cut(s)	39, 52, 61
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	2 cut(s)	145, 439
ApeKI	GCWGC	3 cut(s)	121, 167, 214
ApoI	RAATTY	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	108, 154, 226
BccI	CCATC	2 cut(s)	110, 440
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	196
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	2 cut(s)	56, 480
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	3 cut(s)	122, 168, 215
BlsI	GCNGC	3 cut(s)	123, 169, 216
Bme1390I	CCNGG	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	46, 254
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	3 cut(s)	41, 42, 312
BmuI	ACTGGG	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BsaJI	CCNNGG	2 cut(s)	171, 195
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	171, 195
BseGI	GGATG	3 cut(s)	121, 303, 473
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	108, 154, 226
BshFI	GGCC	2 cut(s)	147, 441
BsmAI	GTCTC	1 cut(s)	463
BsmI	GAATGC	2 cut(s)	338, 377
BsnI	GGCC	2 cut(s)	147, 441
Bsp143I	GATC	3 cut(s)	44, 66, 87
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	147, 441
BspCNI	CTCAG	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	46, 254
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	3 cut(s)	39, 52, 61
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	171, 195
BssMI	GATC	3 cut(s)	44, 66, 87
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	4 cut(s)	85, 181, 287, 322
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	460
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	121, 303, 473
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	3 cut(s)	47, 69, 90
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	3 cut(s)	44, 66, 87
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	108, 154, 226
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	147, 441
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	121, 303, 473
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	49, 151, 172
CviJI	RGCY	7 cut(s)	121, 147, 167, 244, 441, 455, 486
CviKI_1	RGCY	7 cut(s)	121, 147, 167, 244, 441, 455, 486
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	3 cut(s)	46, 68, 89
DpnII	GATC	3 cut(s)	44, 66, 87
EaeI	YGGCCR	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	52, 154, 175
FaiI	YATR	8 cut(s)	50, 152, 173, 192, 230, 404, 406, 408
FatI	CATG	3 cut(s)	48, 150, 171
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	122, 168, 215
FokI	GGATG	3 cut(s)	128, 290, 460
Fsp4HI	GCNGC	3 cut(s)	122, 168, 215
FspBI	CTAG	2 cut(s)	56, 480
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	122, 168, 215
HaeIII	GGCC	2 cut(s)	147, 441
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	52, 154, 175
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	78, 463
Hpy188III	TCNNGA	2 cut(s)	64, 151
HpyCH4III	ACNGT	4 cut(s)	85, 181, 287, 322
HpyCH4V	TGCA	4 cut(s)	32, 100, 124, 371
HpyF3I	CTNAG	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	52, 154, 175
HspAI	GCGC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	44, 66, 87
LpnPI	CCDG	9 cut(s)	181, 208, 224, 321, 374, 381, 418, 423, 437
Lsp1109I	GCAGC	3 cut(s)	108, 154, 226
LweI	GCATC	3 cut(s)	41, 42, 312
MaeI	CTAG	2 cut(s)	56, 480
MaeIII	GTNAC	2 cut(s)	316, 322
MalI	GATC	3 cut(s)	46, 68, 89
MboI	GATC	3 cut(s)	44, 66, 87
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	5 cut(s)	20, 159, 225, 266, 359
MnlI	CCTC	2 cut(s)	158, 347
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	196
Mva1269I	GAATGC	2 cut(s)	338, 377
MvaI	CCWGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	44, 66, 87
NlaIII	CATG	3 cut(s)	52, 154, 175
NlaIV	GGNNCC	2 cut(s)	46, 254
NmuCI	GTSAC	1 cut(s)	316
PagI	TCATGA	1 cut(s)	150
PaqCI	CACCTGC	1 cut(s)	376
PctI	GAATGC	2 cut(s)	338, 377
PdmI	GAANNNNTTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	123, 169, 216
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	46, 254
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	122, 168, 215
Sau3AI	GATC	3 cut(s)	44, 66, 87
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	7 cut(s)	28, 169, 246, 254, 370, 437, 488
SfaNI	GCATC	3 cut(s)	41, 42, 312
Sse9I	AATT	5 cut(s)	20, 159, 225, 266, 359
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	2 cut(s)	56, 480
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	4 cut(s)	85, 181, 287, 322
TasI	AATT	5 cut(s)	20, 159, 225, 266, 359
TatI	WGTACW	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	121, 167, 214
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	167, 171, 318, 462
TspGWI	ACGGA	2 cut(s)	245, 247
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	56, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.