Rorug05G0112800

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004804
Physical Location & Seq
Reverse (-)
10061855 .. 10062541
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0112800.1

Sequence Viewer

Length: 687 bp
ATGGCTTCTCTTGAGGAAGTTAATGCAAGCTTTCAAGTGTCTCTTGCACTTGCAGGAGATGATGTGATTAATATCACGATGCTGTCCCGTGGAAAAACTCGACGAAATTCTCAAGCATACTTGTTCGGAAGATCCCTCTCACCCAAGCCTGTGGAGATCAATGATCTTCGCCGTCACTTTCGTCAGATTTGGGTGTTAGAAAAAAACTTCAAAATCCAGGAAAGATCAAATTCCCTTTTCCTCTTCTCTTTTGATCACCGTAGCGACCTATGTAAGGTCATCAGAGGAAGGCCTTGGAACTTTGCTCAAGCTCCAATGGTGTTGATGGAATATGATGGTGTGACACCAATTGAAAAGATCCCTCTGAATCTGCTATACTATTGGGTACGTATCACTCATATCCCTCCTGCGTATGAGAAAAAAGAAACTATCATGGATATTGCTACTGTGGCTGGTCATCCCCTTGAACTGGATGAAAGGCTCTTTAAAAACAAAGGGGAAATAGGGGTTAGGGTTAGCCATGATATCCTGAAGACAATTTTTTTGGAAATAAAAAAGCTGAAAATTGATGTTGGGGTTGAAGAAGTGATTTACTACCACTTTGACAATCTCTTTGGACGTTGTGAGGATTGCTTGCTAGTCTTCTATCCTACAGGTTCGTGTTCTGCTGCTGGAATTAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

228

Amino Acids

26.3

Weight (kDa)

8.59

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 111 6.6e-13 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 126, 352
AcsI RAATTY 2 cut(s) 106, 229
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 274, 469
AgsI TTSAA 5 cut(s) 35, 211, 353, 467, 581
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 3 cut(s) 30, 311, 559
AluI AGCT 3 cut(s) 30, 311, 559
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 126, 352
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 2 cut(s) 106, 229
ArsI GACNNNNNNTTYG 4 cut(s) 526, 558, 596, 628
AseI ATTAAT 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 132, 248
BbsI GAAGAC 2 cut(s) 539, 634
BbvI GCAGC 1 cut(s) 655
BccI CCATC 2 cut(s) 319, 329
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 651
BisI GCNGC 1 cut(s) 669
BlsI GCNGC 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 539, 634
BpuEI CTTGAG 3 cut(s) 32, 96, 291
BsaAI YACGTR 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 88, 293
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 469
Bse1I ACTGG 1 cut(s) 474
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 88, 293
BseGI GGATG 2 cut(s) 457, 478
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 274, 469
BseNI ACTGG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 655
BshFI GGCC 1 cut(s) 292
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 274, 469
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 6 cut(s) 131, 156, 163, 224, 253, 357
BspANI GGCC 1 cut(s) 292
BspPI GGATC 2 cut(s) 126, 352
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 88, 293
BssMI GATC 6 cut(s) 131, 156, 163, 224, 253, 357
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 260, 448
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 28, 635
BstDSI CCRYGG 1 cut(s) 88
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 457, 478
BstKTI GATC 6 cut(s) 134, 159, 166, 227, 256, 360
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 6 cut(s) 131, 156, 163, 224, 253, 357
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 651
BstSNI TACGTA 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 655
BstV2I GAAGAC 2 cut(s) 539, 634
BstX2I RGATCY 2 cut(s) 131, 357
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 2 cut(s) 131, 357
BsuRI GGCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 457, 478
Cac8I GCNNGC 2 cut(s) 28, 635
Csp6I GTAC 1 cut(s) 386
CviAII CATG 2 cut(s) 433, 521
CviJI RGCY 9 cut(s) 5, 30, 148, 292, 311, 452, 481, 519, 559
CviKI_1 RGCY 9 cut(s) 5, 30, 148, 292, 311, 452, 481, 519, 559
CviQI GTAC 1 cut(s) 386
DpnI GATC 6 cut(s) 133, 158, 165, 226, 255, 359
DpnII GATC 6 cut(s) 131, 156, 163, 224, 253, 357
DraI TTTAAA 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 292
Eco32I GATATC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 551
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 2 cut(s) 436, 524
FaiI YATR 8 cut(s) 118, 271, 333, 376, 399, 414, 434, 522
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 432, 520
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 669
FokI GGATG 2 cut(s) 444, 485
Fsp4HI GCNGC 1 cut(s) 669
FspBI CTAG 1 cut(s) 638
GluI GCNGC 1 cut(s) 669
HaeIII GGCC 1 cut(s) 292
Hin1II CATG 2 cut(s) 436, 524
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 1 cut(s) 367
HphI GGTGA 2 cut(s) 132, 248
Hpy188I TCNGA 4 cut(s) 128, 186, 284, 366
Hpy188III TCNNGA 3 cut(s) 11, 76, 529
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 2 cut(s) 260, 448
HpyCH4IV ACGT 2 cut(s) 388, 619
HpyCH4V TGCA 3 cut(s) 26, 47, 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpySE526I ACGT 2 cut(s) 388, 619
Hsp92II CATG 2 cut(s) 436, 524
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 6 cut(s) 131, 156, 163, 224, 253, 357
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 388, 619
MaeIII GTNAC 2 cut(s) 173, 340
MalI GATC 6 cut(s) 133, 158, 165, 226, 255, 359
MboI GATC 6 cut(s) 131, 156, 163, 224, 253, 357
MboII GAAGA 6 cut(s) 141, 158, 235, 544, 593, 634
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 2 cut(s) 131, 357
MluCI AATT 6 cut(s) 106, 229, 348, 537, 564, 675
MnlI CCTC 7 cut(s) 7, 146, 251, 278, 372, 414, 619
MseI TTAA 4 cut(s) 21, 69, 486, 678
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 449
NdeII GATC 6 cut(s) 131, 156, 163, 224, 253, 357
NlaIII CATG 2 cut(s) 436, 524
NmuCI GTSAC 2 cut(s) 173, 340
PceI AGGCCT 1 cut(s) 292
PfeI GAWTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 1 cut(s) 670
Ppu21I YACGTR 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PsuI RGATCY 2 cut(s) 131, 357
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 4 cut(s) 21, 69, 486, 678
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 6 cut(s) 131, 156, 163, 224, 253, 357
ScrFI CCNGG 1 cut(s) 218
SetI ASST 8 cut(s) 32, 270, 279, 313, 391, 561, 622, 658
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 651
SmlI CTYRAG 3 cut(s) 11, 111, 306
SmoI CTYRAG 3 cut(s) 11, 111, 306
SnaBI TACGTA 1 cut(s) 389
Sse9I AATT 6 cut(s) 106, 229, 348, 537, 564, 675
SseBI AGGCCT 1 cut(s) 292
SspMI CTAG 1 cut(s) 638
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 260, 448
TaiI ACGT 2 cut(s) 391, 622
TaqI TCGA 1 cut(s) 100
TasI AATT 6 cut(s) 106, 229, 348, 537, 564, 675
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 4 cut(s) 21, 69, 486, 678
Tru9I TTAA 4 cut(s) 21, 69, 486, 678
TseFI GTSAC 2 cut(s) 173, 340
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 2 cut(s) 173, 340
TspDTI ATGAA 1 cut(s) 489
VspI ATTAAT 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 2 cut(s) 106, 229
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.