Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Reverse (-)

11180357 .. 11180973

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTCATGCCACCTGCTATGGTAATCCCCTTGTGAAGGGTATTCCAGAGGGAGATTGGTTCTTCTCGCAATGCTCTGGTTCTTCTGAGGCTTCGCGGGGTGATGAGTCTTTGAATTGCTGTCTTTGCCCCGGCAAAGGTGGGGCAATGAAACCGACTGGAGATGGGCGGTGGGCGCATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGACTGCTCCAAGGTTCCCAAGAGGAGGTGGAAAGAGAGGTGTTATGTTTGCAAGAGCGCAAGCGGGTGTGCTATTCAGTGTTCGGAGATCAAATGCCCTTTGGCGTTCCATGTGACTTGTGGGTTGAATGAAGATCTTTGTATAGAGTACAGGGAAGGAAGGAAGGGTGATATTGTAGCTGGGTTTTGTAGAACGCACACTGATCTGTGGGAAAAGCAACAAGAATCTGGGAAGTTCAAGATTGTGGCTAGAAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

168

Amino Acids

18.51

Weight (kDa)

7.87

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	39 - 138	1.7e-30	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	60 - 148	2.7e-18	PHD-like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	23
AccII	CGCG	2 cut(s)	97, 191
AciI	CCGC	3 cut(s)	97, 169, 306
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	37, 137, 267
AgsI	TTSAA	3 cut(s)	115, 370, 481
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
AoxI	GGCC	1 cut(s)	229
AspLEI	GCGC	4 cut(s)	178, 191, 193, 302
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	2 cut(s)	132, 224
AsuHPI	GGTGA	2 cut(s)	113, 422
AvaII	GGWCC	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	204
BccI	CCATC	1 cut(s)	158
BcnI	CCSGG	2 cut(s)	132, 224
BfaI	CTAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	132, 224
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	222, 258
BmrFI	CCNGG	2 cut(s)	132, 224
BpmI	CTGGAG	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	132, 224
BsaJI	CCNNGG	2 cut(s)	130, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 137, 267
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	77, 153
BseDI	CCNNGG	2 cut(s)	130, 252
BseLI	CCNNNNNNNGG	3 cut(s)	37, 137, 267
BseMI	GCAATG	2 cut(s)	77, 153
BseMII	CTCAG	2 cut(s)	78, 195
BseNI	ACTGG	1 cut(s)	163
BsePI	GCGCGC	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	97, 191
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	132, 224
BslI	CCNNNNNNNGG	3 cut(s)	37, 137, 267
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	330, 376, 445
BspACI	CCGC	3 cut(s)	97, 169, 306
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	79, 196
BspFNI	CGCG	2 cut(s)	97, 191
BspLI	GGNNCC	2 cut(s)	222, 258
BspMI	ACCTGC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	77, 153
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	130, 252
BssHII	GCGCGC	1 cut(s)	189
BssMI	GATC	3 cut(s)	330, 376, 445
BssT1I	CCWWGG	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	191, 304
BstDEI	CTNAG	2 cut(s)	87, 204
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstFNI	CGCG	2 cut(s)	97, 191
BstHHI	GCGC	4 cut(s)	178, 191, 193, 302
BstKTI	GATC	3 cut(s)	333, 379, 448
BstMBI	GATC	3 cut(s)	330, 376, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 175
BstSCI	CCNGG	2 cut(s)	130, 222
BstUI	CGCG	2 cut(s)	97, 191
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	326, 441
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	191, 304
CfoI	GCGC	4 cut(s)	178, 191, 193, 302
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	2 cut(s)	8, 353
CviJI	RGCY	4 cut(s)	92, 231, 422, 491
CviKI_1	RGCY	4 cut(s)	92, 231, 422, 491
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	87, 204
DpnI	GATC	3 cut(s)	332, 378, 447
DpnII	GATC	3 cut(s)	330, 376, 445
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	11, 356
FaiI	YATR	7 cut(s)	9, 21, 180, 198, 288, 354, 386
FatI	CATG	2 cut(s)	7, 352
FauI	CCCGC	2 cut(s)	90, 299
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	4 cut(s)	177, 190, 192, 301
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	132, 224
HhaI	GCGC	4 cut(s)	178, 191, 193, 302
Hin1II	CATG	2 cut(s)	11, 356
Hin6I	GCGC	4 cut(s)	176, 189, 191, 300
HinP1I	GCGC	4 cut(s)	176, 189, 191, 300
HinfI	GANTC	2 cut(s)	107, 467
HpaII	CCGG	2 cut(s)	132, 224
HphI	GGTGA	2 cut(s)	113, 422
Hpy188I	TCNGA	2 cut(s)	88, 328
Hpy188III	TCNNGA	3 cut(s)	47, 203, 481
HpyAV	CCTTC	5 cut(s)	31, 221, 392, 396, 400
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 175
HpyF3I	CTNAG	2 cut(s)	87, 204
Hsp92II	CATG	2 cut(s)	11, 356
HspAI	GCGC	4 cut(s)	176, 189, 191, 300
Kzo9I	GATC	3 cut(s)	330, 376, 445
LmnI	GCTCC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	332, 378, 447
MboI	GATC	3 cut(s)	330, 376, 445
MboII	GAAGA	3 cut(s)	55, 75, 386
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	43, 82, 199, 229, 258, 261, 273
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	132, 224
MspR9I	CCNGG	2 cut(s)	132, 224
MvnI	CGCG	2 cut(s)	97, 191
MwoI	GCNNNNNNNGC	2 cut(s)	126, 175
NciI	CCSGG	2 cut(s)	132, 224
NdeII	GATC	3 cut(s)	330, 376, 445
NlaIII	CATG	2 cut(s)	11, 356
NlaIV	GGNNCC	2 cut(s)	222, 258
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	23
PauI	GCGCGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	222, 258
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	376
PteI	GCGCGC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	330, 376, 445
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	132, 224
SetI	ASST	7 cut(s)	17, 142, 210, 258, 272, 284, 424
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	3 cut(s)	97, 169, 306
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	130, 222
StyI	CCWWGG	1 cut(s)	252
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	326, 448
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	164, 387
TspRI	CASTG	2 cut(s)	326, 448
VpaK11BI	GGWCC	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 359
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.