RLG00000033149

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004804
Physical Location & Seq
Reverse (-)
23787027 .. 23788466
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033149

Sequence Viewer

Length: 990 bp
ATGGTTATGGATCCCCACTTCCATGGCCTACCTCCTCTCAAAAGATTCAGACTCATGCAGCAGCAACAGAGCCAGCACCGCCACGACGTCGTTTTGCCCATTCTTCCGGCGAAGAAGAGAAAGGAGACTAGGGAAAAACCGATTCTTCCTGATCCAACTCCCGCCGCCTTCGCCGTCTCCACCTATTCCTTGCCGGCGAAGAAGAGGGTGTGGGCGCTTCCGCAGGATTTAGTCCCCGAGAAGCCGGTTTCGGAGTTGGATTTGAATCTTGAGTACAAGCCGGATCTCGGGGAAGAGTCGGACGCTGCGGTGGAGAGACTTGAAGAATGCAGGGAAGGTGTTTGTGAAAATGCCTCAGAGAAAAGGCATGAAGATTCAGGCGGCGAGGAAGAGTGTGAGGATGAGGATGGGATTGTTTGTGCTGTTTGTAAGAGCACAGATGGAGATCCATCGGATCCGATTGTGTTCTGTGATGGGTGTGATCTGATGGTTCATTCTACCTGCTATGGCAATCCCCTTGTGAAGGGTATTCCAGAGGGGGATTGGTTCTGCTCGCAATGCTCCGGTTCTTCTGAGGCTTCACAGTCCAATGAGTCTTTCTCTTGCTGTCTGTGTCCTGGCAAAGGTGGAGCAATGAAGCCAACTGGAGATGGCCGGTGGGCACATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGGTTCCCAAGAGGAGGTGGAAAGAGAGGTGTTATGTCTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTCGGAGATCAAATGCCCTTTGGCGTTCCATGTGACTTGTGGGTTGAACGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGGTGATATTGTAGCTGGGTTTTGCAGAACCCACACTGATTTGTGGGAAAAGCAACAAGAATCTGGGAAGTTCAAGATTGTGGCTAGAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

330

Amino Acids

36.63

Weight (kDa)

5.36

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 140 - 187 1.3e-10 PHD-finger
PHD_2 PF13831 152 - 187 5.3e-09 PHD-finger
zf-HC5HC2H_2 PF13832 201 - 299 1.3e-29 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 222 - 310 1.2e-17 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 509
AccII CGCG 1 cut(s) 677
AciI CCGC 6 cut(s) 79, 162, 165, 221, 308, 381
AclWI GGATC 8 cut(s) 5, 18, 146, 291, 440, 449, 462, 870
AcoI YGGCCR 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 275, 878
AfiI CCNNNNNNNGG 4 cut(s) 287, 523, 623, 753
AgsI TTSAA 4 cut(s) 265, 323, 856, 967
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 1 cut(s) 908
AluI AGCT 1 cut(s) 908
Alw21I GWGCWC 2 cut(s) 437, 812
Alw26I GTCTC 3 cut(s) 119, 181, 310
AlwI GGATC 8 cut(s) 5, 18, 146, 291, 440, 449, 462, 870
Ama87I CYCGRG 2 cut(s) 236, 287
AoxI GGCC 3 cut(s) 25, 652, 715
ApeKI GCWGC 3 cut(s) 58, 61, 305
AspLEI GCGC 3 cut(s) 217, 677, 679
AspS9I GGNCC 1 cut(s) 706
AsuC2I CCSGG 1 cut(s) 710
AsuHPI GGTGA 1 cut(s) 908
AvaI CYCGRG 2 cut(s) 236, 287
AvaII GGWCC 1 cut(s) 706
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 664
BamHI GGATCC 2 cut(s) 10, 454
Bbv12I GWGCWC 2 cut(s) 437, 812
BbvI GCAGC 3 cut(s) 70, 73, 292
BccI CCATC 6 cut(s) 401, 434, 457, 467, 481, 644
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 1 cut(s) 710
BcoDI GTCTC 3 cut(s) 119, 181, 310
BfaI CTAG 2 cut(s) 129, 978
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 5 cut(s) 59, 62, 165, 306, 382
BlsI GCNGC 5 cut(s) 60, 63, 166, 307, 383
Bme1390I CCNGG 2 cut(s) 618, 710
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 2 cut(s) 236, 287
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 4 cut(s) 12, 456, 708, 744
BmrFI CCNGG 2 cut(s) 618, 710
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 710
BsaBI GATNNNNATC 2 cut(s) 264, 444
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 523, 623, 753
Bse118I RCCGGY 3 cut(s) 193, 244, 654
Bse1I ACTGG 1 cut(s) 649
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 2 cut(s) 563, 639
Bse8I GATNNNNATC 2 cut(s) 264, 444
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 406, 412
BseJI GATNNNNATC 2 cut(s) 264, 444
BseLI CCNNNNNNNGG 4 cut(s) 287, 523, 623, 753
BseMI GCAATG 2 cut(s) 563, 639
BseMII CTCAG 3 cut(s) 369, 564, 681
BseNI ACTGG 1 cut(s) 649
BsePI GCGCGC 1 cut(s) 675
BseRI GAGGAG 2 cut(s) 24, 766
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 3 cut(s) 70, 73, 292
BseYI CCCAGC 1 cut(s) 908
Bsh1236I CGCG 1 cut(s) 677
BshFI GGCC 3 cut(s) 27, 654, 717
BsiHKAI GWGCWC 2 cut(s) 437, 812
BsiHKCI CYCGRG 2 cut(s) 236, 287
BsiSI CCGG 7 cut(s) 107, 194, 245, 281, 564, 655, 710
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 4 cut(s) 287, 523, 623, 753
BsmAI GTCTC 3 cut(s) 119, 181, 310
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 3 cut(s) 27, 654, 717
BsoBI CYCGRG 2 cut(s) 236, 287
Bsp1286I GDGCHC 3 cut(s) 437, 664, 812
Bsp143I GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 6 cut(s) 79, 162, 165, 221, 308, 381
BspANI GGCC 3 cut(s) 27, 654, 717
BspCNI CTCAG 3 cut(s) 368, 565, 682
BspFNI CGCG 1 cut(s) 677
BspLI GGNNCC 4 cut(s) 12, 456, 708, 744
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 8 cut(s) 5, 18, 146, 291, 440, 449, 462, 870
BsrDI GCAATG 2 cut(s) 563, 639
BsrFI RCCGGY 3 cut(s) 193, 244, 654
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 3 cut(s) 193, 244, 654
BssECI CCNNGG 1 cut(s) 22
BssHII GCGCGC 1 cut(s) 675
BssMI GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 4 cut(s) 110, 197, 288, 384
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 4 cut(s) 74, 195, 554, 677
BstDEI CTNAG 3 cut(s) 355, 573, 690
BstDSI CCRYGG 1 cut(s) 22
BstENI CCTNNNNNAGG 2 cut(s) 521, 621
BstF5I GGATG 2 cut(s) 406, 412
BstFNI CGCG 1 cut(s) 677
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 3 cut(s) 217, 677, 679
BstKTI GATC 8 cut(s) 13, 154, 286, 448, 457, 484, 819, 865
BstMAI GTCTC 3 cut(s) 119, 181, 310
BstMBI GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
BstMWI GCNNNNNNNGC 3 cut(s) 78, 170, 558
BstNI CCWGG 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 616, 708
BstSLI GKGCMC 1 cut(s) 664
BstUI CGCG 1 cut(s) 677
BstV1I GCAGC 3 cut(s) 70, 73, 292
BstX2I RGATCY 5 cut(s) 10, 283, 445, 454, 862
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 5 cut(s) 10, 283, 445, 454, 862
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 3 cut(s) 27, 654, 717
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 406, 412
BtsIMutI CAGTG 2 cut(s) 812, 927
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 74, 195, 554, 677
CfoI GCGC 3 cut(s) 217, 677, 679
Cfr10I RCCGGY 3 cut(s) 193, 244, 654
Cfr13I GGNCC 1 cut(s) 706
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 274, 877
CviAII CATG 4 cut(s) 23, 55, 368, 839
CviQI GTAC 2 cut(s) 274, 877
DdeI CTNAG 3 cut(s) 355, 573, 690
DpnI GATC 8 cut(s) 12, 153, 285, 447, 456, 483, 818, 864
DpnII GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 4 cut(s) 110, 197, 288, 384
EarI CTCTTC 4 cut(s) 110, 197, 288, 384
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 706
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 236, 287
EcoNI CCTNNNNNAGG 2 cut(s) 521, 621
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 4 cut(s) 26, 58, 371, 842
FaqI GGGAC 1 cut(s) 218
FatI CATG 4 cut(s) 22, 54, 367, 838
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 5 cut(s) 59, 62, 165, 306, 382
FokI GGATG 2 cut(s) 413, 419
Fsp4HI GCNGC 5 cut(s) 59, 62, 165, 306, 382
FspBI CTAG 2 cut(s) 129, 978
GlaI GCGC 3 cut(s) 216, 676, 678
GluI GCNGC 5 cut(s) 59, 62, 165, 306, 382
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 3 cut(s) 27, 654, 717
HapII CCGG 7 cut(s) 107, 194, 245, 281, 564, 655, 710
HgaI GACGC 1 cut(s) 311
HhaI GCGC 3 cut(s) 217, 677, 679
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 26, 58, 371, 842
Hin6I GCGC 3 cut(s) 215, 675, 677
HinP1I GCGC 3 cut(s) 215, 675, 677
HinfI GANTC 8 cut(s) 45, 51, 142, 265, 296, 374, 593, 953
HpaII CCGG 7 cut(s) 107, 194, 245, 281, 564, 655, 710
HphI GGTGA 1 cut(s) 908
Hpy188I TCNGA 9 cut(s) 50, 253, 301, 358, 454, 459, 486, 574, 814
Hpy188III TCNNGA 5 cut(s) 149, 269, 533, 689, 967
Hpy99I CGWCG 2 cut(s) 89, 92
HpyAV CCTTC 7 cut(s) 178, 329, 517, 707, 878, 882, 886
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 6 cut(s) 58, 330, 780, 788, 870, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 170, 558
HpyF3I CTNAG 3 cut(s) 355, 573, 690
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 26, 58, 371, 842
HspAI GCGC 3 cut(s) 215, 675, 677
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
LmnI GCTCC 2 cut(s) 566, 629
Lsp1109I GCAGC 3 cut(s) 70, 73, 292
MaeI CTAG 2 cut(s) 129, 978
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 841
MalI GATC 8 cut(s) 12, 153, 285, 447, 456, 483, 818, 864
MboI GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
MflI RGATCY 5 cut(s) 10, 283, 445, 454, 862
MhlI GDGCHC 3 cut(s) 437, 664, 812
MlyI GAGTC 3 cut(s) 45, 305, 602
MmeI TCCRAC 3 cut(s) 179, 237, 279
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 7 cut(s) 107, 194, 245, 281, 564, 655, 710
MspR9I CCNGG 2 cut(s) 618, 710
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 618
MvnI CGCG 1 cut(s) 677
MwoI GCNNNNNNNGC 3 cut(s) 78, 170, 558
NaeI GCCGGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 710
NcoI CCATGG 1 cut(s) 22
NdeII GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
NgoMIV GCCGGC 1 cut(s) 193
NlaIII CATG 4 cut(s) 26, 58, 371, 842
NlaIV GGNNCC 4 cut(s) 12, 456, 708, 744
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 1 cut(s) 841
PauI GCGCGC 1 cut(s) 675
PctI GAATGC 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 195
PfeI GAWTC 5 cut(s) 45, 142, 265, 374, 953
PkrI GCNGC 5 cut(s) 60, 63, 166, 307, 383
PleI GAGTC 3 cut(s) 45, 304, 601
PpsI GAGTC 3 cut(s) 45, 304, 601
PpuMI RGGWCCY 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 12, 456, 708, 744
PspPI GGNCC 1 cut(s) 706
PspPPI RGGWCCY 1 cut(s) 706
PsuI RGATCY 5 cut(s) 10, 283, 445, 454, 862
PteI GCGCGC 1 cut(s) 675
RsaI GTAC 2 cut(s) 275, 878
RsaNI GTAC 2 cut(s) 274, 877
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 5 cut(s) 59, 62, 165, 306, 382
Sau3AI GATC 8 cut(s) 10, 151, 283, 445, 454, 481, 816, 862
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 3 cut(s) 45, 305, 602
ScrFI CCNGG 2 cut(s) 618, 710
SduI GDGCHC 3 cut(s) 437, 664, 812
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SsiI CCGC 6 cut(s) 79, 162, 165, 221, 308, 381
SspMI CTAG 2 cut(s) 129, 978
StyD4I CCNGG 2 cut(s) 616, 708
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 90
TatI WGTACW 2 cut(s) 273, 876
TauI GCSGC 2 cut(s) 167, 384
TfiI GAWTC 5 cut(s) 45, 142, 265, 374, 953
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 2 cut(s) 812, 934
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 3 cut(s) 58, 61, 305
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 3 cut(s) 384, 482, 650
TspRI CASTG 2 cut(s) 812, 934
VpaK11BI GGWCC 1 cut(s) 706
XagI CCTNNNNNAGG 2 cut(s) 521, 621
XcmI CCANNNNNNNNNTGG 2 cut(s) 540, 845
XspI CTAG 2 cut(s) 129, 978
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.