Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Reverse (-)

23665953 .. 23666728

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTCCATTACGCCTACGGCGCCGTCAAGAAGTCGATCGAGGCCTACGTCACTCGCGCCGGCGGGCACGTTATTGAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAAGCTTTGGAGAAGGGGAAGGCTAATGGTAGGAGGGTTAGGTTAGCTGTGATTGATCATATTACTTCAATGCCGTGTGTGGTTATACCTGTTAAGGAGTTGGTTAGGATTTGTAGGGAGGAGGGGATTGATCAGGTTTTCGTCGATGCGGCTCACAGCATTGGGTGCACTGAGGTTGATATGAAGGAGATTGGGGCTGATTATTATACTAGTAATTTGCACAAGTGGTTCTTTTACCCGCCGTCGATTGCGTTTTTGTATTGTAGGAAGTCGCCCAAGGGTGTGGAATTGCACCACCCGGTGGTTTCGCATGAGTATGGGAATGGATTGGCTATTGAAAGTGCTTGGATTGGGACTAGGGATTACAACCCTCAGTTGGTTGTTCCGGCGGTTTTGGACTTTGTTAATAGGTTTGAAGGCGGAATTGAGGGGATCAGGAAGAGAAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

194

Amino Acids

21.81

Weight (kDa)

7.12

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	55 - 136	5.6e-10	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	2 cut(s)	20, 79
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccII	CGCG	1 cut(s)	57
AciI	CCGC	5 cut(s)	63, 281, 371, 521, 552
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	21
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	433, 508
AgsI	TTSAA	4 cut(s)	100, 201, 470, 548
AhlI	ACTAGT	1 cut(s)	341
AluBI	AGCT	2 cut(s)	137, 179
AluI	AGCT	2 cut(s)	137, 179
Alw21I	GWGCWC	1 cut(s)	302
Alw44I	GTGCAC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	100
Asp718I	GGTACC	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	23, 59
AsuC2I	CCSGG	1 cut(s)	431
BaeGI	GKGCMC	2 cut(s)	69, 302
BanI	GGYRCC	2 cut(s)	20, 79
Bbv12I	GWGCWC	1 cut(s)	302
BceAI	ACGGC	5 cut(s)	8, 34, 73, 190, 358
BclI	TGATCA	2 cut(s)	187, 262
BcnI	CCSGG	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	2 cut(s)	342, 489
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	22, 81
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 508
Bse118I	RCCGGY	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	433, 508
BseMII	CTCAG	2 cut(s)	294, 518
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	2 cut(s)	69, 302
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	2 cut(s)	20, 79
BsiEI	CGRYCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	60, 431, 518
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	433, 508
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	69, 302
Bsp143I	GATC	4 cut(s)	36, 187, 262, 564
BspACI	CCGC	5 cut(s)	63, 281, 371, 521, 552
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	295, 517
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	22, 81
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	2 cut(s)	20, 79
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	36, 187, 262, 564
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	61, 65
BstDEI	CTNAG	2 cut(s)	303, 504
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 59
BstKTI	GATC	4 cut(s)	39, 190, 265, 567
BstMBI	GATC	4 cut(s)	36, 187, 262, 564
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 297
BstSCI	CCNGG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	69, 302
BstUI	CGCG	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	61, 65
CfoI	GCGC	2 cut(s)	23, 59
Cfr10I	RCCGGY	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	7 cut(s)	44, 137, 155, 179, 284, 329, 464
CviKI_1	RGCY	7 cut(s)	44, 137, 155, 179, 284, 329, 464
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	303, 504
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	4 cut(s)	38, 189, 264, 566
DpnII	GATC	4 cut(s)	36, 187, 262, 564
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	446
FaiI	YATR	6 cut(s)	192, 218, 314, 339, 444, 450
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	1 cut(s)	442
FauI	CCCGC	2 cut(s)	56, 378
FbaI	TGATCA	2 cut(s)	187, 262
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	342, 489
GlaI	GCGC	2 cut(s)	22, 58
GluI	GCNGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	60, 431, 518
HhaI	GCGC	2 cut(s)	23, 59
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	2 cut(s)	21, 57
HinP1I	GCGC	2 cut(s)	21, 57
HindIII	AAGCTT	1 cut(s)	135
HpaII	CCGG	3 cut(s)	60, 431, 518
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	28, 568
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	278, 379
HpyAV	CCTTC	4 cut(s)	139, 145, 310, 542
HpyCH4IV	ACGT	2 cut(s)	48, 69
HpyCH4V	TGCA	3 cut(s)	300, 352, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 297
HpyF3I	CTNAG	2 cut(s)	303, 504
HpySE526I	ACGT	2 cut(s)	48, 69
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	2 cut(s)	21, 57
KasI	GGCGCC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	187, 262
Kzo9I	GATC	4 cut(s)	36, 187, 262, 564
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	73, 234, 251, 444, 531, 553
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	342, 489
MaeII	ACGT	2 cut(s)	48, 69
MaeIII	GTNAC	2 cut(s)	49, 118
MalI	GATC	4 cut(s)	38, 189, 264, 566
MboI	GATC	4 cut(s)	36, 187, 262, 564
MboII	GAAGA	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	69, 302
MluCI	AATT	4 cut(s)	100, 346, 419, 555
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	34, 70, 159, 244, 247, 298, 513, 553
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	3 cut(s)	129, 225, 537
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	3 cut(s)	60, 431, 518
MspR9I	CCNGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	20, 297
NaeI	GCCGGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	4 cut(s)	36, 187, 262, 564
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	2 cut(s)	22, 81
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	283
Ple19I	CGATCG	1 cut(s)	39
PluTI	GGCGCC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	22, 81
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	129, 225, 537
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	36, 187, 262, 564
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	69, 302
SfaNI	GCATC	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	447
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	4 cut(s)	100, 346, 419, 555
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	5 cut(s)	63, 281, 371, 521, 552
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	342, 489
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	408
TaiI	ACGT	2 cut(s)	51, 72
TaqI	TCGA	4 cut(s)	35, 39, 276, 377
TasI	AATT	4 cut(s)	100, 346, 419, 555
TauI	GCSGC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	129, 225, 537
Tru9I	TTAA	3 cut(s)	129, 225, 537
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	100
XspI	CTAG	2 cut(s)	342, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.