Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Reverse (-)

37132701 .. 37133951

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCGGCAACTGACAAAGGATGGACTGCAACAGACTGATAAGAGAGTTGGCCTCATGAATGAAATTTTAGCTGCCATGGACACTGTGAAGTGTTATTCCTGGGAGACAAGTTTCCAGAAGCAAGTTCAAAATATACGAAATTATGAGCTTTCAAGGTTTCATAAAGCGCAATTACTATCTGCTTTGAACAGTTTTATTCTCAACAGCATCCCAGCTGTTGTGACAGTAACTTCATTTGGGGCGTTCACTTTCCTTGGAGGCAAATTGACACCTACAAGGGCATTTACATCACTCTTTCTTTTTGCAGTACGTGCTACGCTTCCCTTTAGAAATGCTGCCCAACTTATTAAGTCAGGCTGTAAATGCAAATGTATCCTTACAGCGTTTGGAGAAACTATTTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

135

Amino Acids

15.11

Weight (kDa)

9.83

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 101	6.7e-14	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	128, 153, 187
AjnI	CCWGG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	71, 148, 215
AluI	AGCT	3 cut(s)	71, 148, 215
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	71, 335
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	58, 322
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	5, 72, 336
BlsI	GCNGC	3 cut(s)	6, 73, 337
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	75, 99, 253
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	75, 99, 253
BseGI	GGATG	2 cut(s)	25, 207
BseXI	GCAGC	2 cut(s)	58, 322
BseYI	CCCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	75, 99, 253
BssT1I	CCWWGG	2 cut(s)	75, 253
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	3 cut(s)	85, 191, 226
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	25, 207
BstHHI	GCGC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 363
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	58, 322
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	25, 207
BtsIMutI	CAGTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	2 cut(s)	55, 76
CviJI	RGCY	5 cut(s)	51, 71, 148, 215, 357
CviKI_1	RGCY	5 cut(s)	51, 71, 148, 215, 357
CviQI	GTAC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	75, 253
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	75, 253
ErhI	CCWWGG	2 cut(s)	75, 253
FaeI	CATG	2 cut(s)	58, 79
FaiI	YATR	5 cut(s)	56, 77, 134, 144, 162
FatI	CATG	2 cut(s)	54, 75
Fnu4HI	GCNGC	3 cut(s)	5, 72, 336
FokI	GGATG	2 cut(s)	32, 194
Fsp4HI	GCNGC	3 cut(s)	5, 72, 336
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	5, 72, 336
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	58, 79
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188III	TCNNGA	2 cut(s)	55, 115
Hpy8I	GTNNAC	1 cut(s)	246
HpyCH4III	ACNGT	3 cut(s)	85, 191, 226
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	28, 305, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 363
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	58, 79
HspAI	GCGC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	85, 112, 128, 225, 339
Lsp1109I	GCAGC	2 cut(s)	58, 322
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	220, 226
MluCI	AATT	4 cut(s)	63, 139, 170, 263
MnlI	CCTC	2 cut(s)	62, 251
MseI	TTAA	2 cut(s)	348, 402
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	311, 363
NcoI	CCATGG	1 cut(s)	75
NlaIII	CATG	2 cut(s)	58, 79
NmuCI	GTSAC	1 cut(s)	220
PagI	TCATGA	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	6, 73, 337
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	348, 402
SatI	GCNGC	3 cut(s)	5, 72, 336
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	6 cut(s)	73, 150, 158, 217, 274, 313
SfaNI	GCATC	1 cut(s)	216
Sse9I	AATT	4 cut(s)	63, 139, 170, 263
SsiI	CCGC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	2 cut(s)	75, 253
TaaI	ACNGT	3 cut(s)	85, 191, 226
TaiI	ACGT	1 cut(s)	313
TasI	AATT	4 cut(s)	63, 139, 170, 263
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	348, 402
Tru9I	TTAA	2 cut(s)	348, 402
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	71, 335
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	4 cut(s)	71, 75, 149, 222
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.