Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Forward (+)

33906730 .. 33908394

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1251300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATCAGAAATTTCATGGCCTGCCTCCTCTCAAGAGATTCAGACTCATGCAGCAACAGCAGCAGAAGGATGCCCTTTTGTCCCCGTCGCGCCTTCCAGCAAAGAAGCGAAAGGCGCCAAGAGACCAACTCGTTCTCCCTGACCCCACCGCCTCTGCTGCTGCCGGCTCCACCTATTCCCTGCCTGCCAAGAAAAGGGTTTGGGCGTTTCAGCCCGATTTGTTCACTGAAGAGCCACTTTCGACATTGGACCTTAATGTCGAGTATAAGCCGCCTTTTGGGTGGGAGCTGGAAGAAGAGGCAGTGGAGAAATTGGAGGAAGAGAAGGGTGAAGCTGAAAATGGTTGCAATGAAGATATTGAAAATACCCGAGAGGAGAAAAGCCAAGAAATCGCAGGGGATGGGGAGTGCAATGAAGAAGAAGAAGATGATGCTGATGATGGGATTGTTTGTGCTGTTTGTCAGAGCACAGATGGAGATCCATCAGATCCAATTGTCTTTTGTGATGGGTGTAATCTGATGGTTCATGCCTCCTGCTATGGCAATCCACTCATAAAGGGTATTCCGGAAGGTGATTGGTTCTGCGCCCAATGCGCGTTTTCTGCTGTGCATTCTCAATCCAATGAGTCCTGTTCTTGCTGCTTATGTCCTGTCAAAGGAGGGGCAATGAAGCCCACTGGAGACGGCAGGTGGGCACACATTGTGTGTGCGCTTTATGTCCCGGAGGTGTTCTTCAAGGACCCTGAAGGCCGGGAGGGGATTGATTGCTCCAAGGTTCCGAAAAGGCGGTGGAAGGAGAGATGCTATGTTTGTGAGAGTTCAAAGGGGTGTGCTATTCAGTGCTCCGAGCTTAAGTGCCCTCTGGCATTTCATGTGAGTTGTGGCTTGAATGAGGATCTTTGTATTGAGTACAAGGAAGGAAGGAATACGGGAGCTATTGTGGCTGGGTTTTGTAAAAAGCACTCAGATCTGTGGAAAAAGCAAGAACAAACCGGGAAGTACAAGATTGTCGCTAGAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

342

Amino Acids

37.9

Weight (kDa)

4.95

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	151 - 198	6.4e-11	PHD-finger
PHD_2	PF13831	163 - 199	5.2e-11	PHD-finger
zf-HC5HC2H_2	PF13832	212 - 321	4.9e-29	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	233 - 322	1e-17	PHD-like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	678
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	115
AccII	CGCG	2 cut(s)	91, 596
AccIII	TCCGGA	1 cut(s)	565
AciI	CCGC	3 cut(s)	150, 272, 787
AclWI	GGATC	4 cut(s)	12, 473, 482, 903
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	249, 765
AcyI	GRCGYC	1 cut(s)	116
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	2 cut(s)	911, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	195, 278, 656
AflII	CTTAAG	1 cut(s)	851
AgsI	TTSAA	4 cut(s)	362, 736, 822, 889
AluBI	AGCT	4 cut(s)	289, 335, 850, 935
AluI	AGCT	4 cut(s)	289, 335, 850, 935
Alw21I	GWGCWC	2 cut(s)	470, 845
Alw26I	GTCTC	2 cut(s)	117, 675
AlwI	GGATC	4 cut(s)	12, 473, 482, 903
Ama87I	CYCGRG	1 cut(s)	369
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	2 cut(s)	19, 748
ApeKI	GCWGC	5 cut(s)	52, 61, 158, 161, 639
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	5 cut(s)	93, 118, 587, 596, 712
AspS9I	GGNCC	2 cut(s)	250, 739
AsuC2I	CCSGG	3 cut(s)	722, 752, 994
AsuHPI	GGTGA	2 cut(s)	341, 584
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	250, 739
BaeGI	GKGCMC	2 cut(s)	697, 860
BanI	GGYRCC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	470, 845
BbvI	GCAGC	5 cut(s)	64, 73, 145, 148, 626
BccI	CCATC	6 cut(s)	395, 434, 467, 490, 500, 514
BceAI	ACGGC	1 cut(s)	700
BcnI	CCSGG	3 cut(s)	722, 752, 994
BcoDI	GTCTC	2 cut(s)	117, 675
BfaI	CTAG	1 cut(s)	1014
BfoI	RGCGCY	1 cut(s)	119
BfrI	CTTAAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	678
BglII	AGATCT	1 cut(s)	967
BisI	GCNGC	6 cut(s)	53, 62, 159, 162, 272, 640
BlsI	GCNGC	6 cut(s)	54, 63, 160, 163, 273, 641
Bme1390I	CCNGG	3 cut(s)	722, 752, 994
Bme18I	GGWCC	2 cut(s)	250, 739
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	250, 739
BmiI	GGNNCC	4 cut(s)	117, 169, 741, 777
BmrFI	CCNGG	3 cut(s)	722, 752, 994
BmsI	GCATC	3 cut(s)	61, 421, 791
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpmI	CTGGAG	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	3 cut(s)	722, 752, 994
BsaBI	GATNNNNATC	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	771
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 924, 954
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 278, 656
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	3 cut(s)	355, 418, 672
Bse8I	GATNNNNATC	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	2 cut(s)	76, 406
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	195, 278, 656
BseMI	GCAATG	3 cut(s)	355, 418, 672
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	2 cut(s)	18, 389
BseSI	GKGCMC	2 cut(s)	697, 860
BseXI	GCAGC	5 cut(s)	64, 73, 145, 148, 626
BseYI	CCCAGC	1 cut(s)	944
Bsh1236I	CGCG	2 cut(s)	91, 596
BshFI	GGCC	2 cut(s)	21, 750
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	470, 845
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	5 cut(s)	165, 566, 722, 751, 993
BslFI	GGGAC	2 cut(s)	67, 704
BslI	CCNNNNNNNGG	3 cut(s)	195, 278, 656
BsmAI	GTCTC	2 cut(s)	117, 675
BsmBI	CGTCTC	1 cut(s)	675
BsmFI	GGGAC	2 cut(s)	67, 704
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	21, 750
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	4 cut(s)	470, 697, 845, 860
Bsp13I	TCCGGA	1 cut(s)	565
Bsp143I	GATC	5 cut(s)	4, 478, 487, 895, 967
BspACI	CCGC	3 cut(s)	150, 272, 787
BspANI	GGCC	2 cut(s)	21, 750
BspCNI	CTCAG	1 cut(s)	977
BspEI	TCCGGA	1 cut(s)	565
BspFNI	CGCG	2 cut(s)	91, 596
BspLI	GGNNCC	4 cut(s)	117, 169, 741, 777
BspMI	ACCTGC	1 cut(s)	678
BspPI	GGATC	4 cut(s)	12, 473, 482, 903
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	851
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	3 cut(s)	355, 418, 672
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	5 cut(s)	4, 478, 487, 895, 967
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	771
Bst6I	CTCTTC	3 cut(s)	225, 291, 315
BstACI	GRCGYC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	23, 166, 186
BstDEI	CTNAG	1 cut(s)	964
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	2 cut(s)	76, 406
BstFNI	CGCG	2 cut(s)	91, 596
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	5 cut(s)	93, 118, 587, 596, 712
BstKTI	GATC	5 cut(s)	7, 481, 490, 898, 970
BstMAI	GTCTC	2 cut(s)	117, 675
BstMBI	GATC	5 cut(s)	4, 478, 487, 895, 967
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 61, 115, 158, 591, 593, 602, 941
BstSCI	CCNGG	3 cut(s)	720, 750, 992
BstSLI	GKGCMC	2 cut(s)	697, 860
BstUI	CGCG	2 cut(s)	91, 596
BstV1I	GCAGC	5 cut(s)	64, 73, 145, 148, 626
BstX2I	RGATCY	4 cut(s)	478, 487, 895, 967
BstYI	RGATCY	4 cut(s)	478, 487, 895, 967
BsuRI	GGCC	2 cut(s)	21, 750
BtsCI	GGATG	2 cut(s)	76, 406
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	4 cut(s)	225, 309, 675, 845
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	23, 166, 186
CfoI	GCGC	5 cut(s)	93, 118, 587, 596, 712
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	250, 739
Csp6I	GTAC	2 cut(s)	910, 1000
CviAII	CATG	4 cut(s)	17, 49, 527, 872
CviQI	GTAC	2 cut(s)	910, 1000
DdeI	CTNAG	1 cut(s)	964
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	5 cut(s)	6, 480, 489, 897, 969
DpnII	GATC	5 cut(s)	4, 478, 487, 895, 967
DraIII	CACNNNGTG	1 cut(s)	703
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	3 cut(s)	225, 291, 315
EarI	CTCTTC	3 cut(s)	225, 291, 315
Eco130I	CCWWGG	1 cut(s)	771
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	250, 739
Eco57I	CTGAAG	2 cut(s)	249, 765
Eco88I	CYCGRG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	771
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	771
Esp3I	CGTCTC	1 cut(s)	675
FaeI	CATG	4 cut(s)	20, 52, 530, 875
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	2 cut(s)	67, 704
FatI	CATG	4 cut(s)	16, 48, 526, 871
Fnu4HI	GCNGC	6 cut(s)	53, 62, 159, 162, 272, 640
FokI	GGATG	2 cut(s)	83, 413
Fsp4HI	GCNGC	6 cut(s)	53, 62, 159, 162, 272, 640
FspBI	CTAG	1 cut(s)	1014
GlaI	GCGC	5 cut(s)	92, 117, 586, 595, 711
GluI	GCNGC	6 cut(s)	53, 62, 159, 162, 272, 640
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	21, 750
HapII	CCGG	5 cut(s)	165, 566, 722, 751, 993
HhaI	GCGC	5 cut(s)	93, 118, 587, 596, 712
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	20, 52, 530, 875
Hin6I	GCGC	5 cut(s)	91, 116, 585, 594, 710
HinP1I	GCGC	5 cut(s)	91, 116, 585, 594, 710
HinfI	GANTC	3 cut(s)	39, 45, 626
HpaII	CCGG	5 cut(s)	165, 566, 722, 751, 993
HphI	GGTGA	2 cut(s)	341, 584
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	8 cut(s)	9, 44, 465, 487, 519, 780, 847, 967
Hpy188III	TCNNGA	2 cut(s)	34, 566
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	8 cut(s)	61, 104, 319, 563, 740, 787, 911, 915
HpyCH4V	TGCA	4 cut(s)	52, 348, 411, 610
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 61, 115, 158, 591, 593, 602, 941
HpyF3I	CTNAG	1 cut(s)	964
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	20, 52, 530, 875
HspAI	GCGC	5 cut(s)	91, 116, 585, 594, 710
KasI	GGCGCC	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	565
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	4, 478, 487, 895, 967
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	5 cut(s)	173, 286, 773, 848, 932
Lsp1109I	GCAGC	5 cut(s)	64, 73, 145, 148, 626
LweI	GCATC	3 cut(s)	61, 421, 791
MaeI	CTAG	1 cut(s)	1014
MalI	GATC	5 cut(s)	6, 480, 489, 897, 969
MboI	GATC	5 cut(s)	4, 478, 487, 895, 967
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	4 cut(s)	478, 487, 895, 967
MhlI	GDGCHC	4 cut(s)	470, 697, 845, 860
MluCI	AATT	3 cut(s)	11, 311, 492
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	39, 635
MroI	TCCGGA	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	2 cut(s)	255, 852
MspCI	CTTAAG	1 cut(s)	851
MspI	CCGG	5 cut(s)	165, 566, 722, 751, 993
MspR9I	CCNGG	3 cut(s)	722, 752, 994
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	610
MvnI	CGCG	2 cut(s)	91, 596
MwoI	GCNNNNNNNGC	8 cut(s)	58, 61, 115, 158, 591, 593, 602, 941
NaeI	GCCGGC	1 cut(s)	166
NarI	GGCGCC	1 cut(s)	116
NciI	CCSGG	3 cut(s)	722, 752, 994
NdeII	GATC	5 cut(s)	4, 478, 487, 895, 967
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	20, 52, 530, 875
NlaIV	GGNNCC	4 cut(s)	117, 169, 741, 777
PaqCI	CACCTGC	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	610
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	720
PkrI	GCNGC	6 cut(s)	54, 63, 160, 163, 273, 641
PleI	GAGTC	2 cut(s)	39, 634
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	2 cut(s)	39, 634
PpuMI	RGGWCCY	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	944
PspN4I	GGNNCC	4 cut(s)	117, 169, 741, 777
PspPI	GGNCC	2 cut(s)	250, 739
PspPPI	RGGWCCY	1 cut(s)	739
PsuI	RGATCY	4 cut(s)	478, 487, 895, 967
RsaI	GTAC	2 cut(s)	911, 1001
RsaNI	GTAC	2 cut(s)	910, 1000
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	255, 852
SatI	GCNGC	6 cut(s)	53, 62, 159, 162, 272, 640
Sau3AI	GATC	5 cut(s)	4, 478, 487, 895, 967
Sau96I	GGNCC	2 cut(s)	250, 739
SchI	GAGTC	2 cut(s)	39, 635
ScrFI	CCNGG	3 cut(s)	722, 752, 994
SduI	GDGCHC	4 cut(s)	470, 697, 845, 860
SfaNI	GCATC	3 cut(s)	61, 421, 791
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	2 cut(s)	250, 739
SmlI	CTYRAG	2 cut(s)	32, 851
SmoI	CTYRAG	2 cut(s)	32, 851
Sse9I	AATT	3 cut(s)	11, 311, 492
SsiI	CCGC	3 cut(s)	150, 272, 787
SspDI	GGCGCC	1 cut(s)	115
SspMI	CTAG	1 cut(s)	1014
StyD4I	CCNGG	3 cut(s)	720, 750, 992
StyI	CCWWGG	1 cut(s)	771
TaqI	TCGA	2 cut(s)	242, 261
TasI	AATT	3 cut(s)	11, 311, 492
TatI	WGTACW	2 cut(s)	909, 999
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	255, 852
Tru9I	TTAA	2 cut(s)	255, 852
TscAI	CASTG	4 cut(s)	232, 309, 682, 845
TseI	GCWGC	5 cut(s)	52, 61, 158, 161, 639
TspDTI	ATGAA	6 cut(s)	5, 366, 429, 515, 683, 860
TspRI	CASTG	4 cut(s)	232, 309, 682, 845
Vha464I	CTTAAG	1 cut(s)	851
VpaK11BI	GGWCC	2 cut(s)	250, 739
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.