Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012347.1

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Forward (+)

18350 .. 20142

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012347.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggttcattctacctgctatggcaatccccttgtaaagggtattccagagggggattggttctgctcgcaatgctccggttcttctgaggcttcacagtccaatgagtctttctcttgctgtctgtgtccttgcaaaggtggagcaatgaagccaagtggagatggccggtgggcacatattgtgtgtgcgctttatgttcctgaggtgttctttaaggaccgggaaggccgagaggggattgattgctcaaaggttccgaagaggaggtggaaagagaggtgttatgtttgcaagagtgcaagtgggtgtgctattcagtgctcggaaatcaaatgtcctttagcgttccaggtgacttgtggtttcaacgaggatctttgcatagagtacagggaaggaaggaagggtgattttatagctgggttttgcagaacccacactgatttgtgggaagagcgacaagaatctgggaagttcaagatctgcgtgctatctgctatgcacgcggcgtttgtctaccgcgacccaaaaaaaactctctcgagtaaaactcattttactgcggctgcaggctatatcacatggcaagcacgattagataacgggaatgtcgaacactatcagcctggcatcatcccatcagaatccccgaaatcaaccccatttccgcagattccgatcacaacctctcttccacgggatacgagctgccgaaaagcagaagaatcgccggagaaccccaccgtccccacgctttctaattttgattcttcttcctcatccgacgaatggatgatccaagaccaccaggaggtcgacgatgaaggtaggagccgaaaggtactggtttgcctccgtttcgtcgccggaaagagaagttgcggaggggtcgtcttctcgggttgccgggtcgccaaaacgggtcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

310

Amino Acids

34.36

Weight (kDa)

7.98

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccI	GTMKAC	2 cut(s)	519, 819
AccII	CGCG	2 cut(s)	509, 525
AciI	CCGC	5 cut(s)	509, 523, 566, 671, 885
AclWI	GGATC	2 cut(s)	384, 793
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	2 cut(s)	392, 846
AfiI	CCNNNNNNNGG	4 cut(s)	37, 137, 792, 814
AgsI	TTSAA	2 cut(s)	370, 481
AjnI	CCWGG	3 cut(s)	351, 628, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	2 cut(s)	422, 711
AluI	AGCT	2 cut(s)	422, 711
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	384, 793
Ama87I	CYCGRG	2 cut(s)	544, 901
AoxI	GGCC	2 cut(s)	166, 229
ApeKI	GCWGC	2 cut(s)	569, 711
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	2 cut(s)	224, 911
AsuHPI	GGTGA	2 cut(s)	367, 422
AvaI	CYCGRG	2 cut(s)	544, 901
AvaII	GGWCC	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	889
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	556, 698
BccI	CCATC	2 cut(s)	158, 649
BcgI	CGANNNNNNTGC	2 cut(s)	711, 745
BciT130I	CCWGG	3 cut(s)	353, 630, 812
BciVI	GTATCC	1 cut(s)	697
BcnI	CCSGG	2 cut(s)	224, 911
BfmI	CTRYAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	4 cut(s)	510, 567, 570, 712
BlsI	GCNGC	4 cut(s)	511, 568, 571, 713
Bme1390I	CCNGG	5 cut(s)	224, 353, 630, 812, 911
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	2 cut(s)	544, 901
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	258, 836
BmrFI	CCNGG	5 cut(s)	224, 353, 630, 812, 911
BmsI	GCATC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	889
BplI	GAGNNNNNCTC	4 cut(s)	98, 130, 538, 570
BpuMI	CCSGG	2 cut(s)	224, 911
BsaBI	GATNNNNATC	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	698
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 137, 792, 814
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	852
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	77, 153
Bse8I	GATNNNNATC	1 cut(s)	680
BseBI	CCWGG	3 cut(s)	353, 630, 812
BseDI	CCNNGG	1 cut(s)	698
BseGI	GGATG	3 cut(s)	636, 782, 801
BseJI	GATNNNNATC	1 cut(s)	680
BseLI	CCNNNNNNNGG	4 cut(s)	37, 137, 792, 814
BseMI	GCAATG	2 cut(s)	77, 153
BseMII	CTCAG	2 cut(s)	78, 195
BseNI	ACTGG	1 cut(s)	852
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	556, 698
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	509, 525
BshFI	GGCC	2 cut(s)	168, 231
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	2 cut(s)	544, 901
BsiSI	CCGG	6 cut(s)	78, 169, 223, 734, 870, 910
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	4 cut(s)	37, 137, 792, 814
BsmFI	GGGAC	1 cut(s)	734
BsnI	GGCC	2 cut(s)	168, 231
BsoBI	CYCGRG	2 cut(s)	544, 901
Bsp1286I	GDGCHC	2 cut(s)	178, 326
Bsp143I	GATC	4 cut(s)	376, 483, 681, 798
BspACI	CCGC	5 cut(s)	509, 523, 566, 671, 885
BspANI	GGCC	2 cut(s)	168, 231
BspCNI	CTCAG	2 cut(s)	79, 196
BspFNI	CGCG	2 cut(s)	509, 525
BspLI	GGNNCC	2 cut(s)	258, 836
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	2 cut(s)	384, 793
BspQI	GCTCTTC	1 cut(s)	450
BsrDI	GCAATG	2 cut(s)	77, 153
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	852
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	698
BssMI	GATC	4 cut(s)	376, 483, 681, 798
Bst2UI	CCWGG	3 cut(s)	353, 630, 812
Bst4CI	ACNGT	2 cut(s)	99, 748
Bst6I	CTCTTC	3 cut(s)	257, 450, 699
BstC8I	GCNNGC	5 cut(s)	68, 491, 507, 574, 591
BstDEI	CTNAG	2 cut(s)	87, 204
BstDSI	CCRYGG	1 cut(s)	698
BstENI	CCTNNNNNAGG	2 cut(s)	35, 135
BstF5I	GGATG	3 cut(s)	636, 782, 801
BstFNI	CGCG	2 cut(s)	509, 525
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	379, 486, 684, 801
BstMBI	GATC	4 cut(s)	376, 483, 681, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 506
BstNI	CCWGG	3 cut(s)	353, 630, 812
BstSCI	CCNGG	5 cut(s)	222, 351, 628, 810, 909
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	2 cut(s)	509, 525
BstV1I	GCAGC	2 cut(s)	556, 698
BstV2I	GAAGAC	1 cut(s)	889
BstX2I	RGATCY	2 cut(s)	376, 483
BstYI	RGATCY	2 cut(s)	376, 483
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	168, 231
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	3 cut(s)	636, 782, 801
BtsIMutI	CAGTG	2 cut(s)	326, 441
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	5 cut(s)	68, 491, 507, 574, 591
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	391, 845
CviAII	CATG	1 cut(s)	585
CviQI	GTAC	2 cut(s)	391, 845
DdeI	CTNAG	2 cut(s)	87, 204
DpnI	GATC	4 cut(s)	378, 485, 683, 800
DpnII	GATC	4 cut(s)	376, 483, 681, 798
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	257, 450, 699
EarI	CTCTTC	3 cut(s)	257, 450, 699
Eco47I	GGWCC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	2 cut(s)	544, 901
EcoNI	CCTNNNNNAGG	2 cut(s)	35, 135
EcoRII	CCWGG	3 cut(s)	351, 628, 810
FaeI	CATG	1 cut(s)	588
FaiI	YATR	9 cut(s)	21, 180, 198, 288, 386, 419, 503, 579, 586
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	1 cut(s)	584
FblI	GTMKAC	2 cut(s)	519, 819
Fnu4HI	GCNGC	4 cut(s)	510, 567, 570, 712
FokI	GGATG	3 cut(s)	623, 769, 808
Fsp4HI	GCNGC	4 cut(s)	510, 567, 570, 712
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	510, 567, 570, 712
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	168, 231
HapII	CCGG	6 cut(s)	78, 169, 223, 734, 870, 910
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	588
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HinfI	GANTC	6 cut(s)	107, 467, 647, 676, 728, 770
HpaII	CCGG	6 cut(s)	78, 169, 223, 734, 870, 910
HphI	GGTGA	2 cut(s)	367, 422
Hpy166II	GTNNAC	2 cut(s)	520, 820
Hpy188I	TCNGA	6 cut(s)	88, 261, 328, 646, 681, 787
Hpy188III	TCNNGA	4 cut(s)	47, 203, 481, 544
Hpy8I	GTNNAC	2 cut(s)	520, 820
Hpy99I	CGWCG	3 cut(s)	791, 824, 869
HpyAV	CCTTC	5 cut(s)	221, 392, 396, 400, 821
HpyCH4III	ACNGT	2 cut(s)	99, 748
HpyCH4V	TGCA	7 cut(s)	135, 294, 302, 384, 432, 505, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 506
HpyF3I	CTNAG	2 cut(s)	87, 204
Hsp92II	CATG	1 cut(s)	588
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	376, 483, 681, 798
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	3 cut(s)	80, 143, 834
Lsp1109I	GCAGC	2 cut(s)	556, 698
LweI	GCATC	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	378, 485, 683, 800
MboI	GATC	4 cut(s)	376, 483, 681, 798
MboII	GAAGA	8 cut(s)	75, 274, 467, 686, 737, 765, 768, 889
MflI	RGATCY	2 cut(s)	376, 483
MhlI	GDGCHC	2 cut(s)	178, 326
MluCI	AATT	1 cut(s)	763
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	810
MseI	TTAA	1 cut(s)	216
MspI	CCGG	6 cut(s)	78, 169, 223, 734, 870, 910
MspR9I	CCNGG	5 cut(s)	224, 353, 630, 812, 911
MvaI	CCWGG	3 cut(s)	353, 630, 812
MvnI	CGCG	2 cut(s)	509, 525
MwoI	GCNNNNNNNGC	2 cut(s)	72, 506
NciI	CCSGG	2 cut(s)	224, 911
NdeII	GATC	4 cut(s)	376, 483, 681, 798
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	2 cut(s)	258, 836
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	5 cut(s)	467, 647, 676, 728, 770
PkrI	GCNGC	4 cut(s)	511, 568, 571, 713
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	3 cut(s)	351, 628, 810
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	351, 628, 810
PspN4I	GGNNCC	2 cut(s)	258, 836
PspPI	GGNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	376, 483
RsaI	GTAC	2 cut(s)	392, 846
RsaNI	GTAC	2 cut(s)	391, 845
SalI	GTCGAC	1 cut(s)	818
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	510, 567, 570, 712
Sau3AI	GATC	4 cut(s)	376, 483, 681, 798
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	224, 353, 630, 812, 911
SduI	GDGCHC	2 cut(s)	178, 326
SfaNI	GCATC	1 cut(s)	642
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	544
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	1 cut(s)	763
SsiI	CCGC	5 cut(s)	509, 523, 566, 671, 885
StyD4I	CCNGG	5 cut(s)	222, 351, 628, 810, 909
TaaI	ACNGT	2 cut(s)	99, 748
TaqI	TCGA	3 cut(s)	545, 615, 819
TasI	AATT	1 cut(s)	763
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	512, 569
TfiI	GAWTC	5 cut(s)	467, 647, 676, 728, 770
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	326, 448
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	569, 711
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	164, 840
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	2 cut(s)	326, 448
VpaK11BI	GGWCC	1 cut(s)	220
XagI	CCTNNNNNAGG	2 cut(s)	35, 135
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 359
XhoI	CTCGAG	1 cut(s)	544
XmiI	GTMKAC	2 cut(s)	519, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.