Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Reverse (-)

22840375 .. 22841962

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTGGTTTTGGGCAATGACTTGGTATATAAACACATTAGGAGAGGGTGTAGGCGCTTCCGCGGGGTCTAGTCCCCGATTGAGTACAAGCCGCATCTCGGGGAAGAAGAAAAGCCCGGAAGATTCGGACCGCGAGGAAGAGTGTGAGGATGAAGATGGGATTGTTTGTGCTGTTTGTAAGAGTACGGATGGAGACCCGTCGGATCCGATTGTGTTCTGTGATGGGTGTGATCTGATGGTTCATTCTACCTGCTATGGCAATCCCTTTGTAAAGGGTATTCCAGAGGGGGATTGGTTCTGCTCGCAATGCCCTGGTTCTTCTGAGGCTTCACAGTCCGATGAGTCTTTCTCTTGCTGTCTGTGTCCTGGCAAAGGTGGAGCAATAAGGCCAACTGGAGATGGCCGGTGGGCACATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGGTTCCCAAGGGGAGGTGGAAAGAGAGGTGTTATGTGTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTTGGAAATCAAATGTCCTTTAGCGTTCCATGTGACTTGTGGTTTCAACGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

216

Amino Acids

23.57

Weight (kDa)

4.8

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	56 - 103	2.1e-10	PHD-finger
PHD_2	PF13831	68 - 103	2.9e-09	PHD-finger
zf-HC5HC2H_2	PF13832	117 - 211	1.5e-28	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	138 - 211	2.4e-15	PHD-like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AccII	CGCG	3 cut(s)	62, 132, 425
AciI	CCGC	4 cut(s)	60, 62, 91, 130
AclWI	GGATC	3 cut(s)	197, 210, 618
AcoI	YGGCCR	1 cut(s)	400
AfaI	GTAC	3 cut(s)	85, 184, 626
AfiI	CCNNNNNNNGG	3 cut(s)	97, 371, 501
AgsI	TTSAA	1 cut(s)	604
AjnI	CCWGG	2 cut(s)	310, 364
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	3 cut(s)	197, 210, 618
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	3 cut(s)	386, 400, 463
AspLEI	GCGC	3 cut(s)	56, 425, 427
AspS9I	GGNCC	2 cut(s)	127, 454
AsuC2I	CCSGG	2 cut(s)	116, 458
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	127, 454
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	202
BccI	CCATC	5 cut(s)	149, 182, 215, 229, 392
BciT130I	CCWGG	2 cut(s)	312, 366
BcnI	CCSGG	2 cut(s)	116, 458
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	4 cut(s)	116, 312, 366, 458
Bme18I	GGWCC	2 cut(s)	127, 454
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	127, 454
BmiI	GGNNCC	3 cut(s)	204, 456, 492
BmrFI	CCNGG	4 cut(s)	116, 312, 366, 458
BmsI	GCATC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	2 cut(s)	116, 458
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	60, 310, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 371, 501
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	2 cut(s)	21, 311
BseBI	CCWGG	2 cut(s)	312, 366
BseDI	CCNNGG	3 cut(s)	60, 310, 495
BseGI	GGATG	2 cut(s)	154, 193
BseLI	CCNNNNNNNGG	3 cut(s)	97, 371, 501
BseMI	GCAATG	2 cut(s)	21, 311
BseMII	CTCAG	2 cut(s)	312, 429
BseNI	ACTGG	1 cut(s)	397
BsePI	GCGCGC	1 cut(s)	423
BseSI	GKGCMC	1 cut(s)	412
Bsh1236I	CGCG	3 cut(s)	62, 132, 425
BshFI	GGCC	3 cut(s)	388, 402, 465
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	116, 403, 458
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	97, 371, 501
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	388, 402, 465
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	202, 229, 610
BspACI	CCGC	4 cut(s)	60, 62, 91, 130
BspANI	GGCC	3 cut(s)	388, 402, 465
BspCNI	CTCAG	2 cut(s)	313, 430
BspFNI	CGCG	3 cut(s)	62, 132, 425
BspLI	GGNNCC	3 cut(s)	204, 456, 492
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	197, 210, 618
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	2 cut(s)	21, 311
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	60, 310, 495
BssHII	GCGCGC	1 cut(s)	423
BssMI	GATC	3 cut(s)	202, 229, 610
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	312, 366
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	302, 425
BstDEI	CTNAG	2 cut(s)	321, 438
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	154, 193
BstFNI	CGCG	3 cut(s)	62, 132, 425
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	3 cut(s)	56, 425, 427
BstKTI	GATC	3 cut(s)	205, 232, 613
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	202, 229, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	2 cut(s)	312, 366
BstSCI	CCNGG	4 cut(s)	114, 310, 364, 456
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	3 cut(s)	62, 132, 425
BstX2I	RGATCY	2 cut(s)	202, 610
BstYI	RGATCY	2 cut(s)	202, 610
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	388, 402, 465
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	154, 193
BtsIMutI	CAGTG	1 cut(s)	560
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	302, 425
CfoI	GCGC	3 cut(s)	56, 425, 427
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	127, 454
Cfr42I	CCGCGG	1 cut(s)	63
CpoI	CGGWCCG	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	84, 183, 625
CspI	CGGWCCG	1 cut(s)	127
CviAII	CATG	1 cut(s)	587
CviJI	RGCY	6 cut(s)	90, 114, 326, 388, 402, 465
CviKI_1	RGCY	6 cut(s)	90, 114, 326, 388, 402, 465
CviQI	GTAC	3 cut(s)	84, 183, 625
DdeI	CTNAG	2 cut(s)	321, 438
DpnI	GATC	3 cut(s)	204, 231, 612
DpnII	GATC	3 cut(s)	202, 229, 610
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	127, 454
Eco81I	CCTNAGG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	310, 364
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	1 cut(s)	590
FaiI	YATR	8 cut(s)	27, 29, 255, 414, 432, 522, 588, 620
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	586
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	2 cut(s)	161, 200
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	3 cut(s)	55, 424, 426
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	388, 402, 465
HapII	CCGG	3 cut(s)	116, 403, 458
HhaI	GCGC	3 cut(s)	56, 425, 427
Hin1II	CATG	1 cut(s)	590
Hin6I	GCGC	3 cut(s)	54, 423, 425
HinP1I	GCGC	3 cut(s)	54, 423, 425
HinfI	GANTC	2 cut(s)	122, 341
HpaII	CCGG	3 cut(s)	116, 403, 458
Hpy188I	TCNGA	6 cut(s)	127, 202, 207, 234, 322, 337
Hpy188III	TCNNGA	2 cut(s)	281, 437
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	5 cut(s)	455, 626, 630, 634, 638
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	528, 536, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	321, 438
Hsp92II	CATG	1 cut(s)	590
HspAI	GCGC	3 cut(s)	54, 423, 425
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	202, 229, 610
LmnI	GCTCC	1 cut(s)	377
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	3 cut(s)	204, 231, 612
MboI	GATC	3 cut(s)	202, 229, 610
MboII	GAAGA	6 cut(s)	115, 118, 131, 149, 164, 309
MflI	RGATCY	2 cut(s)	202, 610
MhlI	GDGCHC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	116, 403, 458
MspR9I	CCNGG	4 cut(s)	116, 312, 366, 458
MvaI	CCWGG	2 cut(s)	312, 366
MvnI	CGCG	3 cut(s)	62, 132, 425
MwoI	GCNNNNNNNGC	1 cut(s)	306
NciI	CCSGG	2 cut(s)	116, 458
NdeII	GATC	3 cut(s)	202, 229, 610
NlaIII	CATG	1 cut(s)	590
NlaIV	GGNNCC	3 cut(s)	204, 456, 492
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	589
PauI	GCGCGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	310, 364
PspGI	CCWGG	2 cut(s)	310, 364
PspN4I	GGNNCC	3 cut(s)	204, 456, 492
PspPI	GGNCC	2 cut(s)	127, 454
PspPPI	RGGWCCY	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	202, 610
PteI	GCGCGC	1 cut(s)	423
RsaI	GTAC	3 cut(s)	85, 184, 626
RsaNI	GTAC	3 cut(s)	84, 183, 625
Rsr2I	CGGWCCG	1 cut(s)	127
RsrII	CGGWCCG	1 cut(s)	127
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	202, 229, 610
Sau96I	GGNCC	2 cut(s)	127, 454
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	116, 312, 366, 458
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	6 cut(s)	251, 376, 444, 492, 506, 518
SfaNI	GCATC	1 cut(s)	102
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	2 cut(s)	127, 454
SsiI	CCGC	4 cut(s)	60, 62, 91, 130
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	114, 310, 364, 456
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	333
TatI	WGTACW	2 cut(s)	83, 624
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	560
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	165, 230
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	127, 454
XagI	CCTNNNNNAGG	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	2 cut(s)	288, 593
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.