Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8077588.1

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 411

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8077588.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 368 bp

agggggattggttctgctcgcaatgctccggttcttctgaggcttcacagtccaatgtgtctttctcttgctgtctgtgtcccggcaaaggtggagcaatgaaggcaactggagatggccggtgggcacatatcgtgtgtgctctttatgttcctggggtgttctttaaggacccggaaggccgagaggggattgattgctcaaaggttccgaagacgaggtggaaagagaggtgttatgtttgcaagagtgcaagtgggtgtgctattcagtgctcggaaatcaaatgtcctttagcgttccatgtgacttgtggtttcaacgaggatctttgcatggagtacagggaaggaaggaaggaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

121

Amino Acids

13.17

Weight (kDa)

7.56

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	117
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
Alw21I	GWGCWC	2 cut(s)	144, 277
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	117, 180
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	2 cut(s)	83, 175
AvaII	GGWCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	2 cut(s)	144, 277
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	2 cut(s)	83, 175
Bme1390I	CCNGG	3 cut(s)	83, 155, 175
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	173, 209
BmrFI	CCNGG	3 cut(s)	83, 155, 175
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	83, 175
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	28, 104
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	28, 104
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	119, 182
BsiHKAI	GWGCWC	2 cut(s)	144, 277
BsiSI	CCGG	4 cut(s)	29, 83, 120, 175
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	119, 182
Bsp1286I	GDGCHC	3 cut(s)	129, 144, 277
Bsp143I	GATC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	119, 182
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	173, 209
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	28, 104
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 103
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	3 cut(s)	81, 153, 173
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	119, 182
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	304, 336
CviJI	RGCY	3 cut(s)	43, 119, 182
CviKI_1	RGCY	3 cut(s)	43, 119, 182
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	307, 339
FaiI	YATR	5 cut(s)	131, 149, 239, 305, 337
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	303, 335
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	119, 182
HapII	CCGG	4 cut(s)	29, 83, 120, 175
Hin1II	CATG	2 cut(s)	307, 339
HpaII	CCGG	4 cut(s)	29, 83, 120, 175
Hpy188I	TCNGA	3 cut(s)	39, 212, 279
HpyAV	CCTTC	6 cut(s)	96, 172, 343, 347, 351, 355
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	245, 253, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 103
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	307, 339
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	31, 94
LpnPI	CCDG	8 cut(s)	42, 95, 96, 133, 140, 167, 188, 330
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	26, 225
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	3 cut(s)	129, 144, 277
MnlI	CCTC	5 cut(s)	33, 180, 212, 224, 318
MseI	TTAA	1 cut(s)	167
MspI	CCGG	4 cut(s)	29, 83, 120, 175
MspR9I	CCNGG	3 cut(s)	83, 155, 175
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	23, 103
NciI	CCSGG	2 cut(s)	83, 175
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	307, 339
NlaIV	GGNNCC	2 cut(s)	173, 209
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	173, 209
PspPI	GGNCC	1 cut(s)	171
PspPPI	RGGWCCY	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	83, 155, 175
SduI	GDGCHC	3 cut(s)	129, 144, 277
SetI	ASST	4 cut(s)	93, 209, 223, 235
SinI	GGWCC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	81, 153, 173
TaaI	ACNGT	1 cut(s)	50
TatI	WGTACW	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.