Rh5CG224500

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004804
Physical Location & Seq
Reverse (-)
22904125 .. 22904445
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG224500.1

Sequence Viewer

Length: 321 bp
ATGGTTCATGCCACCTGCTATGGTAATCCCCTTGCGAAGGGTATTCCAGAGGGGGATTGGTTCTGCTCGCAATACTCTCGTTCTTCTGAGGCTTCACAGTCCAATGAGTCTTTCTCTTGCTGTCTGTGTCCCGGCAAAGGTGGAGCAATGAAGGCAACTGGAGATGGCCGGTGGGCACATATCGTGTGTGCTCTTTATGTTCCTGGGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGGTTCCGAAGAGGAGGTGGAAAGAGAGGTGTTATGTTTGCAAGATTGCAAGTGGGTGTGCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

106

Amino Acids

11.55

Weight (kDa)

8.55

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HC5HC2H_2 PF13832 39 - 106 1.9e-19 PHD-zinc-finger like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 166
AfiI CCNNNNNNNGG 2 cut(s) 37, 137
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
Alw21I GWGCWC 1 cut(s) 193
AoxI GGCC 2 cut(s) 166, 229
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 2 cut(s) 132, 224
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 193
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 2 cut(s) 132, 224
BfuAI ACCTGC 1 cut(s) 23
Bme1390I CCNGG 3 cut(s) 132, 204, 224
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 222, 258
BmrFI CCNGG 3 cut(s) 132, 204, 224
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 132, 224
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 137
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 37, 137
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 178
BshFI GGCC 2 cut(s) 168, 231
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 3 cut(s) 132, 169, 224
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 37, 137
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 168, 231
Bsp1286I GDGCHC 2 cut(s) 178, 193
BspANI GGCC 2 cut(s) 168, 231
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 222, 258
BspMI ACCTGC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 87
BstENI CCTNNNNNAGG 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 130, 202, 222
BstSLI GKGCMC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 168, 231
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 1 cut(s) 8
CviJI RGCY 3 cut(s) 92, 168, 231
CviKI_1 RGCY 3 cut(s) 92, 168, 231
DdeI CTNAG 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 11
FaiI YATR 7 cut(s) 9, 21, 180, 198, 288, 317, 319
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 168, 231
HapII CCGG 3 cut(s) 132, 169, 224
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 107
HpaII CCGG 3 cut(s) 132, 169, 224
Hpy188I TCNGA 2 cut(s) 88, 261
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 31, 145, 221
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 294, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 11
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 28, 60, 144, 145, 182, 189, 216, 237
MboII GAAGA 2 cut(s) 75, 274
MhlI GDGCHC 2 cut(s) 178, 193
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 6 cut(s) 43, 82, 229, 258, 261, 273
MseI TTAA 1 cut(s) 216
MspI CCGG 3 cut(s) 132, 169, 224
MspR9I CCNGG 3 cut(s) 132, 204, 224
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 2 cut(s) 132, 224
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 222, 258
NmeAIII GCCGAG 1 cut(s) 257
PaqCI CACCTGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 222, 258
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
SaqAI TTAA 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 132, 204, 224
SduI GDGCHC 2 cut(s) 178, 193
SetI ASST 5 cut(s) 17, 142, 258, 272, 284
SinI GGWCC 1 cut(s) 220
StyD4I CCNGG 3 cut(s) 130, 202, 222
TaaI ACNGT 1 cut(s) 99
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.