Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Reverse (-)

83232465 .. 83244016

Gene Structure 11552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3873 bp

ATGCAACGAGGTGATCCAGCTTGGATGGGTTACATATATGCCTTCTTAATTTTCATTGGTGTGTCATTTGGCGTGCTCTCTGAATCTCAGTATTTCCAGAATGTTATGAGGGTCGGCTTTCGGTTGAGATCAACTTTGGTAGCTGCTATATTCCGTAAATCTATAAGAATAACGCATGAGGGCCGCAAGAATTTTCCAACTGGGAAGATAACGAATATGATGTCTACAGATGCTAATGCACTCCAGCAAATATGCCAACAACTTCACGGACTATGGTCTGCTCCTTTCCGTATCATTGTAGCTATGACTCTTCTCTACCAACAATTAGGTGTTGCATCGCTTATTGGATCCTTGATGCTAGTTCTCATGATCCCCATACAGACAACTATCATCAGCAAAATGCGGAAACTGACAAAGGATGGACTGCAACAGACTGACAAGAGAGTTGGCCTCATGAATGAAATTTTAGCTGCCATGGACACTGTGAAATGTTATGCCTGGGAGACAAGTTTCCAGCAGCGAGTTCAAAGTATACGGAATGATGAGCTCTCAAGGTTCCGTAAAGCACAATTACTATCTGCTTTGAACAGTTTTATTCTCAACAGCATCCCAGTTGTTGTGACAGTAACTTCATTTGGAGTATTCACTTTTCTTGGAGGTGAATTGACACCTGCTAGGGCGTTTACATCACTTTCTCTTTTTGCAGTGCTACGCTTTCCTTTAAACATGCTGCCCAACTTGTTAAGTCAGGTTGTAAATGCAAATGTATCCTTGCAGCGTTTGGAGGAACTATTTTTAACTGAGGAGAGAATTCTAGTACCCAACCCGCCACTGGAACCAGGGCTTCCAGCCATCTCAATTCAGGATGGGTACTTTTCATGGGATTCAAAGGCAGAGAAACCCACATTATCAAACATCAACTTAGATATACCAGTTGGCAGATTAGTTGCAGTTGTTGGGAGCACTGGAGAAGGAAAGACATCACTTATATCAGCCATGCTTGGGGAGCTGCCTCCCATTGCAGGTGCCAGTGTTGTAATCAGGGGGACTGTTGCTTATGTTCCCCAAGTTTCATGGATTTTCAATGCTACTGTACGTGAAAACATTTTATTTGGATCTGAGTTTGAAGCTGCACGATATTGGAAGGCTATTGATGTGACTGAGTTCCATCATGACCTAGACCTACTTCCAGGTCGAGATCTTACAGAGATAGGTGAAAGAGGGGTCAATATTAGTGGAGGTCAAAAGCAAAGGGTTTCTATGGCTCGAGCTGTATATTCTAATTCAGATGTTTACATATTTGACGACCCATTAAGTGCTTTAGATGCTCATGTTGCTAGAGAGGTTTTCAACCACTGTATCAAGGAAGAGTTGCAGGGGAAAACTAGGGTGCTTGTCACAAATCAGCTACACTTTCTGCCTCAAGTGGATGAAATTATATTAGTCTCTGATGGTACGATTAAAGAGAAGGGAACCTTTAAGGATCTCTCTGAAAACAGTTTTCTGTTCCAGAAGCTAATGGAAAATGCCGGAAAAATGGAAGAACATGTAGAAGAACAGGAAGCCAGCCAAACTGATAAACAGGAAACCTCACTTCCTGTGTCTAACGGGGTGGCAAATGACTTGCCAAAAGATACAAACTACACAAAGAAAGGGAAAGGGATGAGATCTGTACTCATTAGACAAGAGGAACGGGAAACAGGTGTTGTAAGTTGGAAAATTTTGCAGAGGTATAAGCATGCATTAGGAGGCCTATGGGTGGTCATGGTTCTATTTACTTGTTATACACTAACAGAAGTTCTTCGAGTTTCAAGCAGCACATGGTTAAGTTTTTGGACAGACCAAAGCACGTCAAAGAGCTATGCACCTGGATTCTACATTCTTATATATGCAATTCTATCTATTGGTCAGGTAACGGTGACTCTGACGAACTCTTTTTGGCTTATCACTTCAAGTCTTCGTGCAGCCAGAAAATTGCATGATGCCCTGCTACATGCTATACTAAAAGCTCCAATGGTATTCTTTCACACTAACCCAACTGGAAGGATAATCAATAGGTTTGCAAAGGATCTTGGTGATATAGATCGCAATGTAGCCAACTTTATGAACATGTTTCTGGGTCAAGTGTGGCAGCTCCTTTCAACTTTTGTGCTCATAGGCATTGTGAGCACAATATCCCTCTGGGCCATAATGCCACTTCTAATTTTGTTCTATGCAGCCTATCTATTCTATCAGAGCACATCCCGTGAAGTGAAACGCATGGATTCCATTACCAGATCTCCAGTTTATGCACAGTTTGGAGAAGCATTAAATGGTTTGTCATCAATTCGTGCCTATAAAGCTTATGATCGGATGGCAAACATCAGTGGAAGGTCTATGGATAATAACATCAGATTCACTCTTGTGAATATTAGTTCAAACCGCTGGCTTACAATAAGGTTGGAAACACTAGGAGGTATCATGATCTGGGTGATTGCAACCTTTGCTGTCATGCAAAATGGAAGAGCAGAAAACCAAGTACAATTTGCATCTACAATGGGTCTACTTCTCACTTATACTTTGAATATCACTAGTCTGTTGAGTGGTGTTCTTAGACAAGCTAGCAGGGCTGAAAATAGTTTAAATGCCGTTGAGCGGGTTGGATCATATATAGAATTGCCTTCTGAGGCTCCAGCTGTTATTGAAAGCAACCGTCCTCCACATGGGTGGCCATCATCAGGATCAATCGAGTTTGAGGATGTTGTCCTCCGTTATAGGCCTGGACTTCCACCTGTACTGCACGGATTATCGTTTACAGTTTCTGCAAGTGAGAAGCTAGGAATAGTTGGAAGAACTGGTGCTGGCAAATCTAGCATGATTAATGCATTGTTTAGGATAGTAGAAATAGAAAAAGGAAGCATTTTGATTGATGGTTGTAATGTTTCTAAGTTTGGACTGACAGATTTGAGAAAAGTTCTTAGCATCATACCACAATCACCGGTTCTTTTTTCAGGAACTGTGCGGTTTAATCTTGATCCTTTCAGTGAGCATAATGATGCTGACCTTTGGGAAGCCCTGGAAAGGGCACATCTAAAGGATGTCATTAGGAGGAATTCCTTCGGTCTCGATGCTGAGGTTTCCGAGGGCGGTGAGAATTTCAGTGTTGGACAGAGGCAGCTAATAAGTCTTGCTAGAGCATTGCTAAGGAGATCAAAGATTCTTGTTCTTGATGAAGCAACTGCAGCTGTGGATGTTAGAACTGATGCTCTCATCCAAAAAACCATACGTGAAGAATTCAAATCATGCACCATGCTCGTTATTGCTCACAGATTGAACACCATTATCGACTGTGATCGAATTCTTGTTCTTGATGCTGGTCAGGTCCTAGAACATGGTTCCCCAGAAGAACTACTGCTAAATGAAGAGAGCGCATTCTCCAAGATGGTCAGGAGTACAGGACCTTCTAATGCTCAGTACTTACGCAGCTTGGTATTTGAAGGCAAGCAGAATAAGGTGAATATAGACGAAGCCGAGCAACTGGTTGGCCAGAGTCAGAGGAGATGGTTAGCCTCTTCGCGCTGGGCAGCTGCTGCCCAATTTGCCTTGGCTGTCAGTCTCACATCCTCACAGAACGATCTCCAAAGGTTGGATATTGGAGACGAGGACAATATCCTGATGAAAACAAAGGATGCAGTTATAACACTACAGGGAGTTTTGGAAGGAAAGCATGATACAGATATAGACATATCACTAAATCAGCACCATATTCCAAGGGAGGGGTGGTGGTCAGCTTTCTTCAGAATAGTTGAAGGTCTGGCCGTGATGGGCAGGCTGGCTCAGAACAGACTCCATTCTTTAGAAGATGACGATTTTGAGGACCAGTCTTTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1290

Amino Acids

144.0

Weight (kDa)

6.66

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	4 - 241	7.1e-35	ABC transporter transmembrane region
ABC_tran	PF00005	303 - 438	3.4e-19	ABC transporter
ABC_membrane	PF00664	589 - 850	1.9e-30	ABC transporter transmembrane region
ABC_tran	PF00005	926 - 1074	1.8e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3677
AarI	CACCTGC	2 cut(s)	679, 1013
Acc36I	ACCTGC	2 cut(s)	679, 1013
AccB1I	GGYRCC	1 cut(s)	1025
AccB7I	CCANNNNNTGG	1 cut(s)	3625
AccBSI	CCGCTC	1 cut(s)	2635
AccI	GTMKAC	3 cut(s)	224, 532, 2542
AccII	CGCG	1 cut(s)	3556
AciI	CCGC	7 cut(s)	184, 403, 827, 2422, 2635, 3001, 3126
AcoI	YGGCCR	3 cut(s)	2708, 3523, 3795
AcsI	RAATTY	8 cut(s)	190, 462, 810, 1719, 3091, 3133, 3272, 3336
AcuI	CTGAAG	1 cut(s)	3760
AfaI	GTAC	9 cut(s)	819, 872, 1095, 1456, 1674, 2520, 2775, 3433, 3455
AflIII	ACRYGT	2 cut(s)	1546, 2109
AgeI	ACCGGT	1 cut(s)	2977
AhlI	ACTAGT	1 cut(s)	2570
AjiI	CACGTC	1 cut(s)	1851
AjnI	CCWGG	6 cut(s)	497, 838, 1189, 1867, 2758, 3054
AleI	CACNNNNGTG	2 cut(s)	2402, 2704
Alw21I	GWGCWC	6 cut(s)	78, 549, 965, 2154, 2171, 2240
Alw26I	GTCTC	5 cut(s)	497, 1450, 3107, 3599, 3630
AlwNI	CAGNNNCTG	3 cut(s)	2801, 2996, 3569
Ama87I	CYCGRG	1 cut(s)	1266
AoxI	GGCC	8 cut(s)	181, 448, 1750, 2184, 2708, 2756, 3523, 3795
ApoI	RAATTY	8 cut(s)	190, 462, 810, 1719, 3091, 3133, 3272, 3336
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AseI	ATTAAT	1 cut(s)	2859
AsiGI	ACCGGT	1 cut(s)	2977
Asp700I	GAANNNNTTC	2 cut(s)	1800, 3095
AspLEI	GCGC	2 cut(s)	3410, 3558
AspS9I	GGNCC	5 cut(s)	181, 2184, 3361, 3437, 3856
AsuHPI	GGTGA	9 cut(s)	23, 671, 1226, 1930, 2087, 2482, 2967, 3140, 3505
AsuNHI	GCTAGC	1 cut(s)	2600
AvaI	CYCGRG	1 cut(s)	1266
AvaII	GGWCC	3 cut(s)	3361, 3437, 3856
BaeGI	GKGCMC	1 cut(s)	3067
BaeI	ACNNNNGTAYC	2 cut(s)	1342, 1375
BalI	TGGCCA	2 cut(s)	2710, 3525
BamHI	GGATCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	549
BarI	GAAGNNNNNNTAC	2 cut(s)	3424, 3456
BbsI	GAAGAC	1 cut(s)	1949
Bbv12I	GWGCWC	6 cut(s)	78, 549, 965, 2154, 2171, 2240
BbvCI	CCTCAGC	1 cut(s)	3111
BceAI	ACGGC	2 cut(s)	2612, 3782
BcgI	CGANNNNNNTGC	2 cut(s)	3274, 3308
BciT130I	CCWGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
BciVI	GTATCC	1 cut(s)	778
BcoDI	GTCTC	5 cut(s)	497, 1450, 3107, 3599, 3630
BcuI	ACTAGT	1 cut(s)	2570
BfmI	CTRYAG	3 cut(s)	225, 3219, 3683
BfuAI	ACCTGC	2 cut(s)	679, 1013
BfuI	GTATCC	1 cut(s)	778
BglII	AGATCT	3 cut(s)	1198, 1667, 2276
BmcAI	AGTACT	1 cut(s)	3455
Bme1390I	CCNGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
Bme18I	GGWCC	3 cut(s)	3361, 3437, 3856
BmeT110I	CYCGRG	1 cut(s)	1266
BmgBI	CACGTC	1 cut(s)	1851
BmgT120I	GGNCC	5 cut(s)	181, 2184, 3361, 3437, 3856
BmiI	GGNNCC	7 cut(s)	349, 557, 837, 1027, 1474, 2670, 3376
BmrFI	CCNGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
BmrI	ACTGGG	2 cut(s)	210, 605
BmtI	GCTAGC	1 cut(s)	2604
BmuI	ACTGGG	2 cut(s)	210, 605
BoxI	GACNNNNGTC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	1949
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpmI	CTGGAG	4 cut(s)	227, 987, 2265, 2655
Bpu10I	CCTNAGC	2 cut(s)	3111, 3182
BpuEI	CTTGAG	2 cut(s)	535, 1407
BsaAI	YACGTR	2 cut(s)	1097, 3266
BsaBI	GATNNNNATC	1 cut(s)	2082
BsaI	GGTCTC	1 cut(s)	3107
BsaJI	CCNNGG	7 cut(s)	474, 498, 839, 3054, 3120, 3582, 3749
BsaWI	WCCGGW	1 cut(s)	2977
BsaXI	ACNNNNNCTCC	4 cut(s)	2263, 2293, 3746, 3776
Bse118I	RCCGGY	1 cut(s)	2977
Bse3DI	GCAATG	3 cut(s)	1017, 2095, 3176
Bse8I	GATNNNNATC	1 cut(s)	2082
BseBI	CCWGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
BseDI	CCNNGG	7 cut(s)	474, 498, 839, 3054, 3120, 3582, 3749
BseJI	GATNNNNATC	1 cut(s)	2082
BseMI	GCAATG	3 cut(s)	1017, 2095, 3176
BseMII	CTCAG	8 cut(s)	101, 792, 1110, 1152, 2655, 3102, 3464, 3830
BseRI	GAGGAG	2 cut(s)	818, 3550
BseSI	GKGCMC	1 cut(s)	3067
BseYI	CCCAGC	1 cut(s)	3558
BsgI	GTGCAG	3 cut(s)	1116, 1983, 2762
Bsh1236I	CGCG	1 cut(s)	3556
BshFI	GGCC	8 cut(s)	183, 450, 1752, 2186, 2710, 2758, 3525, 3797
BshNI	GGYRCC	1 cut(s)	1025
BshTI	ACCGGT	1 cut(s)	2977
BsiHKAI	GWGCWC	6 cut(s)	78, 549, 965, 2154, 2171, 2240
BsiHKCI	CYCGRG	1 cut(s)	1266
BsiSI	CCGG	2 cut(s)	1530, 2978
BslFI	GGGAC	1 cut(s)	1060
BsmAI	GTCTC	5 cut(s)	497, 1450, 3107, 3599, 3630
BsmBI	CGTCTC	1 cut(s)	3630
BsmFI	GGGAC	1 cut(s)	1060
BsmI	GAATGC	1 cut(s)	3410
BsnI	GGCC	8 cut(s)	183, 450, 1752, 2186, 2710, 2758, 3525, 3797
Bso31I	GGTCTC	1 cut(s)	3107
BsoBI	CYCGRG	1 cut(s)	1266
Bsp1286I	GDGCHC	7 cut(s)	78, 549, 965, 2154, 2171, 2240, 3067
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	7 cut(s)	184, 403, 827, 2422, 2635, 3001, 3126
BspANI	GGCC	8 cut(s)	183, 450, 1752, 2186, 2710, 2758, 3525, 3797
BspCNI	CTCAG	8 cut(s)	100, 793, 1111, 1153, 2656, 3103, 3463, 3829
BspFNI	CGCG	1 cut(s)	3556
BspHI	TCATGA	4 cut(s)	366, 453, 1171, 2460
BspLI	GGNNCC	7 cut(s)	349, 557, 837, 1027, 1474, 2670, 3376
BspMAI	CTGCAG	1 cut(s)	3223
BspMI	ACCTGC	2 cut(s)	679, 1013
BspOI	GCTAGC	1 cut(s)	2604
BspQI	GCTCTTC	1 cut(s)	2497
BspT107I	GGYRCC	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	3107
BsrBI	CCGCTC	1 cut(s)	2635
BsrDI	GCAATG	3 cut(s)	1017, 2095, 3176
BsrFI	RCCGGY	1 cut(s)	2977
BssAI	RCCGGY	1 cut(s)	2977
BssECI	CCNNGG	7 cut(s)	474, 498, 839, 3054, 3120, 3582, 3749
BssNAI	GTATAC	1 cut(s)	533
BssT1I	CCWWGG	3 cut(s)	474, 3582, 3749
Bst1107I	GTATAC	1 cut(s)	533
Bst2UI	CCWGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
Bst6I	CTCTTC	5 cut(s)	315, 1362, 2497, 3396, 3556
BstAPI	GCANNNNNTGC	2 cut(s)	2483, 3569
BstBAI	YACGTR	2 cut(s)	1097, 3266
BstC8I	GCNNGC	9 cut(s)	74, 1567, 1740, 2426, 2602, 2842, 3482, 3809, 3813
BstDSI	CCRYGG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	3556
BstHHI	GCGC	2 cut(s)	3410, 3558
BstMAI	GTCTC	5 cut(s)	497, 1450, 3107, 3599, 3630
BstNI	CCWGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
BstNSI	RCATGY	5 cut(s)	730, 1550, 1742, 1997, 2113
BstPAI	GACNNNNGTC	1 cut(s)	274
BstSCI	CCNGG	6 cut(s)	497, 838, 1189, 1867, 2758, 3054
BstSFI	CTRYAG	3 cut(s)	225, 3219, 3683
BstSLI	GKGCMC	1 cut(s)	3067
BstUI	CGCG	1 cut(s)	3556
BstV2I	GAAGAC	1 cut(s)	1949
BstX2I	RGATCY	7 cut(s)	347, 1115, 1198, 1483, 1667, 2068, 2276
BstXI	CCANNNNNNTGG	1 cut(s)	2706
BstYI	RGATCY	7 cut(s)	347, 1115, 1198, 1483, 1667, 2068, 2276
BstZ17I	GTATAC	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	778
BsuRI	GGCC	8 cut(s)	183, 450, 1752, 2186, 2710, 2758, 3525, 3797
BtgI	CCRYGG	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	1851
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	9 cut(s)	480, 711, 830, 963, 1036, 1354, 2371, 3028, 3145
BveI	ACCTGC	2 cut(s)	679, 1013
Cac8I	GCNNGC	9 cut(s)	74, 1567, 1740, 2426, 2602, 2842, 3482, 3809, 3813
CaiI	CAGNNNCTG	3 cut(s)	2801, 2996, 3569
CciI	TCATGA	4 cut(s)	366, 453, 1171, 2460
CfoI	GCGC	2 cut(s)	3410, 3558
Cfr10I	RCCGGY	1 cut(s)	2977
Cfr13I	GGNCC	5 cut(s)	181, 2184, 3361, 3437, 3856
Csp6I	GTAC	9 cut(s)	818, 871, 1094, 1455, 1673, 2519, 2774, 3432, 3454
CspAI	ACCGGT	1 cut(s)	2977
CspCI	CAANNNNNGTGG	2 cut(s)	1216, 1251
CviQI	GTAC	9 cut(s)	818, 871, 1094, 1455, 1673, 2519, 2774, 3432, 3454
DraI	TTTAAA	2 cut(s)	723, 2622
EaeI	YGGCCR	3 cut(s)	2708, 3523, 3795
Eam1104I	CTCTTC	5 cut(s)	315, 1362, 2497, 3396, 3556
EarI	CTCTTC	5 cut(s)	315, 1362, 2497, 3396, 3556
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	3 cut(s)	474, 3582, 3749
Eco147I	AGGCCT	2 cut(s)	1752, 2758
Eco24I	GRGCYC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	3107
Eco47I	GGWCC	3 cut(s)	3361, 3437, 3856
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	3760
Eco88I	CYCGRG	1 cut(s)	1266
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	2 cut(s)	3361, 3437
EcoRI	GAATTC	4 cut(s)	810, 3091, 3272, 3336
EcoRII	CCWGG	6 cut(s)	497, 838, 1189, 1867, 2758, 3054
EcoT14I	CCWWGG	3 cut(s)	474, 3582, 3749
EcoT22I	ATGCAT	2 cut(s)	1744, 2866
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	3 cut(s)	474, 3582, 3749
Esp3I	CGTCTC	1 cut(s)	3630
FalI	AAGNNNNNCTT	2 cut(s)	1460, 1492
FaqI	GGGAC	1 cut(s)	1060
FauI	CCCGC	2 cut(s)	834, 2628
FblI	GTMKAC	3 cut(s)	224, 532, 2542
FriOI	GRGCYC	1 cut(s)	549
GlaI	GCGC	2 cut(s)	3409, 3557
GsaI	CCCAGC	1 cut(s)	3562
GsuI	CTGGAG	4 cut(s)	227, 987, 2265, 2655
HaeIII	GGCC	8 cut(s)	183, 450, 1752, 2186, 2710, 2758, 3525, 3797
HapII	CCGG	2 cut(s)	1530, 2978
HhaI	GCGC	2 cut(s)	3410, 3558
Hin6I	GCGC	2 cut(s)	3408, 3556
HinP1I	GCGC	2 cut(s)	3408, 3556
HindIII	AAGCTT	1 cut(s)	2340
HpaII	CCGG	2 cut(s)	1530, 2978
HphI	GGTGA	9 cut(s)	23, 671, 1226, 1930, 2087, 2482, 2967, 3140, 3505
Hpy166II	GTNNAC	6 cut(s)	225, 533, 684, 1294, 2543, 2793
Hpy8I	GTNNAC	6 cut(s)	225, 533, 684, 1294, 2543, 2793
HpyCH4IV	ACGT	3 cut(s)	1096, 1850, 3265
HpySE526I	ACGT	3 cut(s)	1096, 1850, 3265
HspAI	GCGC	2 cut(s)	3408, 3556
LguI	GCTCTTC	1 cut(s)	2497
LmnI	GCTCC	6 cut(s)	286, 960, 1006, 2014, 2139, 2674
MaeII	ACGT	3 cut(s)	1096, 1850, 3265
MaeIII	GTNAC	7 cut(s)	29, 619, 625, 1156, 1396, 1912, 1918
MbiI	CCGCTC	1 cut(s)	2635
MflI	RGATCY	7 cut(s)	347, 1115, 1198, 1483, 1667, 2068, 2276
MhlI	GDGCHC	7 cut(s)	78, 549, 965, 2154, 2171, 2240, 3067
MlsI	TGGCCA	2 cut(s)	2710, 3525
MluNI	TGGCCA	2 cut(s)	2710, 3525
MlyI	GAGTC	4 cut(s)	301, 1915, 3538, 3819
MmeI	TCCRAC	7 cut(s)	221, 1694, 2421, 2620, 2806, 3124, 3606
Mox20I	TGGCCA	2 cut(s)	2710, 3525
Mph1103I	ATGCAT	2 cut(s)	1744, 2866
MroXI	GAANNNNTTC	2 cut(s)	1800, 3095
MscI	TGGCCA	2 cut(s)	2710, 3525
MslI	CAYNNNNRTG	4 cut(s)	59, 2402, 2704, 3033
Msp20I	TGGCCA	2 cut(s)	2710, 3525
MspA1I	CMGCKG	4 cut(s)	2424, 2675, 3224, 3566
MspI	CCGG	2 cut(s)	1530, 2978
MspR9I	CCNGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
Mva1269I	GAATGC	1 cut(s)	3410
MvaI	CCWGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
MvnI	CGCG	1 cut(s)	3556
NcoI	CCATGG	1 cut(s)	474
NheI	GCTAGC	1 cut(s)	2600
NlaIV	GGNNCC	7 cut(s)	349, 557, 837, 1027, 1474, 2670, 3376
NmeAIII	GCCGAG	1 cut(s)	3535
NmuCI	GTSAC	4 cut(s)	619, 1156, 1396, 1918
NsiI	ATGCAT	2 cut(s)	1744, 2866
NspI	RCATGY	5 cut(s)	730, 1550, 1742, 1997, 2113
OliI	CACNNNNGTG	2 cut(s)	2402, 2704
PaeI	GCATGC	1 cut(s)	1742
PaeR7I	CTCGAG	1 cut(s)	1266
PagI	TCATGA	4 cut(s)	366, 453, 1171, 2460
PaqCI	CACCTGC	2 cut(s)	679, 1013
PceI	AGGCCT	2 cut(s)	1752, 2758
PciI	ACATGT	2 cut(s)	1546, 2109
PciSI	GCTCTTC	1 cut(s)	2497
PctI	GAATGC	1 cut(s)	3410
PdmI	GAANNNNTTC	2 cut(s)	1800, 3095
PfeI	GAWTC	6 cut(s)	83, 884, 1872, 2264, 2394, 3196
PflMI	CCANNNNNTGG	1 cut(s)	3625
PinAI	ACCGGT	1 cut(s)	2977
PleI	GAGTC	4 cut(s)	301, 1915, 3537, 3819
PpsI	GAGTC	4 cut(s)	301, 1915, 3537, 3819
Ppu21I	YACGTR	2 cut(s)	1097, 3266
PpuMI	RGGWCCY	2 cut(s)	3361, 3437
PscI	ACATGT	2 cut(s)	1546, 2109
PshAI	GACNNNNGTC	1 cut(s)	274
PshBI	ATTAAT	1 cut(s)	2859
PsiI	TTATAA	1 cut(s)	3677
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	2 cut(s)	3361, 3437
Psp6I	CCWGG	6 cut(s)	497, 838, 1189, 1867, 2758, 3054
PspFI	CCCAGC	1 cut(s)	3558
PspGI	CCWGG	6 cut(s)	497, 838, 1189, 1867, 2758, 3054
PspN4I	GGNNCC	7 cut(s)	349, 557, 837, 1027, 1474, 2670, 3376
PspPI	GGNCC	5 cut(s)	181, 2184, 3361, 3437, 3856
PspPPI	RGGWCCY	2 cut(s)	3361, 3437
PspXI	VCTCGAGB	1 cut(s)	1266
PstI	CTGCAG	1 cut(s)	3223
PstNI	CAGNNNCTG	3 cut(s)	2801, 2996, 3569
PsuI	RGATCY	7 cut(s)	347, 1115, 1198, 1483, 1667, 2068, 2276
PvuII	CAGCTG	3 cut(s)	2675, 3224, 3566
RsaI	GTAC	9 cut(s)	819, 872, 1095, 1456, 1674, 2520, 2775, 3433, 3455
RsaNI	GTAC	9 cut(s)	818, 871, 1094, 1455, 1673, 2519, 2774, 3432, 3454
RseI	CAYNNNNRTG	4 cut(s)	59, 2402, 2704, 3033
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	2497
Sau96I	GGNCC	5 cut(s)	181, 2184, 3361, 3437, 3856
ScaI	AGTACT	1 cut(s)	3455
SchI	GAGTC	4 cut(s)	301, 1915, 3538, 3819
ScrFI	CCNGG	6 cut(s)	499, 840, 1191, 1869, 2760, 3056
SduI	GDGCHC	7 cut(s)	78, 549, 965, 2154, 2171, 2240, 3067
SfcI	CTRYAG	3 cut(s)	225, 3219, 3683
Sfr274I	CTCGAG	1 cut(s)	1266
SinI	GGWCC	3 cut(s)	3361, 3437, 3856
SlaI	CTCGAG	1 cut(s)	1266
SmiMI	CAYNNNNRTG	4 cut(s)	59, 2402, 2704, 3033
SmlI	CTYRAG	3 cut(s)	550, 1266, 1422
SmoI	CTYRAG	3 cut(s)	550, 1266, 1422
SpeI	ACTAGT	1 cut(s)	2570
SphI	GCATGC	1 cut(s)	1742
SseBI	AGGCCT	2 cut(s)	1752, 2758
SsiI	CCGC	7 cut(s)	184, 403, 827, 2422, 2635, 3001, 3126
SspI	AATATT	2 cut(s)	1231, 2410
SstI	GAGCTC	1 cut(s)	549
StuI	AGGCCT	2 cut(s)	1752, 2758
StyD4I	CCNGG	6 cut(s)	497, 838, 1189, 1867, 2758, 3054
StyI	CCWWGG	3 cut(s)	474, 3582, 3749
TaiI	ACGT	3 cut(s)	1099, 1853, 3268
TaqI	TCGA	7 cut(s)	1195, 1267, 1804, 2727, 3105, 3324, 3334
TaqII	GACCGA	1 cut(s)	3089
TatI	WGTACW	5 cut(s)	1672, 2518, 2773, 3431, 3453
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	6 cut(s)	83, 884, 1872, 2264, 2394, 3196
TscAI	CASTG	9 cut(s)	487, 711, 837, 970, 1036, 1361, 2371, 3028, 3145
TseFI	GTSAC	4 cut(s)	619, 1156, 1396, 1918
Tsp45I	GTSAC	4 cut(s)	619, 1156, 1396, 1918
TspGWI	ACGGA	7 cut(s)	143, 278, 282, 548, 550, 2738, 2796
TspRI	CASTG	9 cut(s)	487, 711, 837, 970, 1036, 1361, 2371, 3028, 3145
Van91I	CCANNNNNTGG	1 cut(s)	3625
VpaK11BI	GGWCC	3 cut(s)	3361, 3437, 3856
VspI	ATTAAT	1 cut(s)	2859
XapI	RAATTY	8 cut(s)	190, 462, 810, 1719, 3091, 3133, 3272, 3336
XceI	RCATGY	5 cut(s)	730, 1550, 1742, 1997, 2113
XcmI	CCANNNNNNNNNTGG	2 cut(s)	829, 3756
XhoI	CTCGAG	1 cut(s)	1266
XmiI	GTMKAC	3 cut(s)	224, 532, 2542
XmnI	GAANNNNTTC	2 cut(s)	1800, 3095
ZrmI	AGTACT	1 cut(s)	3455
Zsp2I	ATGCAT	2 cut(s)	1744, 2866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.