pycom03g19870

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0004804
Physical Location & Seq
Forward (+)
20502674 .. 20503852
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19870.1

Sequence Viewer

Length: 1074 bp
ATGAATCCCCCCACCAAATCAATTTTCTCTGCCCAAAAACCAGACCCACAAATGGATCAGAGATTTCATGGCCTGCCTCCTCTCAAGAGATTCAGACTCATGCAGCAACAGCAGCAGAAGGATGCCCTTTTGTCCCCGTTGCGCCTTCCAGCAAAGAAGCGAAAGGCGTCGAGAGACCAACTCGTTCTCCCTGACCCCACCGCCTCCGCTGCGGCCGGCTCCACCTATTCCCTGCCTGCCAAGAAAAGGGTTTGGGCGCTTCAGCCCGATTTGTTCACTGAAGAGCCACGTTTGACATTGGACCTTAATGTCGAGTACAAGCCGCCCTTTGGGTCGGAGCTAGAAGAAGAGCCAAAATCGGAGGAAGACAAGGGTAAAGCTGAAAATGGTTGCAATGAAGATATTGAAAATACCCAAGAGAAGAAAAGCCAAGAAATCGCAGGGGATGGAGAGTGCAGCGAAGAAGAAGAAGAAGAAGATGATGATGATGGGATTGTTTGTGCTGTTTGTCAGAGCACAGATGGAGATCCATCAGATCCAATTGTCTTCTGTGATGGGTGTAATCTGACGGTTCATGCCTCCTGCTATGGCAATCCACTCGCAAAGGGTATTCCGGAAGGAGATTGGTTCTGCGCCCAATGCGCGTTTTCTGCTGTGCATTCCCAATCCAATGAGTCCTGTTCTTGCTGCTTATGTCCTGTCAAAGGAGGGGCAATGAAGCCTACCGGAGACGGCAGGTGGGCACACATTGTGTGTGCGCTTTATGTCCCAGAGGTGTTCTTCAAGGACCCTGAAGGCCGGGAGGGGATTGATTGCTCCAAGGTTCCGAAAAGGCGGTGGAAGGAGAGATGCTATGTTTGTGAGAGTTCAAGGGGGTGTGCTATTCAGTGCTCCGAGCTTAAGTGCCCTCTGGCATTTCATGTGAGTTGTGGCTTGAATGAGGATCTTTGTATTGAGTACAAGGAAGGAAGGAATAAGGGAGCTATTGTGGCTGGGTTTTGTAAAAAGCACTCAGATCTGTGGATAAAGCAAGAACAAACTGGGAAGTACAAGATTGTCGCTAGAGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

358

Amino Acids

39.61

Weight (kDa)

5.14

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 167 - 214 4.7e-11 PHD-finger
PHD_2 PF13831 179 - 215 9.9e-11 PHD-finger
zf-HC5HC2H_2 PF13832 228 - 337 1e-28 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 249 - 338 9.2e-18 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 726
AasI GACNNNNNNGTC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 726
AccII CGCG 1 cut(s) 644
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 5 cut(s) 201, 207, 212, 323, 835
AclWI GGATC 4 cut(s) 63, 521, 530, 951
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 3 cut(s) 245, 300, 813
AcyI GRCGYC 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 751
AfaI GTAC 3 cut(s) 317, 959, 1049
AfiI CCNNNNNNNGG 4 cut(s) 52, 246, 329, 704
AflII CTTAAG 1 cut(s) 899
AgsI TTSAA 4 cut(s) 407, 784, 870, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 340, 380, 898, 983
AluI AGCT 4 cut(s) 340, 380, 898, 983
Alw21I GWGCWC 2 cut(s) 518, 893
Alw26I GTCTC 2 cut(s) 168, 723
AlwI GGATC 4 cut(s) 63, 521, 530, 951
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 3 cut(s) 70, 213, 796
ApeKI GCWGC 5 cut(s) 103, 112, 209, 456, 687
AspLEI GCGC 5 cut(s) 144, 259, 635, 644, 760
AspS9I GGNCC 2 cut(s) 301, 787
AsuC2I CCSGG 1 cut(s) 800
AvaII GGWCC 2 cut(s) 301, 787
BaeGI GKGCMC 2 cut(s) 745, 908
BbsI GAAGAC 2 cut(s) 372, 538
Bbv12I GWGCWC 2 cut(s) 518, 893
BbvI GCAGC 5 cut(s) 115, 124, 196, 468, 674
BccI CCATC 5 cut(s) 440, 482, 515, 538, 548
BceAI ACGGC 1 cut(s) 748
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BcnI CCSGG 1 cut(s) 800
BcoDI GTCTC 2 cut(s) 168, 723
BfaI CTAG 2 cut(s) 341, 1062
BfoI RGCGCY 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 899
BfuAI ACCTGC 1 cut(s) 726
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 7 cut(s) 104, 113, 210, 213, 323, 457, 688
BlsI GCNGC 7 cut(s) 105, 114, 211, 214, 324, 458, 689
Bme1390I CCNGG 1 cut(s) 800
Bme18I GGWCC 2 cut(s) 301, 787
BmgT120I GGNCC 2 cut(s) 301, 787
BmiI GGNNCC 3 cut(s) 220, 789, 825
BmrFI CCNGG 1 cut(s) 800
BmrI ACTGGG 1 cut(s) 1050
BmsI GCATC 2 cut(s) 112, 839
BmuI ACTGGG 1 cut(s) 1050
BpiI GAAGAC 2 cut(s) 372, 538
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 819
BsaWI WCCGGW 2 cut(s) 613, 725
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 972, 1002
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 246, 329, 704
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 1045
Bse3DI GCAATG 2 cut(s) 400, 720
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 613
BseDI CCNNGG 1 cut(s) 819
BseGI GGATG 2 cut(s) 127, 451
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 4 cut(s) 52, 246, 329, 704
BseMI GCAATG 2 cut(s) 400, 720
BseMII CTCAG 1 cut(s) 1026
BseNI ACTGG 1 cut(s) 1045
BseRI GAGGAG 1 cut(s) 69
BseSI GKGCMC 2 cut(s) 745, 908
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 5 cut(s) 115, 124, 196, 468, 674
BseYI CCCAGC 1 cut(s) 992
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 3 cut(s) 72, 215, 798
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 518, 893
BsiSI CCGG 4 cut(s) 216, 614, 726, 799
BslFI GGGAC 2 cut(s) 118, 752
BslI CCNNNNNNNGG 4 cut(s) 52, 246, 329, 704
BsmAI GTCTC 2 cut(s) 168, 723
BsmBI CGTCTC 1 cut(s) 723
BsmFI GGGAC 2 cut(s) 118, 752
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 3 cut(s) 72, 215, 798
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 4 cut(s) 518, 745, 893, 908
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 5 cut(s) 55, 526, 535, 943, 1015
BspACI CCGC 5 cut(s) 201, 207, 212, 323, 835
BspANI GGCC 3 cut(s) 72, 215, 798
BspCNI CTCAG 1 cut(s) 1025
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 220, 789, 825
BspMI ACCTGC 1 cut(s) 726
BspPI GGATC 4 cut(s) 63, 521, 530, 951
BspQI GCTCTTC 2 cut(s) 276, 342
BspTI CTTAAG 1 cut(s) 899
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 400, 720
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 1045
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 819
BssMI GATC 5 cut(s) 55, 526, 535, 943, 1015
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 819
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 2 cut(s) 276, 342
BstACI GRCGYC 1 cut(s) 167
BstAFI CTTAAG 1 cut(s) 899
BstC8I GCNNGC 3 cut(s) 74, 217, 237
BstDEI CTNAG 1 cut(s) 1012
BstENI CCTNNNNNAGG 1 cut(s) 702
BstF5I GGATG 2 cut(s) 127, 451
BstFNI CGCG 1 cut(s) 644
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 5 cut(s) 144, 259, 635, 644, 760
BstKTI GATC 5 cut(s) 58, 529, 538, 946, 1018
BstMAI GTCTC 2 cut(s) 168, 723
BstMBI GATC 5 cut(s) 55, 526, 535, 943, 1015
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 7 cut(s) 109, 112, 209, 639, 641, 650, 989
BstSCI CCNGG 1 cut(s) 798
BstSLI GKGCMC 2 cut(s) 745, 908
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 5 cut(s) 115, 124, 196, 468, 674
BstV2I GAAGAC 2 cut(s) 372, 538
BstX2I RGATCY 4 cut(s) 526, 535, 943, 1015
BstYI RGATCY 4 cut(s) 526, 535, 943, 1015
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 3 cut(s) 72, 215, 798
BtsCI GGATG 2 cut(s) 127, 451
BtsIMutI CAGTG 2 cut(s) 276, 893
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 3 cut(s) 74, 217, 237
CfoI GCGC 5 cut(s) 144, 259, 635, 644, 760
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 301, 787
CseI GACGC 1 cut(s) 156
Csp6I GTAC 3 cut(s) 316, 958, 1048
CviAII CATG 4 cut(s) 68, 100, 575, 920
CviQI GTAC 3 cut(s) 316, 958, 1048
DdeI CTNAG 1 cut(s) 1012
DpnI GATC 5 cut(s) 57, 528, 537, 945, 1017
DpnII GATC 5 cut(s) 55, 526, 535, 943, 1015
DraIII CACNNNGTG 1 cut(s) 751
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 276, 342
EarI CTCTTC 2 cut(s) 276, 342
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 301, 787
Eco52I CGGCCG 1 cut(s) 213
Eco57I CTGAAG 3 cut(s) 245, 300, 813
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 4 cut(s) 71, 103, 578, 923
FaiI YATR 8 cut(s) 69, 101, 576, 588, 694, 765, 855, 921
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 2 cut(s) 118, 752
FatI CATG 4 cut(s) 67, 99, 574, 919
Fnu4HI GCNGC 7 cut(s) 104, 113, 210, 213, 323, 457, 688
FokI GGATG 2 cut(s) 134, 458
Fsp4HI GCNGC 7 cut(s) 104, 113, 210, 213, 323, 457, 688
FspBI CTAG 2 cut(s) 341, 1062
GlaI GCGC 5 cut(s) 143, 258, 634, 643, 759
GluI GCNGC 7 cut(s) 104, 113, 210, 213, 323, 457, 688
GsaI CCCAGC 1 cut(s) 996
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 3 cut(s) 72, 215, 798
HapII CCGG 4 cut(s) 216, 614, 726, 799
HgaI GACGC 1 cut(s) 156
HhaI GCGC 5 cut(s) 144, 259, 635, 644, 760
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 4 cut(s) 71, 103, 578, 923
Hin6I GCGC 5 cut(s) 142, 257, 633, 642, 758
HinP1I GCGC 5 cut(s) 142, 257, 633, 642, 758
HinfI GANTC 4 cut(s) 4, 90, 96, 674
HpaII CCGG 4 cut(s) 216, 614, 726, 799
Hpy166II GTNNAC 1 cut(s) 276
Hpy188III TCNNGA 3 cut(s) 85, 171, 614
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 7 cut(s) 112, 155, 611, 788, 835, 959, 963
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 103, 393, 456, 658
HpyF10VI GCNNNNNNNGC 7 cut(s) 109, 112, 209, 639, 641, 650, 989
HpyF3I CTNAG 1 cut(s) 1012
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 4 cut(s) 71, 103, 578, 923
HspAI GCGC 5 cut(s) 142, 257, 633, 642, 758
Kpn2I TCCGGA 1 cut(s) 613
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 55, 526, 535, 943, 1015
LguI GCTCTTC 2 cut(s) 276, 342
LmnI GCTCC 5 cut(s) 224, 337, 821, 896, 980
Lsp1109I GCAGC 5 cut(s) 115, 124, 196, 468, 674
LweI GCATC 2 cut(s) 112, 839
MaeI CTAG 2 cut(s) 341, 1062
MaeII ACGT 1 cut(s) 289
MalI GATC 5 cut(s) 57, 528, 537, 945, 1017
MboI GATC 5 cut(s) 55, 526, 535, 943, 1015
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 4 cut(s) 526, 535, 943, 1015
MhlI GDGCHC 4 cut(s) 518, 745, 893, 908
MluCI AATT 2 cut(s) 21, 540
MlyI GAGTC 2 cut(s) 90, 683
MmeI TCCRAC 1 cut(s) 315
MroI TCCGGA 1 cut(s) 613
MroNI GCCGGC 1 cut(s) 215
MseI TTAA 2 cut(s) 306, 900
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 899
MspI CCGG 4 cut(s) 216, 614, 726, 799
MspR9I CCNGG 1 cut(s) 800
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 658
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 7 cut(s) 109, 112, 209, 639, 641, 650, 989
NaeI GCCGGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 800
NdeII GATC 5 cut(s) 55, 526, 535, 943, 1015
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 4 cut(s) 71, 103, 578, 923
NlaIV GGNNCC 3 cut(s) 220, 789, 825
PaqCI CACCTGC 1 cut(s) 726
PciSI GCTCTTC 2 cut(s) 276, 342
PctI GAATGC 1 cut(s) 658
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 4, 90
PkrI GCNGC 7 cut(s) 105, 114, 211, 214, 324, 458, 689
PleI GAGTC 2 cut(s) 90, 682
PpsI GAGTC 2 cut(s) 90, 682
PpuMI RGGWCCY 1 cut(s) 787
Psp5II RGGWCCY 1 cut(s) 787
PspFI CCCAGC 1 cut(s) 992
PspN4I GGNNCC 3 cut(s) 220, 789, 825
PspPI GGNCC 2 cut(s) 301, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 4 cut(s) 526, 535, 943, 1015
RsaI GTAC 3 cut(s) 317, 959, 1049
RsaNI GTAC 3 cut(s) 316, 958, 1048
SapI GCTCTTC 2 cut(s) 276, 342
SaqAI TTAA 2 cut(s) 306, 900
SatI GCNGC 7 cut(s) 104, 113, 210, 213, 323, 457, 688
Sau3AI GATC 5 cut(s) 55, 526, 535, 943, 1015
Sau96I GGNCC 2 cut(s) 301, 787
SchI GAGTC 2 cut(s) 90, 683
ScrFI CCNGG 1 cut(s) 800
SduI GDGCHC 4 cut(s) 518, 745, 893, 908
SfaNI GCATC 2 cut(s) 112, 839
SinI GGWCC 2 cut(s) 301, 787
SmlI CTYRAG 2 cut(s) 83, 899
SmoI CTYRAG 2 cut(s) 83, 899
Sse9I AATT 2 cut(s) 21, 540
SsiI CCGC 5 cut(s) 201, 207, 212, 323, 835
SspMI CTAG 2 cut(s) 341, 1062
StyD4I CCNGG 1 cut(s) 798
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 170, 312
TasI AATT 2 cut(s) 21, 540
TatI WGTACW 3 cut(s) 315, 957, 1047
TauI GCSGC 2 cut(s) 215, 325
TfiI GAWTC 2 cut(s) 4, 90
Tru1I TTAA 2 cut(s) 306, 900
Tru9I TTAA 2 cut(s) 306, 900
TscAI CASTG 2 cut(s) 283, 893
TseI GCWGC 5 cut(s) 103, 112, 209, 456, 687
TspDTI ATGAA 6 cut(s) 17, 56, 411, 563, 731, 908
TspRI CASTG 2 cut(s) 283, 893
Vha464I CTTAAG 1 cut(s) 899
VpaK11BI GGWCC 2 cut(s) 301, 787
XagI CCTNNNNNAGG 1 cut(s) 702
XspI CTAG 2 cut(s) 341, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.