Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Reverse (-)

83201322 .. 83218933

Gene Structure 17612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4689 bp

ATGGGTTTTAAGCCAATAGACTGGTATTGTCAACCAGAAGCTAATGGGGTATGGGCCAAAGCAGTCAGTGCTTTTGGCTCATACACTCCTTGTGCAATGGACTCTATGGTCATCTGCACTTCTCATTTAGTTCTTTTCAGCCTGTGCTGCTATCGAATATGGATGATCAAGAAGAATTTGAAAGCCCGGAGGTTCAGGTTGAGGTCAAATTACTATAACTGCTTGTTGGGTTTGTTGGCTGGTTACTCCACTGCTGAGCCTCTACTGAGGTTGGTGATGGGTTTATCACTTTTTAACCCCTTTGGACAAACTGGCTTTGCTCCTTTTGAGATGACTTCTTCAATCATTGAAGCTCTTTCTTGGTTCTCTATGCTAATTTTAATTGGCTTGGAAACTAAGATTTACATTCGGGAATTCCGATGGTACGTAAGGTTTGGAGTCCTTTATGTCTTGGTAGGAGATGCTGTGCTGCTAAATCTTATTCTTGGAGTGGCACATTCCTACAGTGGATATGCTTTATGTCTGTATATAAGCACTGTCTGTTGCCAGGTGTTGTTCGGAATTCTTCTTCTCTTTTATGTTCCCCATCTGGATCCTTATCCTGGCTACATTTTTCTGCAATCTGAGTCACTTGACAATGCTGAATATGAAGCACTACCAGGAGAAGATCAAATTTGCCCTGAACGGCATGTTAATATATTCTCCAGAATATATTTTGGCTGGATGACTCCACTTATGCAGCTAGGATACAGAAAACCCATCACTGAAACAGATGTTTGGAAGTTGGACACATGGGATCAGACAGAGACATTGATTAAAAGGTTTCAGGAATGTTGGGTTGAAGAATCTCAGAGGCCCAAGCCATGGCTTCTGAGAGCACTGCATCATAGCCTTGGACGGAGGTTCTGGTTGGGAGGCTTTTTCAAGATTTGCCATGATCTCTCTCAGTTTTTGGGTCCCATTCTATTAAATCGTCTTTTGCAGTCAATGCAACGAGGTGAACCAGCTTGGATTGGTTATATATATGCCTTCTTAATTTTCATTGGTTTGTCATTTGGTGTGCTCCCTGAATCTCACTTTTACCAGAATATTATGCGGGTCGGCTTTCGGTTGAGATCAACTTTGGTTGCTGCTATATTCCGTAAATCTATAAGAATAACACATGAGGGCCATAAGAAGTTCCCAACTGGGAAGATAACAAATATGATGTCTACAGATGCTAATGCACTCGAGAAAACATGCGAACAACTTCACGGACTATGGTCTGCTCCTTTTAGTATCATTGTAGCTATGGTTCTTCTTTACCAACAATTAGGTATTGCATCGCTTATTGGATCATTGATGCTAGTTCTCACGATCCCCATACAGACAACGGTGATCAGCAAAATGCGGAAACTGACAAAGGATGGACTGCAACAGACTGACAAGAGAGTTGGCCTCATGAATGAAATTTTAGCTGCCATGGATACGGTGAAATGTTATGCATGGGAGACAAGTTTCCAGCAGCGAGTCCAAAGTATACGGAATGATGAACTTTCAAGGTTACGTAGAGCGCAGTTACTATCTGCTTTGAACAGTTTTATTCTCGAAAGCATCCCAGTTGTTGTGACAGTAACTTCATTTGGAGCATTCACTTTTCTTGGAGGCGAATTGACACCTGCAAGGGCATTTACATCACTTTCTCTTTTTGCAGTGCTACGCTTCCCTGTAAACATGCTGCCCAACTTATTAAGTCAGGTTGTAAATGCACATGTATCCTTACAGCGTTTGGAAGAACTATTTTTAACTGAGGAGAGAATTCTAGTACCCAACCCGCCACTGGAACCAGGGCTTCCAGCCATCTCAATTCAGGATGGATACTTTTCATGGGATTCAAAGGCAGAGAAGCCCACATTATCAAACATCAACTTAGATGTACCAGTTGGCAGCTTAGTTGCAGTTGTTGGCGGCACTGGAGAAGGAAAGACATCACTTATATCAGCCATGCTTGGGGAGCTGCCTCCCATTGCAGATGCAGGAGTTGTAATTAGGGGAACTGTTGCTTATGTTCCCCAAGTTTCATGGATTTTCAATGCTACTGTACGTGAAAACATTTTATTTGGATCTGAATTTGAAGCTGCACGGTATTGGAAGGCTATTGATGTAACTGAGTTCCATCATGACCTCGACTTACTTCCAGGTCGAGATCTAACAGAGATTGGTGAAAGAGGGGTCAATATTAGTGGAGGTCAAAAGCAAAGGGTTTCAATGGCCAGAGCTGTATATTCTAATTCAGATGTTTACATATTTGACGATGCATTAAGTGCTCTAGATGCTCATGTTGCTAGACAGGTTTTCAACCGCTGTATCAAGGAAGAGTTGCAGGGGAAAACTAGGGTGCTTGTCACAAATCAACTACATTTTCTGCCTCAAGTGGACAAAGTTATTTTAGTCTCTGACGGTACGATTAAAGAGAAAGGAACCTTCAAGGATCTCTCTGAAAACAGTTTGCTGTTCCAGAAGCTCATGGAAAATGCTGGAAAAATGGAAGAACACGTAGAAAAGAAGGAAGACAGCAAAACTGATTACCAGGAAAGCTCAGTTCCTGTGTCTAATGGGGTGGTGAATGACTTGCCAAAAGATGCAAGCTACACGAAGAAAGGGAAAGGGATGAGATCTGTACTCATTAACCAAGAGGAACGGGAAACAGGTGTTGTAAGTTGGAAAATTTTGCAGAGGTACAACCTTGCATTAGGAGGGCTATGGGTGGTTATGGTTCTATTTACTTGTTATACACTAACAGAAGTTCTTCGAGTTTCAAGCAGTACATGGTTAAGTTTTTGGACAGATCAAAGCATGTCAAAGAGTTATACACCTGGATTCTACTTGCTGATATATGCGATTCTCTCAATTGCTCAGGTAACAGTGACTCTGACGAACTCTTTTTGGCTAATCACTTCAAGTCTTCATGCAGCCCGAAATTTGCATGATTCCCTGCTACATGCTATACTAAAAGCTCCAATGGTGTTCTTTCACACTAACCCAACTGGAAGGATAATCAATAGGTTTGCAAAAGATCTGGATGATATAGATCGCAATGTAGCCAATTTTATGAACTCGTTTCTGGGTAGAGTGTGGCAGCTCCTTTCGAGTTTTGTTCTCATAGGCATTGTGAGCACAATATCCCTCTGGGCCATAATGCCACTTCTAATTTTGTTCTATGCAGCCTATCTATTCTATCAGAGCACATCCCGTGAAGTGAAACGCTTGGATTCCATTACCAGGTCTCCTATTTATGCACAGTTTGGAGAAGCATTAAATGGATTGTCATCAATTCGTGCCTATCATGCTTATGATTGGATGGCAAACAGTAGTGGAAGGTCTATGGATAATAATATCAGATTCACTCTTGTGATTGGTGGTTCAAACCGCTGGCTTGCTATAAGGTTGGAAACACTAGGAGGTATCATGATTTGGGTGATAGCAACCTTTTCTGTCATGCAGAATGGAAGAGCAGAAAACCAAGTACAATTTGCATCTACAATGGGTCTACTTCTCACTTATACTTTGAATATCACAAGTCTGTTGAGTGATGTTCTTAGACAAGCAAGCAGGGCTGAAAATAGTTTAAATGCTGTTGAGCGGGTCGGGACATATATAGATTTGCCTTCTGAGGCTCCAGCTGTTATTGAAAGCAACCGTCCTCCACATGGGTGGCCATCATCAGGATCAATCGAGTTTGAGGATGTTGTTCTCCGTTATAGGCCTGGACTTTCACCAGTACTGCACGGATTATCGTTTACAGTTTCTGCAAGTGAGAAGCTAGGAATAGTTGGAAGAACTGGTGCTGGCAAATCTAGCATGATTAATGCATTGTTTAGGATAGTAGAACTAGAAAAAGGAAGCATCTTGATTGATGGTTGTGATGTTTCTAAGTTTGGACTGGAAGATTTGCGAAAAGTTCTTAGCATCATACCCCAGTCACCTGTTCTTTTTTCAGGAACTGTGCGGTTTAATCTTGATCCTTTCAGTGAGCATAATGATGCTGACCTTTGGGAAGCCCTAGAAAGGGCACATCTAAAGGATGTAATTAGGAGGAATTCCTGTGGTCTCGATGCTGAGGTTTCCGAGGGCGGTGAGAATTTCAGTGTTGGACAGAGGCAGCTAATAAGTCTTGCTAGAGCATTGCTACAGAGATCAAAGATTCTTGTTCTTGATGAAGCAACTGCAGCTGTCGATGTTAGAACTGATGCTCTCATCCAAAAAACCATACGTGAAGAATTCAAATCATGCACCATGCTGGTTATTGCTCACAGATTGAACACCATTATTGACTGTGATCGAATTCTTGTTCTTGATGCTGGTCAGGTCCTAGAACATGGTTCCCCAGAAGAACTACTGCTAAATGAAGAGAGCGCTTTCTCCAAGATGGTCAGTAGTACAGGACCTTGTAATGCTCAGTACTTACGCAGCCTGGTATTTGAAGGCAAGCAGAATAACGTGAATAGAGACGAAGCCGAGCAACTGGTTGACCAGAGCCAGAGGAGATCGCGCTGGGCCACTGCTGCTCAATTTGCCATGGCTGTTAGCCTCACATCCTCACAGAACGATCTCCAAAGGTTAGATATTGGAGATGAGGACAATATCCTCATGAAAACCAAGGATGCGCGCAGTTATAACACTACAGGGAGTTCTGGAAGGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1562

Amino Acids

175.2

Weight (kDa)

6.99

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	303 - 570	9.3e-41	ABC transporter transmembrane region
ABC_tran	PF00005	632 - 767	1.9e-17	ABC transporter
ABC_membrane	PF00664	918 - 1178	2e-29	ABC transporter transmembrane region
ABC_tran	PF00005	1255 - 1403	7.2e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4656
AarI	CACCTGC	1 cut(s)	1666
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	1666
AccB7I	CCANNNNNTGG	1 cut(s)	864
AccBSI	CCGCTC	1 cut(s)	3622
AccI	GTMKAC	3 cut(s)	1211, 1519, 3529
AccII	CGCG	2 cut(s)	4531, 4648
AciI	CCGC	9 cut(s)	1096, 1390, 1814, 1947, 2341, 3409, 3622, 3988, 4113
AclWI	GGATC	9 cut(s)	587, 600, 804, 1342, 1351, 2110, 2478, 3715, 3995
AcoI	YGGCCR	2 cut(s)	2250, 3695
AfeI	AGCGCT	1 cut(s)	4396
AfiI	CCNNNNNNNGG	9 cut(s)	602, 864, 1819, 1989, 3261, 3689, 3704, 4047, 4048
AflIII	ACRYGT	2 cut(s)	1750, 2533
AleI	CACNNNNGTG	2 cut(s)	3389, 3691
Alw21I	GWGCWC	5 cut(s)	880, 1065, 2308, 3158, 3227
Alw26I	GTCTC	6 cut(s)	800, 1484, 2437, 3270, 4094, 4482
AlwI	GGATC	9 cut(s)	587, 600, 804, 1342, 1351, 2110, 2478, 3715, 3995
AlwNI	CAGNNNCTG	3 cut(s)	2585, 3788, 3983
Ama87I	CYCGRG	1 cut(s)	1229
Aor51HI	AGCGCT	1 cut(s)	4396
AoxI	GGCC	9 cut(s)	54, 854, 1168, 1435, 2250, 3171, 3695, 3743, 4536
ArsI	GACNNNNNNTTYG	2 cut(s)	1193, 1225
AseI	ATTAAT	1 cut(s)	3846
Asp700I	GAANNNNTTC	2 cut(s)	1248, 2787
AspLEI	GCGC	5 cut(s)	1555, 4397, 4533, 4648, 4650
AspS9I	GGNCC	8 cut(s)	54, 855, 956, 1168, 3171, 4348, 4424, 4536
AsuC2I	CCSGG	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	1229
AvaII	GGWCC	3 cut(s)	956, 4348, 4424
BaeGI	GKGCMC	1 cut(s)	4054
BaeI	ACNNNNGTAYC	2 cut(s)	2329, 2362
BalI	TGGCCA	2 cut(s)	2252, 3697
BamHI	GGATCC	1 cut(s)	592
BbsI	GAAGAC	2 cut(s)	2556, 2936
Bbv12I	GWGCWC	5 cut(s)	880, 1065, 2308, 3158, 3227
BbvCI	CCTCAGC	1 cut(s)	4098
BceAI	ACGGC	1 cut(s)	701
BciVI	GTATCC	4 cut(s)	740, 1459, 1765, 1850
BclI	TGATCA	2 cut(s)	165, 1377
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	6 cut(s)	800, 1484, 2437, 3270, 4094, 4482
BfmI	CTRYAG	5 cut(s)	502, 1212, 4169, 4206, 4662
BfoI	RGCGCY	1 cut(s)	4398
BfuAI	ACCTGC	1 cut(s)	1666
BfuI	GTATCC	4 cut(s)	740, 1459, 1765, 1850
BglII	AGATCT	3 cut(s)	2185, 2654, 3055
BlpI	GCTNAGC	1 cut(s)	255
BmcAI	AGTACT	2 cut(s)	3762, 4442
Bme18I	GGWCC	3 cut(s)	956, 4348, 4424
BmeT110I	CYCGRG	1 cut(s)	1229
BmgT120I	GGNCC	8 cut(s)	54, 855, 956, 1168, 3171, 4348, 4424, 4536
BmiI	GGNNCC	7 cut(s)	594, 957, 958, 1824, 2461, 3657, 4363
BmrI	ACTGGG	3 cut(s)	1197, 1592, 3952
BmuI	ACTGGG	3 cut(s)	1197, 1592, 3952
BoxI	GACNNNNGTC	1 cut(s)	1261
BpiI	GAAGAC	2 cut(s)	2556, 2936
BplI	GAGNNNNNCTC	2 cut(s)	1422, 1454
BpmI	CTGGAG	3 cut(s)	688, 1974, 3642
Bpu10I	CCTNAGC	2 cut(s)	2895, 4098
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	2394
BpuMI	CCSGG	1 cut(s)	187
BsaAI	YACGTR	5 cut(s)	427, 1547, 2084, 2536, 4253
BsaBI	GATNNNNATC	3 cut(s)	597, 3069, 3307
BsaI	GGTCTC	2 cut(s)	3270, 4094
BsaJI	CCNNGG	7 cut(s)	863, 892, 1461, 1826, 4107, 4557, 4638
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 480, 3250, 3280
Bsc4I	CCNNNNNNNGG	9 cut(s)	602, 864, 1819, 1989, 3261, 3689, 3704, 4047, 4048
Bse3DI	GCAATG	4 cut(s)	102, 2004, 3082, 4163
Bse8I	GATNNNNATC	3 cut(s)	597, 3069, 3307
BseDI	CCNNGG	7 cut(s)	863, 892, 1461, 1826, 4107, 4557, 4638
BseJI	GATNNNNATC	3 cut(s)	597, 3069, 3307
BseLI	CCNNNNNNNGG	9 cut(s)	602, 864, 1819, 1989, 3261, 3689, 3704, 4047, 4048
BseMI	GCAATG	4 cut(s)	102, 2004, 3082, 4163
BsePI	GCGCGC	1 cut(s)	4646
BseRI	GAGGAG	2 cut(s)	1805, 4537
BseSI	GKGCMC	1 cut(s)	4054
BseYI	CCCAGC	1 cut(s)	4533
BsgI	GTGCAG	3 cut(s)	100, 2103, 3749
Bsh1236I	CGCG	2 cut(s)	4531, 4648
BshFI	GGCC	9 cut(s)	56, 856, 1170, 1437, 2252, 3173, 3697, 3745, 4538
BsiHKAI	GWGCWC	5 cut(s)	880, 1065, 2308, 3158, 3227
BsiHKCI	CYCGRG	1 cut(s)	1229
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	2 cut(s)	942, 3643
BslI	CCNNNNNNNGG	9 cut(s)	602, 864, 1819, 1989, 3261, 3689, 3704, 4047, 4048
BsmAI	GTCTC	6 cut(s)	800, 1484, 2437, 3270, 4094, 4482
BsmBI	CGTCTC	1 cut(s)	4482
BsmFI	GGGAC	2 cut(s)	942, 3643
BsmI	GAATGC	1 cut(s)	1628
BsnI	GGCC	9 cut(s)	56, 856, 1170, 1437, 2252, 3173, 3697, 3745, 4538
Bso31I	GGTCTC	2 cut(s)	3270, 4094
BsoBI	CYCGRG	1 cut(s)	1229
Bsp1286I	GDGCHC	6 cut(s)	880, 1065, 2308, 3158, 3227, 4054
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	3 cut(s)	863, 1461, 4557
BspACI	CCGC	9 cut(s)	1096, 1390, 1814, 1947, 2341, 3409, 3622, 3988, 4113
BspANI	GGCC	9 cut(s)	56, 856, 1170, 1437, 2252, 3173, 3697, 3745, 4538
BspFNI	CGCG	2 cut(s)	4531, 4648
BspHI	TCATGA	4 cut(s)	1440, 2158, 3447, 4629
BspLI	GGNNCC	7 cut(s)	594, 957, 958, 1824, 2461, 3657, 4363
BspMAI	CTGCAG	1 cut(s)	4210
BspMI	ACCTGC	1 cut(s)	1666
BspPI	GGATC	9 cut(s)	587, 600, 804, 1342, 1351, 2110, 2478, 3715, 3995
BspQI	GCTCTTC	1 cut(s)	3484
BspTNI	GGTCTC	2 cut(s)	3270, 4094
BsrBI	CCGCTC	1 cut(s)	3622
BsrDI	GCAATG	4 cut(s)	102, 2004, 3082, 4163
BssECI	CCNNGG	7 cut(s)	863, 892, 1461, 1826, 4107, 4557, 4638
BssHII	GCGCGC	1 cut(s)	4646
BssNAI	GTATAC	1 cut(s)	1520
BssT1I	CCWWGG	5 cut(s)	863, 892, 1461, 4557, 4638
Bst1107I	GTATAC	1 cut(s)	1520
Bst6I	CTCTTC	3 cut(s)	2349, 3484, 4383
BstAPI	GCANNNNNTGC	3 cut(s)	68, 988, 2303
BstBAI	YACGTR	5 cut(s)	427, 1547, 2084, 2536, 4253
BstC8I	GCNNGC	7 cut(s)	2626, 3413, 3417, 3589, 3829, 4469, 4648
BstDSI	CCRYGG	3 cut(s)	863, 1461, 4557
BstFNI	CGCG	2 cut(s)	4531, 4648
BstH2I	RGCGCY	1 cut(s)	4398
BstHHI	GCGC	5 cut(s)	1555, 4397, 4533, 4648, 4650
BstMAI	GTCTC	6 cut(s)	800, 1484, 2437, 3270, 4094, 4482
BstNSI	RCATGY	6 cut(s)	692, 1242, 1717, 1754, 2839, 2984
BstPAI	GACNNNNGTC	1 cut(s)	1261
BstSFI	CTRYAG	5 cut(s)	502, 1212, 4169, 4206, 4662
BstSLI	GKGCMC	1 cut(s)	4054
BstSNI	TACGTA	2 cut(s)	427, 1547
BstUI	CGCG	2 cut(s)	4531, 4648
BstV2I	GAAGAC	2 cut(s)	2556, 2936
BstX2I	RGATCY	6 cut(s)	592, 2102, 2185, 2470, 2654, 3055
BstXI	CCANNNNNNTGG	2 cut(s)	21, 3693
BstYI	RGATCY	6 cut(s)	592, 2102, 2185, 2470, 2654, 3055
BstZ17I	GTATAC	1 cut(s)	1520
BsuI	GTATCC	4 cut(s)	740, 1459, 1765, 1850
BsuRI	GGCC	9 cut(s)	56, 856, 1170, 1437, 2252, 3173, 3697, 3745, 4538
BtgI	CCRYGG	3 cut(s)	863, 1461, 4557
BtgZI	GCGATG	1 cut(s)	1308
BtsI	GCAGTG	4 cut(s)	249, 878, 1698, 4539
BveI	ACCTGC	1 cut(s)	1666
Cac8I	GCNNGC	7 cut(s)	2626, 3413, 3417, 3589, 3829, 4469, 4648
CaiI	CAGNNNCTG	3 cut(s)	2585, 3788, 3983
CciI	TCATGA	4 cut(s)	1440, 2158, 3447, 4629
CfoI	GCGC	5 cut(s)	1555, 4397, 4533, 4648, 4650
Cfr13I	GGNCC	8 cut(s)	54, 855, 956, 1168, 3171, 4348, 4424, 4536
CsiI	ACCWGGT	1 cut(s)	3260
CspCI	CAANNNNNGTGG	2 cut(s)	2203, 2238
DraI	TTTAAA	1 cut(s)	3609
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	2 cut(s)	2250, 3695
Eam1104I	CTCTTC	3 cut(s)	2349, 3484, 4383
EarI	CTCTTC	3 cut(s)	2349, 3484, 4383
Eco105I	TACGTA	2 cut(s)	427, 1547
Eco130I	CCWWGG	5 cut(s)	863, 892, 1461, 4557, 4638
Eco147I	AGGCCT	1 cut(s)	3745
Eco31I	GGTCTC	2 cut(s)	3270, 4094
Eco47I	GGWCC	3 cut(s)	956, 4348, 4424
Eco47III	AGCGCT	1 cut(s)	4396
Eco88I	CYCGRG	1 cut(s)	1229
EcoO109I	RGGNCCY	3 cut(s)	956, 4348, 4424
EcoRI	GAATTC	6 cut(s)	413, 561, 1797, 4078, 4259, 4323
EcoT14I	CCWWGG	5 cut(s)	863, 892, 1461, 4557, 4638
EcoT22I	ATGCAT	3 cut(s)	1486, 2299, 3853
ErhI	CCWWGG	5 cut(s)	863, 892, 1461, 4557, 4638
Esp3I	CGTCTC	1 cut(s)	4482
FaqI	GGGAC	2 cut(s)	942, 3643
FauI	CCCGC	3 cut(s)	1089, 1821, 3615
FbaI	TGATCA	2 cut(s)	165, 1377
FblI	GTMKAC	3 cut(s)	1211, 1519, 3529
GlaI	GCGC	5 cut(s)	1554, 4396, 4532, 4647, 4649
GsaI	CCCAGC	1 cut(s)	4537
GsuI	CTGGAG	3 cut(s)	688, 1974, 3642
HaeII	RGCGCY	1 cut(s)	4398
HaeIII	GGCC	9 cut(s)	56, 856, 1170, 1437, 2252, 3173, 3697, 3745, 4538
HapII	CCGG	1 cut(s)	187
HhaI	GCGC	5 cut(s)	1555, 4397, 4533, 4648, 4650
Hin6I	GCGC	5 cut(s)	1553, 4395, 4531, 4646, 4648
HinP1I	GCGC	5 cut(s)	1553, 4395, 4531, 4646, 4648
HincII	GTYRAC	2 cut(s)	32, 4510
HindII	GTYRAC	2 cut(s)	32, 4510
HpaII	CCGG	1 cut(s)	187
HpyCH4IV	ACGT	6 cut(s)	426, 1546, 2083, 2535, 4252, 4479
HpySE526I	ACGT	6 cut(s)	426, 1546, 2083, 2535, 4252, 4479
HspAI	GCGC	5 cut(s)	1553, 4395, 4531, 4646, 4648
KflI	GGGWCCC	1 cut(s)	956
Ksp22I	TGATCA	2 cut(s)	165, 1377
LguI	GCTCTTC	1 cut(s)	3484
LmnI	GCTCC	8 cut(s)	325, 1068, 1273, 1625, 1993, 3001, 3126, 3661
MabI	ACCWGGT	1 cut(s)	3260
MaeII	ACGT	6 cut(s)	426, 1546, 2083, 2535, 4252, 4479
MbiI	CCGCTC	1 cut(s)	3622
MfeI	CAATTG	1 cut(s)	2889
MflI	RGATCY	6 cut(s)	592, 2102, 2185, 2470, 2654, 3055
MhlI	GDGCHC	6 cut(s)	880, 1065, 2308, 3158, 3227, 4054
MlsI	TGGCCA	2 cut(s)	2252, 3697
MluNI	TGGCCA	2 cut(s)	2252, 3697
MlyI	GAGTC	6 cut(s)	95, 447, 635, 721, 1518, 2902
MmeI	TCCRAC	5 cut(s)	765, 2681, 3408, 3793, 4111
Mox20I	TGGCCA	2 cut(s)	2252, 3697
Mph1103I	ATGCAT	3 cut(s)	1486, 2299, 3853
MroXI	GAANNNNTTC	2 cut(s)	1248, 2787
MscI	TGGCCA	2 cut(s)	2252, 3697
MslI	CAYNNNNRTG	4 cut(s)	3330, 3389, 3691, 4020
Msp20I	TGGCCA	2 cut(s)	2252, 3697
MspA1I	CMGCKG	4 cut(s)	2343, 3411, 3662, 4211
MspI	CCGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	2889
Mva1269I	GAATGC	1 cut(s)	1628
MvnI	CGCG	2 cut(s)	4531, 4648
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	3 cut(s)	863, 1461, 4557
NlaIV	GGNNCC	7 cut(s)	594, 957, 958, 1824, 2461, 3657, 4363
NmeAIII	GCCGAG	1 cut(s)	4522
NmuCI	GTSAC	5 cut(s)	627, 1606, 2383, 2905, 3960
NsiI	ATGCAT	3 cut(s)	1486, 2299, 3853
NspI	RCATGY	6 cut(s)	692, 1242, 1717, 1754, 2839, 2984
OliI	CACNNNNGTG	2 cut(s)	3389, 3691
PaeR7I	CTCGAG	1 cut(s)	1229
PagI	TCATGA	4 cut(s)	1440, 2158, 3447, 4629
PaqCI	CACCTGC	1 cut(s)	1666
PauI	GCGCGC	1 cut(s)	4646
PceI	AGGCCT	1 cut(s)	3745
PciI	ACATGT	1 cut(s)	1750
PciSI	GCTCTTC	1 cut(s)	3484
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PctI	GAATGC	1 cut(s)	1628
PdmI	GAANNNNTTC	2 cut(s)	1248, 2787
PfeI	GAWTC	9 cut(s)	845, 1070, 1871, 2859, 2881, 2969, 3251, 3381, 4183
PflMI	CCANNNNNTGG	1 cut(s)	864
PleI	GAGTC	6 cut(s)	95, 446, 634, 721, 1517, 2902
PpsI	GAGTC	6 cut(s)	95, 446, 634, 721, 1517, 2902
Ppu21I	YACGTR	5 cut(s)	427, 1547, 2084, 2536, 4253
PpuMI	RGGWCCY	3 cut(s)	956, 4348, 4424
PscI	ACATGT	1 cut(s)	1750
PshAI	GACNNNNGTC	1 cut(s)	1261
PshBI	ATTAAT	1 cut(s)	3846
PsiI	TTATAA	1 cut(s)	4656
Psp5II	RGGWCCY	3 cut(s)	956, 4348, 4424
PspFI	CCCAGC	1 cut(s)	4533
PspN4I	GGNNCC	7 cut(s)	594, 957, 958, 1824, 2461, 3657, 4363
PspPI	GGNCC	8 cut(s)	54, 855, 956, 1168, 3171, 4348, 4424, 4536
PspPPI	RGGWCCY	3 cut(s)	956, 4348, 4424
PsrI	GAACNNNNNNTAC	2 cut(s)	1278, 1310
PstI	CTGCAG	1 cut(s)	4210
PstNI	CAGNNNCTG	3 cut(s)	2585, 3788, 3983
PsuI	RGATCY	6 cut(s)	592, 2102, 2185, 2470, 2654, 3055
PteI	GCGCGC	1 cut(s)	4646
PvuII	CAGCTG	2 cut(s)	3662, 4211
RseI	CAYNNNNRTG	4 cut(s)	3330, 3389, 3691, 4020
SapI	GCTCTTC	1 cut(s)	3484
Sau96I	GGNCC	8 cut(s)	54, 855, 956, 1168, 3171, 4348, 4424, 4536
ScaI	AGTACT	2 cut(s)	3762, 4442
SchI	GAGTC	6 cut(s)	95, 447, 635, 721, 1518, 2902
SduI	GDGCHC	6 cut(s)	880, 1065, 2308, 3158, 3227, 4054
SexAI	ACCWGGT	1 cut(s)	3260
SfcI	CTRYAG	5 cut(s)	502, 1212, 4169, 4206, 4662
Sfr274I	CTCGAG	1 cut(s)	1229
SinI	GGWCC	3 cut(s)	956, 4348, 4424
SlaI	CTCGAG	1 cut(s)	1229
SmiMI	CAYNNNNRTG	4 cut(s)	3330, 3389, 3691, 4020
SmlI	CTYRAG	2 cut(s)	1229, 2409
SmoI	CTYRAG	2 cut(s)	1229, 2409
SnaBI	TACGTA	2 cut(s)	427, 1547
SseBI	AGGCCT	1 cut(s)	3745
SsiI	CCGC	9 cut(s)	1096, 1390, 1814, 1947, 2341, 3409, 3622, 3988, 4113
SspI	AATATT	2 cut(s)	1090, 2218
StuI	AGGCCT	1 cut(s)	3745
StyI	CCWWGG	5 cut(s)	863, 892, 1461, 4557, 4638
TaiI	ACGT	6 cut(s)	429, 1549, 2086, 2538, 4255, 4482
TatI	WGTACW	6 cut(s)	2659, 2804, 3505, 3760, 4418, 4440
TauI	GCSGC	1 cut(s)	1950
TfiI	GAWTC	9 cut(s)	845, 1070, 1871, 2859, 2881, 2969, 3251, 3381, 4183
TseFI	GTSAC	5 cut(s)	627, 1606, 2383, 2905, 3960
Tsp45I	GTSAC	5 cut(s)	627, 1606, 2383, 2905, 3960
TspGWI	ACGGA	6 cut(s)	913, 1130, 1269, 1537, 3725, 3783
Van91I	CCANNNNNTGG	1 cut(s)	864
VpaK11BI	GGWCC	3 cut(s)	956, 4348, 4424
VspI	ATTAAT	1 cut(s)	3846
XbaI	TCTAGA	1 cut(s)	2308
XceI	RCATGY	6 cut(s)	692, 1242, 1717, 1754, 2839, 2984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1816
XhoI	CTCGAG	1 cut(s)	1229
XmiI	GTMKAC	3 cut(s)	1211, 1519, 3529
XmnI	GAANNNNTTC	2 cut(s)	1248, 2787
ZrmI	AGTACT	2 cut(s)	3762, 4442
Zsp2I	ATGCAT	3 cut(s)	1486, 2299, 3853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.