Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Forward (+)

71255348 .. 71257171

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGGCAACTGGAGATGGCCGGTGGGCACATATCGTGTGTGTTCTTTATGTTCCTGAGGTGTTCTTTAAGGACCTGCAAGGCCGAGAGGGGATTGATTGCTCCAAGGTTCCCAAGAGAAGGTGGAAAGAGAGGTGTTATGTCTGCAAGAGTGGAAGTGGATGTGCTATTCAGTGCTCGGAGATCAAATGCCCTTTGGCGTTCCATGTGACTTGTGGGTTGAATGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGGTGATATTATAGCTGGGTTTTGCAGAACCTACACTGATTTGTTGGAAAAGGAATTTGAGAAGCACTGTCCCTGTCTAGTTCAATTCCGTATGGTTCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

121

Amino Acids

13.91

Weight (kDa)

7.97

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	1 - 86	3.3e-24	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	11 - 96	3.1e-17	PHD-like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	223, 344
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	19, 82
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	16
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	21, 84
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	21, 84
Bsp1286I	GDGCHC	2 cut(s)	31, 179
Bsp143I	GATC	2 cut(s)	183, 229
BspANI	GGCC	2 cut(s)	21, 84
BspCNI	CTCAG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	183, 229
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	186, 232
BstMBI	GATC	2 cut(s)	183, 229
BstSLI	GKGCMC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	21, 84
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	3 cut(s)	179, 294, 325
BveI	ACCTGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	206, 359
CviJI	RGCY	3 cut(s)	21, 84, 275
CviKI_1	RGCY	3 cut(s)	21, 84, 275
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	185, 231
DpnII	GATC	2 cut(s)	183, 229
EaeI	YGGCCR	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	209, 362
FaiI	YATR	8 cut(s)	33, 51, 141, 207, 239, 272, 353, 360
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	2 cut(s)	205, 358
FokI	GGATG	1 cut(s)	174
FspBI	CTAG	1 cut(s)	338
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	21, 84
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	209, 362
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	56, 359
HpyAV	CCTTC	4 cut(s)	114, 245, 249, 253
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	4 cut(s)	79, 147, 237, 285
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	209, 362
Kzo9I	GATC	2 cut(s)	183, 229
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	35, 69, 89, 232, 261, 346
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	185, 231
MboI	GATC	2 cut(s)	183, 229
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	31, 179
MluCI	AATT	2 cut(s)	314, 344
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	52, 82, 126, 220
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	183, 229
NlaIII	CATG	2 cut(s)	209, 362
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	183, 229
Sau96I	GGNCC	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	31, 179
SetI	ASST	7 cut(s)	63, 78, 111, 125, 137, 277, 293
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	314, 344
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	329
TasI	AATT	2 cut(s)	314, 344
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	3 cut(s)	179, 301, 332
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	17, 347
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	179, 301, 332
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.