Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Forward (+)

12261833 .. 12275262

Gene Structure 13430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCCGGTGATTGCTGAAGATGCTTGTCGGTTTAGGGCAAAGCGGCAAACTTTGGGCTTTTCGTCTCAACCAAACCTGGATACTATAATCAGCAAAGGATTAAGTTTGGTGTACGTTATTCCTGGGAGACAAGTTTCCAGAAGCAAGTTCAAAATATACGAAATTATGAGCTTTCAATGCAAGTTGAACAGTTTTATTCTCAACAGCAACTTCATTTGGGGCGTTCACTTTCCTTGGAGGCGAATTGACCCCTGCAAGGGCATTTACATCACTTTATCTTTTTGCAGCGCTACGCTTCCCTTTAGAAATGCTGCCCAACTTATTAAGTCAGGTAGCATGAGCTTCTTATCTGTTGTAAATGCAAATGTATCCTTACAGCGTTTGGAGAAACTATTTTTAACTGACGAAAGAATTCTAGTACCCAACCCTCCTCTGGAACCAGGGCTTCCAGCAATCTCAATTCAGGATGGATACTTTTCATGGGATTCAAAGGCAGAGAAGCCCACATTATCAAACATTAACTTAGATATCCCACTTGGTAGCTTAGTTGCAGTTGTTGGCGGCACTGGAGAAGGAAAGACATTACTTATATCAGCCATGCTTAGGGAGCTGCCTCCCATCGCAGATGCAGGTGTACGTGAAAACATTTTATTTGGATCTGAATTTGAAGCTGCACGGTATTGCAAAGCTATTGATGTAACTGAGTTCCATCATGACCTAGACTTACTTCCAGGGAAAACTAGGGTGCTTGTCACAAATCAGCTGCATTTTCTGCCTCAAGTGGACGAAGTTATTTTAGTCTCTGACGGTACGATTAAAGAGAAGGGAACCTTTAAGGATCTCTATGAAAGCAGTTTGCTGTTCCAAAAGCTAATGGAAAATGCCGGAAAAATGGAAGTACGTGTAGAAGAAAAGGAAGACAGCAAAACTGATTACCTGGAAAGCTCACTTCCTGTGTCTAATGGGGTGGTGAATGACTTGCCAGAAGATGCAAGCTACACAAAGAAACGGCAAGGGATGAGATCTGTACTCATTAAACAAGAGGAATGGGAAACAGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

354

Amino Acids

39.62

Weight (kDa)

5.94

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	620
AciI	CCGC	2 cut(s)	43, 561
AclWI	GGATC	2 cut(s)	664, 846
AcsI	RAATTY	2 cut(s)	411, 662
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	6 cut(s)	113, 420, 636, 811, 900, 1029
AfeI	AGCGCT	1 cut(s)	289
AfiI	CCNNNNNNNGG	4 cut(s)	256, 257, 433, 603
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	5 cut(s)	151, 176, 187, 489, 668
AjnI	CCWGG	5 cut(s)	75, 121, 439, 730, 936
Alw26I	GTCTC	3 cut(s)	69, 121, 805
AlwI	GGATC	2 cut(s)	664, 846
Aor51HI	AGCGCT	1 cut(s)	289
ApeKI	GCWGC	5 cut(s)	285, 311, 610, 671, 763
ApoI	RAATTY	2 cut(s)	411, 662
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	19, 982
BbsI	GAAGAC	1 cut(s)	924
BbvI	GCAGC	5 cut(s)	297, 298, 597, 658, 750
BccI	CCATC	3 cut(s)	461, 626, 717
BceAI	ACGGC	1 cut(s)	1025
BciT130I	CCWGG	5 cut(s)	77, 123, 441, 732, 938
BciVI	GTATCC	3 cut(s)	73, 379, 464
BcoDI	GTCTC	3 cut(s)	69, 121, 805
BfaI	CTAG	3 cut(s)	416, 719, 741
BfoI	RGCGCY	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	620
BfuI	GTATCC	3 cut(s)	73, 379, 464
BglII	AGATCT	1 cut(s)	1022
BisI	GCNGC	7 cut(s)	44, 286, 312, 562, 611, 672, 764
BlsI	GCNGC	7 cut(s)	45, 287, 313, 563, 612, 673, 765
Bme1390I	CCNGG	5 cut(s)	77, 123, 441, 732, 938
BmiI	GGNNCC	2 cut(s)	438, 829
BmrFI	CCNGG	5 cut(s)	77, 123, 441, 732, 938
BmsI	GCATC	3 cut(s)	10, 616, 979
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	762
BsaAI	YACGTR	2 cut(s)	638, 902
BsaJI	CCNNGG	4 cut(s)	122, 233, 440, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 257, 433, 603
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	571
BseBI	CCWGG	5 cut(s)	77, 123, 441, 732, 938
BseDI	CCNNGG	4 cut(s)	122, 233, 440, 731
BseGI	GGATG	2 cut(s)	472, 1023
BseLI	CCNNNNNNNGG	4 cut(s)	256, 257, 433, 603
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	5 cut(s)	297, 298, 597, 658, 750
BsgI	GTGCAG	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	5, 885
BslI	CCNNNNNNNGG	4 cut(s)	256, 257, 433, 603
BsmAI	GTCTC	3 cut(s)	69, 121, 805
BsmBI	CGTCTC	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	656, 838, 1022
BspACI	CCGC	2 cut(s)	43, 561
BspCNI	CTCAG	1 cut(s)	694
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	2 cut(s)	438, 829
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	2 cut(s)	664, 846
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	4 cut(s)	122, 233, 440, 731
BssMI	GATC	3 cut(s)	656, 838, 1022
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	5 cut(s)	77, 123, 441, 732, 938
Bst4CI	ACNGT	4 cut(s)	191, 678, 809, 1057
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstBAI	YACGTR	2 cut(s)	638, 902
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	4 cut(s)	523, 544, 602, 702
BstF5I	GGATG	2 cut(s)	472, 1023
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	3 cut(s)	659, 841, 1025
BstMAI	GTCTC	3 cut(s)	69, 121, 805
BstMBI	GATC	3 cut(s)	656, 838, 1022
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 177, 607, 772
BstNI	CCWGG	5 cut(s)	77, 123, 441, 732, 938
BstSCI	CCNGG	5 cut(s)	75, 121, 439, 730, 936
BstV1I	GCAGC	5 cut(s)	297, 298, 597, 658, 750
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	3 cut(s)	656, 838, 1022
BstYI	RGATCY	3 cut(s)	656, 838, 1022
BsuI	GTATCC	3 cut(s)	73, 379, 464
BtgZI	GCGATG	1 cut(s)	604
BtsCI	GGATG	2 cut(s)	472, 1023
BtsIMutI	CAGTG	2 cut(s)	564, 1062
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	1 cut(s)	994
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	4
Csp6I	GTAC	6 cut(s)	112, 419, 635, 810, 899, 1028
CviAII	CATG	4 cut(s)	337, 480, 598, 713
CviQI	GTAC	6 cut(s)	112, 419, 635, 810, 899, 1028
DdeI	CTNAG	4 cut(s)	523, 544, 602, 702
DpnI	GATC	3 cut(s)	658, 840, 1024
DpnII	GATC	3 cut(s)	656, 838, 1022
Eco130I	CCWWGG	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	529
Eco47III	AGCGCT	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	5 cut(s)	75, 121, 439, 730, 936
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	340, 483, 601, 716
FaiI	YATR	9 cut(s)	86, 157, 167, 338, 481, 590, 599, 714, 846
FalI	AAGNNNNNCTT	2 cut(s)	815, 847
FatI	CATG	4 cut(s)	336, 479, 597, 712
Fnu4HI	GCNGC	7 cut(s)	44, 286, 312, 562, 611, 672, 764
FokI	GGATG	2 cut(s)	479, 1030
Fsp4HI	GCNGC	7 cut(s)	44, 286, 312, 562, 611, 672, 764
FspBI	CTAG	3 cut(s)	416, 719, 741
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	7 cut(s)	44, 286, 312, 562, 611, 672, 764
GsuI	CTGGAG	1 cut(s)	588
HaeII	RGCGCY	1 cut(s)	291
HapII	CCGG	2 cut(s)	5, 885
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	4 cut(s)	340, 483, 601, 716
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	2 cut(s)	5, 885
HphI	GGTGA	2 cut(s)	19, 982
Hpy166II	GTNNAC	4 cut(s)	112, 226, 635, 784
Hpy188I	TCNGA	2 cut(s)	661, 805
Hpy188III	TCNNGA	4 cut(s)	138, 434, 464, 713
Hpy8I	GTNNAC	4 cut(s)	112, 226, 635, 784
HpyAV	CCTTC	2 cut(s)	566, 817
HpyCH4III	ACNGT	4 cut(s)	191, 678, 809, 1057
HpyCH4IV	ACGT	3 cut(s)	114, 637, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 177, 607, 772
HpyF3I	CTNAG	4 cut(s)	523, 544, 602, 702
HpySE526I	ACGT	3 cut(s)	114, 637, 901
Hsp92II	CATG	4 cut(s)	340, 483, 601, 716
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	656, 838, 1022
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	5 cut(s)	297, 298, 597, 658, 750
LweI	GCATC	3 cut(s)	10, 616, 979
MaeI	CTAG	3 cut(s)	416, 719, 741
MaeII	ACGT	3 cut(s)	114, 637, 901
MaeIII	GTNAC	2 cut(s)	697, 751
MalI	GATC	3 cut(s)	658, 840, 1024
MboI	GATC	3 cut(s)	656, 838, 1022
MboII	GAAGA	4 cut(s)	29, 920, 929, 998
MflI	RGATCY	3 cut(s)	656, 838, 1022
MluCI	AATT	5 cut(s)	162, 243, 411, 459, 662
MnlI	CCTC	6 cut(s)	231, 438, 441, 624, 786, 1036
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	7 cut(s)	101, 324, 398, 519, 816, 834, 1035
MspA1I	CMGCKG	1 cut(s)	763
MspI	CCGG	2 cut(s)	5, 885
MspR9I	CCNGG	5 cut(s)	77, 123, 441, 732, 938
MvaI	CCWGG	5 cut(s)	77, 123, 441, 732, 938
MwoI	GCNNNNNNNGC	4 cut(s)	20, 177, 607, 772
NdeII	GATC	3 cut(s)	656, 838, 1022
NlaIII	CATG	4 cut(s)	340, 483, 601, 716
NlaIV	GGNNCC	2 cut(s)	438, 829
NmuCI	GTSAC	1 cut(s)	751
PagI	TCATGA	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	45, 287, 313, 563, 612, 673, 765
Ppu21I	YACGTR	2 cut(s)	638, 902
Psp6I	CCWGG	5 cut(s)	75, 121, 439, 730, 936
PspGI	CCWGG	5 cut(s)	75, 121, 439, 730, 936
PspN4I	GGNNCC	2 cut(s)	438, 829
PsuI	RGATCY	3 cut(s)	656, 838, 1022
PvuII	CAGCTG	1 cut(s)	763
RsaI	GTAC	6 cut(s)	113, 420, 636, 811, 900, 1029
RsaNI	GTAC	6 cut(s)	112, 419, 635, 810, 899, 1028
SaqAI	TTAA	7 cut(s)	101, 324, 398, 519, 816, 834, 1035
SatI	GCNGC	7 cut(s)	44, 286, 312, 562, 611, 672, 764
Sau3AI	GATC	3 cut(s)	656, 838, 1022
ScrFI	CCNGG	5 cut(s)	77, 123, 441, 732, 938
SfaNI	GCATC	3 cut(s)	10, 616, 979
SmlI	CTYRAG	1 cut(s)	777
SmoI	CTYRAG	1 cut(s)	777
Sse9I	AATT	5 cut(s)	162, 243, 411, 459, 662
SsiI	CCGC	2 cut(s)	43, 561
SspMI	CTAG	3 cut(s)	416, 719, 741
StyD4I	CCNGG	5 cut(s)	75, 121, 439, 730, 936
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	4 cut(s)	191, 678, 809, 1057
TaiI	ACGT	3 cut(s)	117, 640, 904
TasI	AATT	5 cut(s)	162, 243, 411, 459, 662
TatI	WGTACW	1 cut(s)	1027
TauI	GCSGC	2 cut(s)	46, 564
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	7 cut(s)	101, 324, 398, 519, 816, 834, 1035
Tru9I	TTAA	7 cut(s)	101, 324, 398, 519, 816, 834, 1035
TscAI	CASTG	2 cut(s)	571, 1062
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	5 cut(s)	285, 311, 610, 671, 763
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	3 cut(s)	202, 468, 861
TspRI	CASTG	2 cut(s)	571, 1062
XapI	RAATTY	2 cut(s)	411, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	3 cut(s)	416, 719, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.