Rw5G018580

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004804
Physical Location & Seq
Reverse (-)
23959382 .. 23960006
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018580.1

Sequence Viewer

Length: 375 bp
ATGGTTCATGCCACCTGCTATGGTAATCCCCTTGTAAAGGGTATTCCAGAGGGGGATTGGTTCTGCTCGCAATGCTCCGGTTCTTCTGAGGCTTCACAGTCCAATGTGTCTTTCTCTTGCTGTCTGTGTCCCGGCAAAGGTGGAGCAATGAAGGCAACTGGAGATGGCCGGTGGGCACATATCGTGTGTGCTCTTTATGTTCCTGGGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGAGTACAGGGAAGGAAGGAAGGAAGGGTGATTTTATAGCTGGGTTTTGCAGAACCCACACTGATTTGTGGGAAAAGCAACAAGAATCTGGGAAGTTCAAGATCGTGGCTAGAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

124

Amino Acids

13.38

Weight (kDa)

8.07

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HC5HC2H_2 PF13832 39 - 89 5.8e-12 PHD-zinc-finger like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 166
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 2 cut(s) 37, 137
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 193
AoxI GGCC 2 cut(s) 166, 229
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 2 cut(s) 132, 224
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 193
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 2 cut(s) 132, 224
BfaI CTAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 23
Bme1390I CCNGG 3 cut(s) 132, 204, 224
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 3 cut(s) 132, 204, 224
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 132, 224
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 137
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 2 cut(s) 77, 153
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 37, 137
BseMI GCAATG 2 cut(s) 77, 153
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 293
BshFI GGCC 2 cut(s) 168, 231
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 4 cut(s) 78, 132, 169, 224
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 37, 137
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 168, 231
Bsp1286I GDGCHC 2 cut(s) 178, 193
Bsp143I GATC 1 cut(s) 354
BspANI GGCC 2 cut(s) 168, 231
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 23
BsrDI GCAATG 2 cut(s) 77, 153
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 87
BstENI CCTNNNNNAGG 1 cut(s) 35
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 72, 152
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 130, 202, 222
BstSLI GKGCMC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 168, 231
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 92, 168, 231, 293, 362
CviKI_1 RGCY 5 cut(s) 92, 168, 231, 293, 362
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 21, 180, 198, 290
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 7
FspBI CTAG 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 168, 231
HapII CCGG 4 cut(s) 78, 132, 169, 224
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 338
HpaII CCGG 4 cut(s) 78, 132, 169, 224
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 47, 352
HpyAV CCTTC 6 cut(s) 145, 221, 259, 263, 267, 271
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 152
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 80, 143
MaeI CTAG 1 cut(s) 363
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 178, 193
MnlI CCTC 3 cut(s) 43, 82, 229
MseI TTAA 1 cut(s) 216
MspI CCGG 4 cut(s) 78, 132, 169, 224
MspR9I CCNGG 3 cut(s) 132, 204, 224
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 72, 152
NciI CCSGG 2 cut(s) 132, 224
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 222
NmeAIII GCCGAG 1 cut(s) 257
PaqCI CACCTGC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 132, 204, 224
SduI GDGCHC 2 cut(s) 178, 193
SetI ASST 3 cut(s) 17, 142, 295
SinI GGWCC 1 cut(s) 220
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 130, 202, 222
TaaI ACNGT 1 cut(s) 99
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.