FvH4_3g17570

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004804
Physical Location & Seq
Reverse (-)
11183837 .. 11195634
11798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17570.t3

Sequence Viewer

Length: 852 bp
ATGGATCCCCAATTCCACGGCCTCCCTCCTCTCAAAAGATTCAGACTCATGCAGCAACACAACCACAACCACCACCGCGACGACGTCGTTTCGCCCATTCTTCCGGCCAAGAAGCGAAAGGAGACTAGAGACCAACCCATTCCCCCTGACCCAATTCCCGCCGCCTTCGCCGTCAACACCTATTCGTTGCCGGCGAAGAAGCGTGTGTGGGCGCTTCCGCCGGATTTAGTAACCCCCGAGAAGCCGGTTCCGGAGTTGGATTTAAATCTTGAGTACAAGCCGGAGGCGGAGGCTGCCACGGAGAAAGTTGAAGAATGCACGGAAGGTGTTTGTGAAAATGCCTCAGAGAAGAGCCCGGAAGATTCGGGCGTCGAGGAAGAGTGTGATGATGAAGATGAGGATGGGATTGTTTGTAATGTTTGTAAGAGCTCAGATGGAGATCCGTCAGATCCGATTGTGTTCTGTGACGGGTGTGATCTGATGGTTCATGCCACCTGCTATGGTAATCCCCTTGTGAAGGGTATTCCAGAGGGAGATTGGTTCTGCTCGCAATGCTCTGGTTCTTCTGAGGCTTTGCGGGGTGATGACTCTTTGAATTGCTGTCTTTGCCCCGGCAAAGGTGGGGCAATGAAACCGACTGGAGATGGGCGGTGGGCGCATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGACTGCTCCAAGGTTCCCAAGAGGAGAGGTGGAAAGAGAGGTGTTATGTTTGCAAGAGCGAAAGCGGGTGTGCTATTCAGTGTTCGGAGATCAAATGCCCTTTGGCGTTTCATGCGACTTGTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

284

Amino Acids

31.18

Weight (kDa)

5.29

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 138 - 185 1.1e-10 PHD-finger
PHD_2 PF13831 150 - 185 9.9e-10 PHD-finger
zf-HC5HC2H_2 PF13832 199 - 264 1.9e-13 PHD-zinc-finger like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 503
AatII GACGTC 1 cut(s) 87
Acc36I ACCTGC 1 cut(s) 503
AccII CGCG 2 cut(s) 78, 671
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 8 cut(s) 76, 159, 162, 218, 287, 577, 649, 788
AclWI GGATC 3 cut(s) 12, 434, 443
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 2 cut(s) 84, 369
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 517, 617
AgsI TTSAA 2 cut(s) 311, 595
AluBI AGCT 1 cut(s) 429
AluI AGCT 1 cut(s) 429
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 2 cut(s) 116, 123
AlwI GGATC 3 cut(s) 12, 434, 443
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 3 cut(s) 19, 105, 709
ApeKI GCWGC 2 cut(s) 52, 293
AspLEI GCGC 4 cut(s) 214, 658, 671, 673
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 3 cut(s) 356, 612, 704
AsuHPI GGTGA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 700
AxyI CCTNAGG 1 cut(s) 684
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 356, 431
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 64, 280
BccI CCATC 4 cut(s) 395, 428, 475, 638
BceAI ACGGC 2 cut(s) 34, 155
BcnI CCSGG 3 cut(s) 356, 612, 704
BcoDI GTCTC 2 cut(s) 116, 123
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 3 cut(s) 53, 162, 294
BlsI GCNGC 3 cut(s) 54, 163, 295
Bme1390I CCNGG 3 cut(s) 356, 612, 704
Bme18I GGWCC 1 cut(s) 700
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 4 cut(s) 6, 249, 702, 738
BmrFI CCNGG 3 cut(s) 356, 612, 704
BpmI CTGGAG 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 3 cut(s) 356, 612, 704
BsaBI GATNNNNATC 2 cut(s) 264, 438
BsaHI GRCGYC 2 cut(s) 84, 369
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 16, 297, 610, 732
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 617
Bse118I RCCGGY 2 cut(s) 190, 244
Bse1I ACTGG 1 cut(s) 643
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 2 cut(s) 557, 633
Bse8I GATNNNNATC 2 cut(s) 264, 438
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 4 cut(s) 16, 297, 610, 732
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 2 cut(s) 264, 438
BseLI CCNNNNNNNGG 2 cut(s) 517, 617
BseMI GCAATG 2 cut(s) 557, 633
BseMII CTCAG 4 cut(s) 357, 444, 558, 675
BseNI ACTGG 1 cut(s) 643
BsePI GCGCGC 1 cut(s) 669
BseRI GAGGAG 2 cut(s) 18, 760
BseXI GCAGC 2 cut(s) 64, 280
Bsh1236I CGCG 2 cut(s) 78, 671
BshFI GGCC 3 cut(s) 21, 107, 711
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 9 cut(s) 104, 191, 221, 245, 251, 281, 356, 612, 704
BslI CCNNNNNNNGG 2 cut(s) 517, 617
BsmAI GTCTC 2 cut(s) 116, 123
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 3 cut(s) 21, 107, 711
Bso31I GGTCTC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 356, 431
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 5 cut(s) 4, 439, 448, 475, 812
BspACI CCGC 8 cut(s) 76, 159, 162, 218, 287, 577, 649, 788
BspANI GGCC 3 cut(s) 21, 107, 711
BspCNI CTCAG 4 cut(s) 356, 443, 559, 676
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 2 cut(s) 78, 671
BspLI GGNNCC 4 cut(s) 6, 249, 702, 738
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 3 cut(s) 12, 434, 443
BspQI GCTCTTC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 123
BsrDI GCAATG 2 cut(s) 557, 633
BsrFI RCCGGY 2 cut(s) 190, 244
BsrI ACTGG 1 cut(s) 643
BssAI RCCGGY 2 cut(s) 190, 244
BssECI CCNNGG 4 cut(s) 16, 297, 610, 732
BssHII GCGCGC 1 cut(s) 669
BssMI GATC 5 cut(s) 4, 439, 448, 475, 812
BssNI GRCGYC 2 cut(s) 84, 369
BssT1I CCWWGG 1 cut(s) 732
Bst6I CTCTTC 2 cut(s) 344, 372
BstACI GRCGYC 2 cut(s) 84, 369
BstC8I GCNNGC 3 cut(s) 192, 548, 671
BstDEI CTNAG 4 cut(s) 343, 430, 567, 684
BstDSI CCRYGG 2 cut(s) 16, 297
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 78, 671
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 4 cut(s) 214, 658, 671, 673
BstKTI GATC 5 cut(s) 7, 442, 451, 478, 815
BstMAI GTCTC 2 cut(s) 116, 123
BstMBI GATC 5 cut(s) 4, 439, 448, 475, 812
BstMWI GCNNNNNNNGC 6 cut(s) 167, 293, 552, 606, 655, 835
BstSCI CCNGG 3 cut(s) 354, 610, 702
BstUI CGCG 2 cut(s) 78, 671
BstV1I GCAGC 2 cut(s) 64, 280
BstX2I RGATCY 3 cut(s) 4, 439, 448
BstYI RGATCY 3 cut(s) 4, 439, 448
Bsu36I CCTNAGG 1 cut(s) 684
BsuRI GGCC 3 cut(s) 21, 107, 711
BtgI CCRYGG 2 cut(s) 16, 297
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 808
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 3 cut(s) 192, 548, 671
CfoI GCGC 4 cut(s) 214, 658, 671, 673
Cfr10I RCCGGY 2 cut(s) 190, 244
Cfr13I GGNCC 1 cut(s) 700
CseI GACGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 274
CviAII CATG 3 cut(s) 49, 488, 835
CviJI RGCY 9 cut(s) 21, 107, 244, 280, 293, 354, 429, 572, 711
CviKI_1 RGCY 9 cut(s) 21, 107, 244, 280, 293, 354, 429, 572, 711
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 4 cut(s) 343, 430, 567, 684
DpnI GATC 5 cut(s) 6, 441, 450, 477, 814
DpnII GATC 5 cut(s) 4, 439, 448, 475, 812
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 344, 372
EarI CTCTTC 2 cut(s) 344, 372
EciI GGCGGA 2 cut(s) 207, 302
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 732
Eco24I GRGCYC 2 cut(s) 356, 431
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 732
EcoT38I GRGCYC 2 cut(s) 356, 431
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 3 cut(s) 52, 491, 838
FaiI YATR 7 cut(s) 50, 489, 501, 660, 678, 770, 836
FatI CATG 3 cut(s) 48, 487, 834
FauI CCCGC 3 cut(s) 166, 570, 781
Fnu4HI GCNGC 3 cut(s) 53, 162, 294
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 2 cut(s) 356, 431
Fsp4HI GCNGC 3 cut(s) 53, 162, 294
FspBI CTAG 1 cut(s) 126
GlaI GCGC 4 cut(s) 213, 657, 670, 672
GluI GCNGC 3 cut(s) 53, 162, 294
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 21, 107, 711
HapII CCGG 9 cut(s) 104, 191, 221, 245, 251, 281, 356, 612, 704
HgaI GACGC 1 cut(s) 358
HhaI GCGC 4 cut(s) 214, 658, 671, 673
Hin1I GRCGYC 2 cut(s) 84, 369
Hin1II CATG 3 cut(s) 52, 491, 838
Hin6I GCGC 4 cut(s) 212, 656, 669, 671
HinP1I GCGC 4 cut(s) 212, 656, 669, 671
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 4 cut(s) 39, 45, 362, 587
HpaII CCGG 9 cut(s) 104, 191, 221, 245, 251, 281, 356, 612, 704
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 8 cut(s) 44, 346, 433, 448, 453, 480, 568, 810
Hpy188III TCNNGA 4 cut(s) 251, 269, 527, 683
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 4 cut(s) 83, 86, 89, 374
HpyAV CCTTC 4 cut(s) 175, 317, 511, 701
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 52, 318, 776
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 293, 552, 606, 655, 835
HpyF3I CTNAG 4 cut(s) 343, 430, 567, 684
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 2 cut(s) 84, 369
Hsp92II CATG 3 cut(s) 52, 491, 838
HspAI GCGC 4 cut(s) 212, 656, 669, 671
Kpn2I TCCGGA 1 cut(s) 250
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Kzo9I GATC 5 cut(s) 4, 439, 448, 475, 812
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 2 cut(s) 64, 280
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 229, 464
MalI GATC 5 cut(s) 6, 441, 450, 477, 814
MboI GATC 5 cut(s) 4, 439, 448, 475, 812
MboII GAAGA 8 cut(s) 92, 208, 323, 361, 371, 389, 404, 555
MflI RGATCY 3 cut(s) 4, 439, 448
MhlI GDGCHC 2 cut(s) 356, 431
MluCI AATT 3 cut(s) 11, 153, 595
MlyI GAGTC 2 cut(s) 39, 581
MmeI TCCRAC 1 cut(s) 237
MroI TCCGGA 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 190
MseI TTAA 2 cut(s) 263, 696
MspI CCGG 9 cut(s) 104, 191, 221, 245, 251, 281, 356, 612, 704
MspR9I CCNGG 3 cut(s) 356, 612, 704
Mva1269I GAATGC 1 cut(s) 320
MvnI CGCG 2 cut(s) 78, 671
MwoI GCNNNNNNNGC 6 cut(s) 167, 293, 552, 606, 655, 835
NaeI GCCGGC 1 cut(s) 192
NciI CCSGG 3 cut(s) 356, 612, 704
NdeII GATC 5 cut(s) 4, 439, 448, 475, 812
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 3 cut(s) 52, 491, 838
NlaIV GGNNCC 4 cut(s) 6, 249, 702, 738
NmeAIII GCCGAG 1 cut(s) 737
NmuCI GTSAC 1 cut(s) 464
PaqCI CACCTGC 1 cut(s) 503
PauI GCGCGC 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PctI GAATGC 1 cut(s) 320
PdiI GCCGGC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 39, 362
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 54, 163, 295
PleI GAGTC 2 cut(s) 39, 581
PpsI GAGTC 2 cut(s) 39, 581
PpuMI RGGWCCY 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 700
PspN4I GGNNCC 4 cut(s) 6, 249, 702, 738
PspPI GGNCC 1 cut(s) 700
PspPPI RGGWCCY 1 cut(s) 700
PsuI RGATCY 3 cut(s) 4, 439, 448
PsyI GACNNNGTC 1 cut(s) 83
PteI GCGCGC 1 cut(s) 669
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 263, 696
SatI GCNGC 3 cut(s) 53, 162, 294
Sau3AI GATC 5 cut(s) 4, 439, 448, 475, 812
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 2 cut(s) 39, 581
ScrFI CCNGG 3 cut(s) 356, 612, 704
SduI GDGCHC 2 cut(s) 356, 431
SinI GGWCC 1 cut(s) 700
SmiI ATTTAAAT 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 3 cut(s) 11, 153, 595
SsiI CCGC 8 cut(s) 76, 159, 162, 218, 287, 577, 649, 788
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 3 cut(s) 354, 610, 702
StyI CCWWGG 1 cut(s) 732
SwaI ATTTAAAT 1 cut(s) 264
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 372
TasI AATT 3 cut(s) 11, 153, 595
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 39, 362
Tru1I TTAA 2 cut(s) 263, 696
Tru9I TTAA 2 cut(s) 263, 696
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 2 cut(s) 52, 293
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 4 cut(s) 405, 476, 644, 823
TspGWI ACGGA 3 cut(s) 314, 335, 432
TspRI CASTG 1 cut(s) 808
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 700
XagI CCTNNNNNAGG 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.