Rh5BG203600

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004804
Physical Location & Seq
Reverse (-)
22978756 .. 23045736
66981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG203600.1

Sequence Viewer

Length: 942 bp
ATGCAGCAGCAACAGAGCCAGCACCGCCACGACGTCGTTTTGCCCGTTCTTCCGGCGAAGAAGAGAAAGGAGACGAGGGAAAAACCCATTCTCCCTGACCCAACTCCCGCCGCCTTCGCCGTCTCCACCTATTCCTTGCCGGCGAAGAAGAGGGTGTGGGCGCTTCCGCCGGATTTAGTCCCCGAGAAGCCGGTTTCGGAGTTGGATTTGAATCTTGAGTACAAGCCGGATCTCGGGGAAGAGTCTGAGGCTGCAGTGGGGAAGCTTGAAGAATGCACGGAAGGTGTTTGTGAAAATGCCTCAGAGAAGAGCCCGGAAGATTTGCGCGGCGAGGAAGAGTGTGAGGATGAGGATGAGGATGGGATTGTTTGTGCAGTTTGTAAGAGTACAGATGGAGATCCTTCGGATCCGATTGTGTTCTGTGATGGGTGTGATCTGATGGTTCATGCCACCTGCTATGGTAATCCCCTTGTAAAGGGTATTCCGGAGGGGGATTGGTTCTGTTCGCAATGCTCCGGTTCTTCTGAGGCCTCACAGTCCAATGAGTCTTTCTCTTGCTGTCTGTGTCCTGGCAAAGGTGGAGCAATGAAGCCAACTGGAGATGGCCGGTGGGCACATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCCAAGGTTCCCAAGAGGAGGTGGAAAGAGAGGTGTTATGTCTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTCGGAGATCAAATGCCCTTTGGCATTCCATGTGACTTGTGGGTTGAATGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGGTGATATTGTTGCTGGGTTTTGCAGAACCCACACTGATTTGTGGGAAAAGCAACAAGAATCTGGGAAGTTCAAGATCGTGGCTAGAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

313

Amino Acids

34.52

Weight (kDa)

4.96

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 124 - 171 8.5e-11 PHD-finger
PHD_2 PF13831 136 - 171 1.1e-09 PHD-finger
zf-HC5HC2H_2 PF13832 185 - 283 1.2e-29 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 206 - 294 1.1e-17 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 461
AatII GACGTC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 461
AccII CGCG 2 cut(s) 327, 629
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 5 cut(s) 25, 108, 111, 167, 327
AclWI GGATC 5 cut(s) 237, 392, 401, 414, 822
AcoI YGGCCR 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 221, 388, 830
AfiI CCNNNNNNNGG 4 cut(s) 233, 475, 575, 705
AgsI TTSAA 4 cut(s) 211, 269, 808, 919
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 2 cut(s) 65, 127
AlwI GGATC 5 cut(s) 237, 392, 401, 414, 822
Ama87I CYCGRG 2 cut(s) 182, 233
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 3 cut(s) 528, 604, 667
ApeKI GCWGC 3 cut(s) 4, 7, 251
AspLEI GCGC 4 cut(s) 163, 327, 629, 631
AspS9I GGNCC 1 cut(s) 658
AsuC2I CCSGG 2 cut(s) 314, 662
AsuHPI GGTGA 1 cut(s) 860
AvaI CYCGRG 2 cut(s) 182, 233
AvaII GGWCC 1 cut(s) 658
AxyI CCTNAGG 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 616
BamHI GGATCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 3 cut(s) 16, 19, 238
BccI CCATC 5 cut(s) 353, 386, 419, 433, 596
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 570
BcnI CCSGG 2 cut(s) 314, 662
BcoDI GTCTC 2 cut(s) 65, 127
BfaI CTAG 1 cut(s) 930
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 5 cut(s) 5, 8, 111, 252, 328
BlsI GCNGC 5 cut(s) 6, 9, 112, 253, 329
Bme1390I CCNGG 3 cut(s) 314, 570, 662
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 2 cut(s) 182, 233
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 3 cut(s) 408, 660, 696
BmrFI CCNGG 3 cut(s) 314, 570, 662
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpmI CTGGAG 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 2 cut(s) 314, 662
BsaBI GATNNNNATC 2 cut(s) 210, 396
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 690
BsaWI WCCGGW 2 cut(s) 484, 515
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 475, 575, 705
Bse118I RCCGGY 3 cut(s) 139, 190, 606
Bse1I ACTGG 1 cut(s) 601
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 2 cut(s) 515, 591
Bse8I GATNNNNATC 2 cut(s) 210, 396
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 3 cut(s) 352, 358, 364
BseJI GATNNNNATC 2 cut(s) 210, 396
BseLI CCNNNNNNNGG 4 cut(s) 233, 475, 575, 705
BseMI GCAATG 2 cut(s) 515, 591
BseMII CTCAG 4 cut(s) 237, 315, 516, 633
BseNI ACTGG 1 cut(s) 601
BsePI GCGCGC 1 cut(s) 627
BseRI GAGGAG 1 cut(s) 718
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 3 cut(s) 16, 19, 238
BseYI CCCAGC 1 cut(s) 860
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 2 cut(s) 327, 629
BshFI GGCC 3 cut(s) 530, 606, 669
BsiHKAI GWGCWC 1 cut(s) 764
BsiHKCI CYCGRG 2 cut(s) 182, 233
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 4 cut(s) 233, 475, 575, 705
BsmAI GTCTC 2 cut(s) 65, 127
BsmBI CGTCTC 2 cut(s) 65, 127
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 2 cut(s) 278, 785
BsnI GGCC 3 cut(s) 530, 606, 669
BsoBI CYCGRG 2 cut(s) 182, 233
Bsp1286I GDGCHC 3 cut(s) 314, 616, 764
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
BspACI CCGC 5 cut(s) 25, 108, 111, 167, 327
BspANI GGCC 3 cut(s) 530, 606, 669
BspCNI CTCAG 4 cut(s) 238, 314, 517, 634
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 2 cut(s) 327, 629
BspLI GGNNCC 3 cut(s) 408, 660, 696
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 5 cut(s) 237, 392, 401, 414, 822
BspQI GCTCTTC 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 515, 591
BsrFI RCCGGY 3 cut(s) 139, 190, 606
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 3 cut(s) 139, 190, 606
BssECI CCNNGG 1 cut(s) 690
BssHII GCGCGC 1 cut(s) 627
BssMI GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 1 cut(s) 537
Bst6I CTCTTC 5 cut(s) 56, 143, 234, 302, 330
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 20, 141, 629
BstDEI CTNAG 4 cut(s) 246, 301, 525, 642
BstENI CCTNNNNNAGG 2 cut(s) 473, 573
BstF5I GGATG 3 cut(s) 352, 358, 364
BstFNI CGCG 2 cut(s) 327, 629
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 4 cut(s) 163, 327, 629, 631
BstKTI GATC 7 cut(s) 232, 400, 409, 436, 771, 817, 924
BstMAI GTCTC 2 cut(s) 65, 127
BstMBI GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
BstMWI GCNNNNNNNGC 2 cut(s) 24, 116
BstNI CCWGG 1 cut(s) 570
BstSCI CCNGG 3 cut(s) 312, 568, 660
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 2 cut(s) 327, 629
BstV1I GCAGC 3 cut(s) 16, 19, 238
BstX2I RGATCY 4 cut(s) 229, 397, 406, 814
BstYI RGATCY 4 cut(s) 229, 397, 406, 814
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 3 cut(s) 530, 606, 669
BtsCI GGATG 3 cut(s) 352, 358, 364
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 261, 764, 879
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 3 cut(s) 20, 141, 629
CfoI GCGC 4 cut(s) 163, 327, 629, 631
Cfr10I RCCGGY 3 cut(s) 139, 190, 606
Cfr13I GGNCC 1 cut(s) 658
Csp6I GTAC 3 cut(s) 220, 387, 829
CviAII CATG 2 cut(s) 446, 791
CviQI GTAC 3 cut(s) 220, 387, 829
DdeI CTNAG 4 cut(s) 246, 301, 525, 642
DpnI GATC 7 cut(s) 231, 399, 408, 435, 770, 816, 923
DpnII GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 5 cut(s) 56, 143, 234, 302, 330
EarI CTCTTC 5 cut(s) 56, 143, 234, 302, 330
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 690
Eco147I AGGCCT 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 658
Eco81I CCTNAGG 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 182, 233
EcoNI CCTNNNNNAGG 2 cut(s) 473, 573
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 690
Esp3I CGTCTC 2 cut(s) 65, 127
FaeI CATG 2 cut(s) 449, 794
FaiI YATR 7 cut(s) 447, 459, 618, 636, 726, 792, 824
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 445, 790
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 5, 8, 111, 252, 328
FokI GGATG 3 cut(s) 359, 365, 371
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 5 cut(s) 5, 8, 111, 252, 328
FspBI CTAG 1 cut(s) 930
GlaI GCGC 4 cut(s) 162, 326, 628, 630
GluI GCNGC 5 cut(s) 5, 8, 111, 252, 328
GsaI CCCAGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 3 cut(s) 530, 606, 669
HhaI GCGC 4 cut(s) 163, 327, 629, 631
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 449, 794
Hin6I GCGC 4 cut(s) 161, 325, 627, 629
HinP1I GCGC 4 cut(s) 161, 325, 627, 629
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 4 cut(s) 211, 242, 545, 905
HphI GGTGA 1 cut(s) 860
Hpy188I TCNGA 8 cut(s) 199, 247, 304, 406, 411, 438, 526, 766
Hpy188III TCNNGA 4 cut(s) 215, 485, 641, 919
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 7 cut(s) 124, 275, 411, 659, 830, 834, 838
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 8 cut(s) 4, 254, 276, 374, 732, 740, 822, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 116
HpyF3I CTNAG 4 cut(s) 246, 301, 525, 642
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 449, 794
HspAI GCGC 4 cut(s) 161, 325, 627, 629
Kpn2I TCCGGA 1 cut(s) 484
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 3 cut(s) 518, 581, 692
Lsp1109I GCAGC 3 cut(s) 16, 19, 238
MaeI CTAG 1 cut(s) 930
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 793
MalI GATC 7 cut(s) 231, 399, 408, 435, 770, 816, 923
MboI GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
MflI RGATCY 4 cut(s) 229, 397, 406, 814
MhlI GDGCHC 3 cut(s) 314, 616, 764
MlyI GAGTC 2 cut(s) 251, 554
MmeI TCCRAC 1 cut(s) 183
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 139
MseI TTAA 1 cut(s) 654
MspR9I CCNGG 3 cut(s) 314, 570, 662
Mva1269I GAATGC 2 cut(s) 278, 785
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 2 cut(s) 327, 629
MwoI GCNNNNNNNGC 2 cut(s) 24, 116
NaeI GCCGGC 1 cut(s) 141
NciI CCSGG 2 cut(s) 314, 662
NdeII GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 2 cut(s) 449, 794
NlaIV GGNNCC 3 cut(s) 408, 660, 696
NmeAIII GCCGAG 1 cut(s) 695
NmuCI GTSAC 1 cut(s) 793
PaqCI CACCTGC 1 cut(s) 461
PauI GCGCGC 1 cut(s) 627
PceI AGGCCT 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 2 cut(s) 278, 785
PdiI GCCGGC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 211, 905
PkrI GCNGC 5 cut(s) 6, 9, 112, 253, 329
PleI GAGTC 2 cut(s) 250, 553
PpsI GAGTC 2 cut(s) 250, 553
PpuMI RGGWCCY 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 408, 660, 696
PspPI GGNCC 1 cut(s) 658
PspPPI RGGWCCY 1 cut(s) 658
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 4 cut(s) 229, 397, 406, 814
PteI GCGCGC 1 cut(s) 627
RsaI GTAC 3 cut(s) 221, 388, 830
RsaNI GTAC 3 cut(s) 220, 387, 829
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 5 cut(s) 5, 8, 111, 252, 328
Sau3AI GATC 7 cut(s) 229, 397, 406, 433, 768, 814, 921
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 2 cut(s) 251, 554
ScrFI CCNGG 3 cut(s) 314, 570, 662
SduI GDGCHC 3 cut(s) 314, 616, 764
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 658
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SseBI AGGCCT 1 cut(s) 530
SsiI CCGC 5 cut(s) 25, 108, 111, 167, 327
SspMI CTAG 1 cut(s) 930
StuI AGGCCT 1 cut(s) 530
StyD4I CCNGG 3 cut(s) 312, 568, 660
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 537
TaiI ACGT 1 cut(s) 36
TatI WGTACW 3 cut(s) 219, 386, 828
TauI GCSGC 2 cut(s) 113, 330
TfiI GAWTC 2 cut(s) 211, 905
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 3 cut(s) 261, 764, 886
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 3 cut(s) 4, 7, 251
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 2 cut(s) 434, 602
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 3 cut(s) 261, 764, 886
VpaK11BI GGWCC 1 cut(s) 658
XagI CCTNNNNNAGG 2 cut(s) 473, 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XspI CTAG 1 cut(s) 930
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.