Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Reverse (-)

23775821 .. 23776405

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTCATTCTACCTGCTATGGCAATCCCCTTGTAAAGGGTATTCCAGAGGGGGATTGGTTCTGCTCGCAATGCTCTGGTTCTTGTGAGGCTTCACAGTCCGATGAGTCTTTCTCTTGCTGTCTGTGTCCTGGCAAAGGTGGAGCAATGAAGCCAACTGGAGATGGCCGGTGGGCACATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGGTTCCGAAGAGGAGGTGGAAAGAGAGGTGTTATGTTTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTCGGAAATCAAATGTCCTTTAGCGTTCCATGTGACTTGTGGTTTCAACGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGGTGATATTCTAGCTGGGTTTTGCAGAACCCACACTGATTTGTGGGAAAAGCGACAAGAATCTGGGAAGTTCAAGATCGTGGCTAGAAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

7.83

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	39 - 135	3.3e-30	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	60 - 148	2.7e-18	PHD-like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccII	CGCG	1 cut(s)	191
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	37, 137
AgsI	TTSAA	2 cut(s)	370, 481
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	2 cut(s)	166, 229
AspLEI	GCGC	2 cut(s)	191, 193
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	326
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	419, 492
BfuAI	ACCTGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	132, 224
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	222, 258
BmrFI	CCNGG	2 cut(s)	132, 224
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 137
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	77, 153
BseBI	CCWGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	37, 137
BseMI	GCAATG	2 cut(s)	77, 153
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	163
BsePI	GCGCGC	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	168, 231
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	169, 224
BslI	CCNNNNNNNGG	2 cut(s)	37, 137
BsnI	GGCC	2 cut(s)	168, 231
Bsp1286I	GDGCHC	2 cut(s)	178, 326
Bsp143I	GATC	2 cut(s)	376, 483
BspANI	GGCC	2 cut(s)	168, 231
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	222, 258
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	77, 153
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	168
BssHII	GCGCGC	1 cut(s)	189
BssMI	GATC	2 cut(s)	376, 483
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	68, 191
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	2 cut(s)	35, 135
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	2 cut(s)	191, 193
BstKTI	GATC	2 cut(s)	379, 486
BstMBI	GATC	2 cut(s)	376, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	130, 222
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	168, 231
BtsIMutI	CAGTG	2 cut(s)	326, 441
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	68, 191
CfoI	GCGC	2 cut(s)	191, 193
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	6 cut(s)	92, 154, 168, 231, 422, 491
CviKI_1	RGCY	6 cut(s)	92, 154, 168, 231, 422, 491
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	378, 485
DpnII	GATC	2 cut(s)	376, 483
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	2 cut(s)	35, 135
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	356
FaiI	YATR	6 cut(s)	21, 180, 198, 288, 354, 386
FatI	CATG	1 cut(s)	352
FspBI	CTAG	2 cut(s)	419, 492
GlaI	GCGC	2 cut(s)	190, 192
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	168, 231
HapII	CCGG	2 cut(s)	169, 224
HhaI	GCGC	2 cut(s)	191, 193
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	2 cut(s)	189, 191
HinP1I	GCGC	2 cut(s)	189, 191
HinfI	GANTC	2 cut(s)	107, 467
HpaII	CCGG	2 cut(s)	169, 224
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	103, 261, 328
Hpy188III	TCNNGA	3 cut(s)	47, 203, 481
HpyAV	CCTTC	4 cut(s)	221, 392, 396, 400
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	294, 302, 384, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	2 cut(s)	189, 191
Kzo9I	GATC	2 cut(s)	376, 483
LmnI	GCTCC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	419, 492
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	378, 485
MboI	GATC	2 cut(s)	376, 483
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	178, 326
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	8 cut(s)	43, 82, 199, 229, 258, 261, 273, 367
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	169, 224
MspR9I	CCNGG	2 cut(s)	132, 224
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	376, 483
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	222, 258
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	355
PauI	GCGCGC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	222, 258
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	376
PteI	GCGCGC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	376, 483
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	132, 224
SduI	GDGCHC	2 cut(s)	178, 326
SetI	ASST	7 cut(s)	17, 142, 210, 258, 272, 284, 424
SinI	GGWCC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	419, 492
StyD4I	CCNGG	2 cut(s)	130, 222
TaaI	ACNGT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	326, 448
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	326, 448
VpaK11BI	GGWCC	1 cut(s)	220
XagI	CCTNNNNNAGG	2 cut(s)	35, 135
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 359
XspI	CTAG	2 cut(s)	419, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.