Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001783

Physical Location & Seq

Genomic Coordinates Forward (+)

11298473 .. 11298684

Gene Structure 212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG121100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 212 bp

ATGGAAAATGCTGGAAAAATGGAAGTACATGTAGAAGAAAAGGAAGACAGCAAAACCGATTACCTGGAAACCTCAGTTCCTGCGTCTAATGGGGTGGTGAATGACTTGCCAAAAGATGCAAGCTTCACAAAGAAACAGAAAGGGATGAGATCTGTACTGATTAAACAAGAGGAACGGAAAACAGGTGTTGTAAGTTGGAAAATTTTTCAGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

70

Amino Acids

7.93

Weight (kDa)

6.57

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30410 AT1G30420 AT1G30420
fragaria_vesca	FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_2g14981 FvH4_3g09710 FvH4_3g09720
malus_domestica	MD10G1255300.v1.1 MD10G1255500.v1.1
prunus_persica	Prupe.4G088600_v2.0.a1 Prupe.4G088600_v2.0.a1
pyrus_communis	pycom10g21050
rosa_chinensis	RchiOBHm_Chr3g0492011 RchiOBHm_Chr5g0015441 RchiOBHm_Chr5g0015451 RchiOBHm_Chr5g0015481 RchiOBHm_Chr5g0015491
rosa_laevigata	RLG00000032199 RLG00000032201 RLG00000032202
rosa_multiflora	Rmu_sc0019960.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061020 Rroxscaffold_1G00061040 Rroxscaffold_1G00061050 Rroxscaffold_6G00392640
rosa_rugosa	Rorug03G0251100 Rorug05G0027400 Rorug05G0027500 Rorug05G0027700
rosa_samantha	Rh3AG301500 Rh5AG121000 Rh5AG121100 Rh5CG130600 Rh5DG118900 Rh5DG119000
rosa_wichuraiana	Rw5G010450 Rw5G010470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	2 cut(s)	27, 156
AflIII	ACRYGT	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	65
BglII	AGATCT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	86
BssMI	GATC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	80
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	26, 155
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	1 cut(s)	123
CviKI_1	RGCY	1 cut(s)	123
CviQI	GTAC	2 cut(s)	26, 155
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	32
FaiI	YATR	1 cut(s)	30
FatI	CATG	1 cut(s)	28
FokI	GGATG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	121
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	149
LpnPI	CCDG	4 cut(s)	50, 77, 93, 168
LweI	GCATC	1 cut(s)	106
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	47, 56
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	82, 163
MseI	TTAA	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	32
NspI	RCATGY	1 cut(s)	32
PciI	ACATGT	1 cut(s)	28
PscI	ACATGT	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	27, 156
RsaNI	GTAC	2 cut(s)	26, 155
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	4 cut(s)	66, 74, 125, 187
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	9 cut(s)	24, 41, 76, 77, 92, 118, 132, 179, 195
Sse9I	AATT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	63
TasI	AATT	1 cut(s)	201
TatI	WGTACW	2 cut(s)	25, 154
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	190
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.