Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Forward (+)

10736936 .. 10739818

Gene Structure 2883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATTTTAGATTCTTCTGGTGTTGCATCGCTTATTGGATCCTTGATGCTAGTTCTCACGATCCCTATTCAGACAACGGTGATCAGCAAAATGCGGAAACTGACAAAGGATGGGCTGCAACAGACTGACAAGAGAGTTGGCCTCATGAATGAAATTTTAGCTGCCATGGACACTTTGAAATGTTATGCCTGGGAGAAGAGTTTCCAGCAGCGAGTACAAATTATACGGAATGATAAGCTTTCAAGGTTCCGTAAAGCGCAATTACTAACTGCTTTTAACAGTTTTATTCTCAATAGCATCCCAGTTGTTGTGACAGTAACTTCATTTGGGGCATTCACTTTTCTTGGAGGCGAATTGACACCTGCAAGGGCATTTACATCACTTTCGCTTTTTGCAGTGCTACGCTTCCCTGTGAAGGTGCTGCCCAACTTATTGAGTCAGGTTGTAAATGCAAATGTATCCTTACAGCGTTTGGAGGAACTATTTTTAGCTGAGGAGAGAATTCTAGTACCCAACCCGCCTCTGGAACCAGGGCTTCCAGCCATCTCAACTCAGGATGGGTACTTTTCATGGGATAAAGGTGCAGAGAAGCCCACATTATCAAACATCAACTTAGATATACCAGTTGGCAGCTTAGTTGCAGTTGTTGGCGGCACTGGAGAAGGAAAGACATCTCTTATATCAGCCATGCTTGGGGAGCTGCCTGCCATTGCAGATGCAGGCGTTGTAATTAGGGGGACTGTTGCTTATGTTCCCCAAGTTTCATGGATTTTCAATGATACTGTACGTGAAAACATTTTATTTGGATCTGAATTTGAAGCTGCACGGTATTGGAAGGCTGTTGATGTAACTAAGTTCCGTCATGACCTAGACTTACTTCCAGTAAGTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

298

Amino Acids

32.57

Weight (kDa)

7.78

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	5 - 138	2.5e-21	ABC transporter transmembrane region
ABC_tran	PF00005	200 - 288	2e-07	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	370
AccB7I	CCANNNNNTGG	1 cut(s)	887
AciI	CCGC	3 cut(s)	94, 518, 651
AclWI	GGATC	4 cut(s)	33, 46, 55, 814
AcsI	RAATTY	3 cut(s)	153, 501, 812
AfaI	GTAC	4 cut(s)	216, 510, 563, 786
AfiI	CCNNNNNNNGG	4 cut(s)	415, 523, 693, 887
AgsI	TTSAA	4 cut(s)	178, 243, 775, 818
AjnI	CCWGG	2 cut(s)	188, 529
AluBI	AGCT	6 cut(s)	161, 238, 491, 633, 700, 821
AluI	AGCT	6 cut(s)	161, 238, 491, 633, 700, 821
AlwI	GGATC	4 cut(s)	33, 46, 55, 814
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	7 cut(s)	115, 161, 208, 421, 630, 700, 821
ApoI	RAATTY	3 cut(s)	153, 501, 812
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	7 cut(s)	102, 148, 220, 408, 642, 687, 808
BccI	CCATC	3 cut(s)	104, 551, 551
BciT130I	CCWGG	2 cut(s)	190, 531
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	81
BfaI	CTAG	3 cut(s)	50, 506, 869
BfuAI	ACCTGC	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	8 cut(s)	116, 162, 209, 422, 631, 652, 701, 822
BlsI	GCNGC	8 cut(s)	117, 163, 210, 423, 632, 653, 702, 823
Bme1390I	CCNGG	2 cut(s)	190, 531
BmiI	GGNNCC	3 cut(s)	40, 248, 528
BmrFI	CCNGG	2 cut(s)	190, 531
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	4 cut(s)	35, 36, 306, 706
BmuI	ACTGGG	1 cut(s)	296
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	788
BsaJI	CCNNGG	3 cut(s)	165, 189, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 523, 693, 887
Bse1I	ACTGG	4 cut(s)	302, 623, 661, 881
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	190, 531
BseDI	CCNNGG	3 cut(s)	165, 189, 530
BseGI	GGATG	3 cut(s)	115, 297, 562
BseLI	CCNNNNNNNGG	4 cut(s)	415, 523, 693, 887
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	483, 566
BseNI	ACTGG	4 cut(s)	302, 623, 661, 881
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	7 cut(s)	102, 148, 220, 408, 642, 687, 808
BsgI	GTGCAG	2 cut(s)	603, 807
BshFI	GGCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	4 cut(s)	415, 523, 693, 887
BsmFI	GGGAC	1 cut(s)	751
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	38, 60, 81, 806
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	94, 518, 651
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	484, 565
BspHI	TCATGA	2 cut(s)	144, 862
BspLI	GGNNCC	3 cut(s)	40, 248, 528
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	4 cut(s)	33, 46, 55, 814
BsrDI	GCAATG	1 cut(s)	708
BsrI	ACTGG	4 cut(s)	302, 623, 661, 881
BssECI	CCNNGG	3 cut(s)	165, 189, 530
BssMI	GATC	4 cut(s)	38, 60, 81, 806
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	190, 531
Bst4CI	ACNGT	6 cut(s)	79, 281, 316, 742, 784, 828
Bst6I	CTCTTC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	705, 721
BstDEI	CTNAG	5 cut(s)	492, 552, 613, 634, 852
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	115, 297, 562
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	41, 63, 84, 809
BstMBI	GATC	4 cut(s)	38, 60, 81, 806
BstMWI	GCNNNNNNNGC	1 cut(s)	697
BstNI	CCWGG	2 cut(s)	190, 531
BstSCI	CCNGG	2 cut(s)	188, 529
BstV1I	GCAGC	7 cut(s)	102, 148, 220, 408, 642, 687, 808
BstX2I	RGATCY	2 cut(s)	38, 806
BstYI	RGATCY	2 cut(s)	38, 806
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	115, 297, 562
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	402, 654
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	705, 721
CciI	TCATGA	2 cut(s)	144, 862
CfoI	GCGC	1 cut(s)	259
Csp6I	GTAC	4 cut(s)	215, 509, 562, 785
CviAII	CATG	6 cut(s)	145, 166, 570, 688, 765, 863
CviQI	GTAC	4 cut(s)	215, 509, 562, 785
DdeI	CTNAG	5 cut(s)	492, 552, 613, 634, 852
DpnI	GATC	4 cut(s)	40, 62, 83, 808
DpnII	GATC	4 cut(s)	38, 60, 81, 806
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	188, 529
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	6 cut(s)	148, 169, 573, 691, 768, 866
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	6 cut(s)	144, 165, 569, 687, 764, 862
FauI	CCCGC	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	8 cut(s)	116, 162, 209, 422, 631, 652, 701, 822
FokI	GGATG	3 cut(s)	122, 284, 569
Fsp4HI	GCNGC	8 cut(s)	116, 162, 209, 422, 631, 652, 701, 822
FspBI	CTAG	3 cut(s)	50, 506, 869
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	8 cut(s)	116, 162, 209, 422, 631, 652, 701, 822
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	6 cut(s)	148, 169, 573, 691, 768, 866
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	11, 436
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	72, 811
Hpy188III	TCNNGA	5 cut(s)	58, 145, 524, 554, 863
HpyAV	CCTTC	3 cut(s)	409, 656, 829
HpyCH4III	ACNGT	6 cut(s)	79, 281, 316, 742, 784, 828
HpyCH4IV	ACGT	1 cut(s)	787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	697
HpyF3I	CTNAG	5 cut(s)	492, 552, 613, 634, 852
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	6 cut(s)	148, 169, 573, 691, 768, 866
HspAI	GCGC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	38, 60, 81, 806
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	7 cut(s)	102, 148, 220, 408, 642, 687, 808
LweI	GCATC	4 cut(s)	35, 36, 306, 706
MaeI	CTAG	3 cut(s)	50, 506, 869
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	3 cut(s)	310, 316, 847
MalI	GATC	4 cut(s)	40, 62, 83, 808
MboI	GATC	4 cut(s)	38, 60, 81, 806
MboII	GAAGA	2 cut(s)	6, 208
MflI	RGATCY	2 cut(s)	38, 806
MluCI	AATT	7 cut(s)	153, 219, 260, 353, 501, 729, 812
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	5 cut(s)	152, 341, 469, 487, 531
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	190, 531
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	2 cut(s)	190, 531
MwoI	GCNNNNNNNGC	1 cut(s)	697
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	38, 60, 81, 806
NlaIII	CATG	6 cut(s)	148, 169, 573, 691, 768, 866
NlaIV	GGNNCC	3 cut(s)	40, 248, 528
NmuCI	GTSAC	1 cut(s)	310
PagI	TCATGA	2 cut(s)	144, 862
PaqCI	CACCTGC	1 cut(s)	370
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	887
PkrI	GCNGC	8 cut(s)	117, 163, 210, 423, 632, 653, 702, 823
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
Ppu21I	YACGTR	1 cut(s)	788
Psp6I	CCWGG	2 cut(s)	188, 529
PspGI	CCWGG	2 cut(s)	188, 529
PspN4I	GGNNCC	3 cut(s)	40, 248, 528
PsuI	RGATCY	2 cut(s)	38, 806
RsaI	GTAC	4 cut(s)	216, 510, 563, 786
RsaNI	GTAC	4 cut(s)	215, 509, 562, 785
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	8 cut(s)	116, 162, 209, 422, 631, 652, 701, 822
Sau3AI	GATC	4 cut(s)	38, 60, 81, 806
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	190, 531
SfaNI	GCATC	4 cut(s)	35, 36, 306, 706
Sse9I	AATT	7 cut(s)	153, 219, 260, 353, 501, 729, 812
SsiI	CCGC	3 cut(s)	94, 518, 651
SspMI	CTAG	3 cut(s)	50, 506, 869
StyD4I	CCNGG	2 cut(s)	188, 529
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	6 cut(s)	79, 281, 316, 742, 784, 828
TaiI	ACGT	1 cut(s)	790
TasI	AATT	7 cut(s)	153, 219, 260, 353, 501, 729, 812
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	402, 661
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	7 cut(s)	115, 161, 208, 421, 630, 700, 821
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	161, 165, 312, 558, 753
TspGWI	ACGGA	3 cut(s)	239, 241, 848
TspRI	CASTG	2 cut(s)	402, 661
Van91I	CCANNNNNTGG	1 cut(s)	887
XapI	RAATTY	3 cut(s)	153, 501, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	3 cut(s)	50, 506, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.