Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Reverse (-)

8894918 .. 8896708

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G155300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATCAGAGATTCCATGGCCTGCCTCCTCTCAAGAGATTCAGACTTATGCAAAAACAAGAGCAGCAGGAAGATACCCTTTTAGCCTCGTCGCGCCTTCCAGCGAAGAAAAGAAAAGAGGCATGGCACCAGCCCCTTCTCCCTGACCCATTTGCCGCCACCACTGCTGTCTCCACCTATTCATTGCCTGCCAAGAAAAGGGTTTGGGCCTTTCAGCCAGATTTAATCTCCGAGGACCCGCTTTCGACATTGGACCTTAATGTCGAGTACAAGGTGCCTTTTGGTGCAGAGTCAGAAGAAGCAGTGGTGGAGAAAGAAGAAGAGGAAGAAGAAGAGAAGGGTATTATTCATGAAAATGATTGCAGTGAAGCTACTGAAAATACCCAGGAAGAGAAAGGCCAAGAAATTACTGGTGATGAAGATGACAATGAAGAAGAAGAAGATGGGATTGTTTGTGCTATATGTCAGAGCACAGATGGAGATGCATCAGATCCAATCGTGTTCTGTGATGGCTGTGATCTAATGGTTCATGCCACCTGCTATGGCAATCCCCTTGTTAAGGGTATTCCAGAGGGCGATTGGTTCTGCTCCCAATGCTCGCTTTCTTCTGCGTCTTCTCAATCCACTGAGTCCTCTTCTTGCTGCCTGTGTCCTATCAAGGGAGGAGCAATGAAGCACACCAGAGATGGCAGGTGGGCACACATCGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTCAAAGACCCCGAAGGCCGAGAGGGGATTGATTGCTCCAAGGTTCCCAAAAGGAGGTGGAAAGAGAGGTGTTATGTTTGTAAGAGTTCAAGGGGATGTGCTATTCAGTGCTCTGAGCTTAAATGTCCGTTGGCTTTTCATGTGACTTGTGGATTGAATGAAGATCTTTGCTTAGAGTTGAGGGAAGGAAGGAAGCAGGGTGCTATTGTGGCTGGGTTTTGCAAAACTCACTCAGATCTGTGGAAAAAGCAAGAACAAACTGGGAAGTACAAGATTGTGGCTAGAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

343

Amino Acids

38.3

Weight (kDa)

4.93

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	545, 681
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	2 cut(s)	545, 681
AccB1I	GGYRCC	2 cut(s)	126, 274
AccII	CGCG	2 cut(s)	94, 713
AciI	CCGC	2 cut(s)	156, 239
AclWI	GGATC	2 cut(s)	12, 485
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	2 cut(s)	269, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	198, 559, 659, 789
AgsI	TTSAA	3 cut(s)	739, 825, 892
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	2 cut(s)	371, 853
AluI	AGCT	2 cut(s)	371, 853
Alw21I	GWGCWC	2 cut(s)	473, 848
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	12, 485
AoxI	GGCC	4 cut(s)	19, 207, 397, 751
ApeKI	GCWGC	2 cut(s)	64, 642
AspLEI	GCGC	3 cut(s)	96, 713, 715
AspS9I	GGNCC	3 cut(s)	207, 235, 253
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	235, 253
AxyI	CCTNAGG	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	2 cut(s)	126, 274
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	473, 848
BbvI	GCAGC	2 cut(s)	76, 629
BccI	CCATC	4 cut(s)	437, 470, 503, 680
BciT130I	CCWGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	1017
BfuAI	ACCTGC	2 cut(s)	545, 681
BglII	AGATCT	2 cut(s)	898, 970
BisI	GCNGC	3 cut(s)	65, 156, 643
BlsI	GCNGC	3 cut(s)	66, 157, 644
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	2 cut(s)	235, 253
BmgT120I	GGNCC	3 cut(s)	207, 235, 253
BmiI	GGNNCC	4 cut(s)	128, 237, 276, 780
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	1005
BmsI	GCATC	2 cut(s)	472, 494
BmuI	ACTGGG	1 cut(s)	1005
BpiI	GAAGAC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	16, 231, 384, 774
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 559, 659, 789
Bse1I	ACTGG	2 cut(s)	415, 1000
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	2 cut(s)	182, 675
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	16, 231, 384, 774
BseGI	GGATG	1 cut(s)	836
BseLI	CCNNNNNNNGG	4 cut(s)	198, 559, 659, 789
BseMI	GCAATG	2 cut(s)	182, 675
BseMII	CTCAG	4 cut(s)	618, 717, 840, 981
BseNI	ACTGG	2 cut(s)	415, 1000
BsePI	GCGCGC	1 cut(s)	711
BseRI	GAGGAG	2 cut(s)	18, 678
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	76, 629
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	2 cut(s)	94, 713
BshFI	GGCC	4 cut(s)	21, 209, 399, 753
BshNI	GGYRCC	2 cut(s)	126, 274
BsiHKAI	GWGCWC	2 cut(s)	473, 848
BslI	CCNNNNNNNGG	4 cut(s)	198, 559, 659, 789
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	4 cut(s)	21, 209, 399, 753
Bsp1286I	GDGCHC	3 cut(s)	473, 700, 848
Bsp143I	GATC	5 cut(s)	4, 490, 517, 898, 970
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	2 cut(s)	156, 239
BspANI	GGCC	4 cut(s)	21, 209, 399, 753
BspCNI	CTCAG	4 cut(s)	619, 718, 841, 980
BspFNI	CGCG	2 cut(s)	94, 713
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	128, 237, 276, 780
BspMI	ACCTGC	2 cut(s)	545, 681
BspPI	GGATC	2 cut(s)	12, 485
BspT107I	GGYRCC	2 cut(s)	126, 274
BsrDI	GCAATG	2 cut(s)	182, 675
BsrI	ACTGG	2 cut(s)	415, 1000
BssECI	CCNNGG	4 cut(s)	16, 231, 384, 774
BssHII	GCGCGC	1 cut(s)	711
BssMI	GATC	5 cut(s)	4, 490, 517, 898, 970
BssT1I	CCWWGG	2 cut(s)	16, 774
Bst2UI	CCWGG	1 cut(s)	386
Bst6I	CTCTTC	4 cut(s)	315, 327, 384, 640
BstC8I	GCNNGC	4 cut(s)	23, 189, 599, 713
BstDEI	CTNAG	5 cut(s)	627, 726, 849, 907, 967
BstDSI	CCRYGG	1 cut(s)	16
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	836
BstFNI	CGCG	2 cut(s)	94, 713
BstHHI	GCGC	3 cut(s)	96, 713, 715
BstKTI	GATC	5 cut(s)	7, 493, 520, 901, 973
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	5 cut(s)	4, 490, 517, 898, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 594, 944
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	2 cut(s)	94, 713
BstV1I	GCAGC	2 cut(s)	76, 629
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	3 cut(s)	490, 898, 970
BstYI	RGATCY	3 cut(s)	490, 898, 970
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	4 cut(s)	21, 209, 399, 753
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	836
BtsI	GCAGTG	3 cut(s)	162, 309, 370
BtsIMutI	CAGTG	5 cut(s)	162, 309, 370, 624, 848
BveI	ACCTGC	2 cut(s)	545, 681
Cac8I	GCNNGC	4 cut(s)	23, 189, 599, 713
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	3 cut(s)	96, 713, 715
Cfr13I	GGNCC	3 cut(s)	207, 235, 253
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	268, 1003
CviAII	CATG	5 cut(s)	17, 123, 350, 530, 875
CviQI	GTAC	2 cut(s)	268, 1003
DdeI	CTNAG	5 cut(s)	627, 726, 849, 907, 967
DpnI	GATC	5 cut(s)	6, 492, 519, 900, 972
DpnII	GATC	5 cut(s)	4, 490, 517, 898, 970
DraIII	CACNNNGTG	1 cut(s)	706
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	4 cut(s)	315, 327, 384, 640
EarI	CTCTTC	4 cut(s)	315, 327, 384, 640
Eco130I	CCWWGG	2 cut(s)	16, 774
Eco47I	GGWCC	2 cut(s)	235, 253
Eco81I	CCTNAGG	1 cut(s)	726
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	2 cut(s)	16, 774
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	16, 774
FaeI	CATG	5 cut(s)	20, 126, 353, 533, 878
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	5 cut(s)	16, 122, 349, 529, 874
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	65, 156, 643
FokI	GGATG	1 cut(s)	843
Fsp4HI	GCNGC	3 cut(s)	65, 156, 643
FspBI	CTAG	1 cut(s)	1017
GlaI	GCGC	3 cut(s)	95, 712, 714
GluI	GCNGC	3 cut(s)	65, 156, 643
GsaI	CCCAGC	1 cut(s)	951
HaeIII	GGCC	4 cut(s)	21, 209, 399, 753
HgaI	GACGC	1 cut(s)	600
HhaI	GCGC	3 cut(s)	96, 713, 715
Hin1II	CATG	5 cut(s)	20, 126, 353, 533, 878
Hin6I	GCGC	3 cut(s)	94, 711, 713
HinP1I	GCGC	3 cut(s)	94, 711, 713
HinfI	GANTC	4 cut(s)	12, 39, 290, 629
HphI	GGTGA	1 cut(s)	425
Hpy188I	TCNGA	8 cut(s)	9, 44, 232, 295, 468, 490, 850, 970
Hpy188III	TCNNGA	4 cut(s)	34, 350, 569, 725
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	6 cut(s)	107, 146, 331, 743, 914, 918
HpyCH4V	TGCA	5 cut(s)	52, 287, 363, 485, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 594, 944
HpyF3I	CTNAG	5 cut(s)	627, 726, 849, 907, 967
Hsp92II	CATG	5 cut(s)	20, 126, 353, 533, 878
HspAI	GCGC	3 cut(s)	94, 711, 713
Kzo9I	GATC	5 cut(s)	4, 490, 517, 898, 970
LmnI	GCTCC	3 cut(s)	593, 665, 776
Lsp1109I	GCAGC	2 cut(s)	76, 629
LweI	GCATC	2 cut(s)	472, 494
MaeI	CTAG	1 cut(s)	1017
MaeIII	GTNAC	1 cut(s)	877
MalI	GATC	5 cut(s)	6, 492, 519, 900, 972
MboI	GATC	5 cut(s)	4, 490, 517, 898, 970
MflI	RGATCY	3 cut(s)	490, 898, 970
MhlI	GDGCHC	3 cut(s)	473, 700, 848
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	299, 638
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	4 cut(s)	224, 258, 558, 855
MslI	CAYNNNNRTG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	94, 713
MwoI	GCNNNNNNNGC	3 cut(s)	164, 594, 944
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	5 cut(s)	4, 490, 517, 898, 970
NlaIII	CATG	5 cut(s)	20, 126, 353, 533, 878
NlaIV	GGNNCC	4 cut(s)	128, 237, 276, 780
NmeAIII	GCCGAG	1 cut(s)	779
NmuCI	GTSAC	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	487
PagI	TCATGA	1 cut(s)	349
PaqCI	CACCTGC	2 cut(s)	545, 681
PauI	GCGCGC	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	12, 39
PkrI	GCNGC	3 cut(s)	66, 157, 644
PleI	GAGTC	2 cut(s)	298, 637
PpsI	GAGTC	2 cut(s)	298, 637
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	4 cut(s)	128, 237, 276, 780
PspPI	GGNCC	3 cut(s)	207, 235, 253
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	490, 898, 970
PteI	GCGCGC	1 cut(s)	711
RsaI	GTAC	2 cut(s)	269, 1004
RsaNI	GTAC	2 cut(s)	268, 1003
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	224, 258, 558, 855
SatI	GCNGC	3 cut(s)	65, 156, 643
Sau3AI	GATC	5 cut(s)	4, 490, 517, 898, 970
Sau96I	GGNCC	3 cut(s)	207, 235, 253
SchI	GAGTC	2 cut(s)	299, 638
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	3 cut(s)	473, 700, 848
SfaNI	GCATC	2 cut(s)	472, 494
SinI	GGWCC	2 cut(s)	235, 253
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	2 cut(s)	156, 239
SspMI	CTAG	1 cut(s)	1017
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	2 cut(s)	16, 774
TaqI	TCGA	2 cut(s)	245, 264
TasI	AATT	1 cut(s)	405
TatI	WGTACW	2 cut(s)	267, 1002
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	12, 39
Tru1I	TTAA	4 cut(s)	224, 258, 558, 855
Tru9I	TTAA	4 cut(s)	224, 258, 558, 855
TscAI	CASTG	5 cut(s)	169, 309, 370, 631, 848
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	2 cut(s)	64, 642
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	9 cut(s)	171, 338, 366, 432, 444, 518, 686, 863, 909
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	5 cut(s)	169, 309, 370, 631, 848
VpaK11BI	GGWCC	2 cut(s)	235, 253
XagI	CCTNNNNNAGG	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	2 cut(s)	407, 576
XspI	CTAG	1 cut(s)	1017
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.