Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Reverse (-)

22965875 .. 22966291

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG203300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTTCATGCCACCTGCTATGGTAATCCCCTTGTAAAGGGTATTCCAGAGGGGGATTGGTTCTGCTCGCAATGCTCCGGTTCTTCTGAGGCTTCACAGTCCAATGTGTCTTTCTCTTGCTGTCTGTGTCCCGGCAAAGGTGGAGCAATGAAGGCAACTGGAGATGGCCGGTGGGCACATATCGTGTGTGCTCTTTATGTTCCTGGGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGGTTCCGAAGACGAGGTGGAAAGAGAGGTGTTATGTTTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTCGGAAATCAAATGTCCTTTAGCGTTCCATGTGACTTGTGGTTTCAACGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

138

Amino Acids

14.96

Weight (kDa)

7.4

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	39 - 133	2.6e-29	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	60 - 133	2.3e-16	PHD-like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	37, 137
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
Alw21I	GWGCWC	2 cut(s)	193, 326
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	2 cut(s)	166, 229
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	2 cut(s)	132, 224
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	193, 326
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	132, 224
BfuAI	ACCTGC	1 cut(s)	23
Bme1390I	CCNGG	3 cut(s)	132, 204, 224
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	222, 258
BmrFI	CCNGG	3 cut(s)	132, 204, 224
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	132, 224
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 137
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	2 cut(s)	77, 153
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	37, 137
BseMI	GCAATG	2 cut(s)	77, 153
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	178
BshFI	GGCC	2 cut(s)	168, 231
BsiHKAI	GWGCWC	2 cut(s)	193, 326
BsiSI	CCGG	4 cut(s)	78, 132, 169, 224
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	37, 137
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	168, 231
Bsp1286I	GDGCHC	3 cut(s)	178, 193, 326
Bsp143I	GATC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	168, 231
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	222, 258
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	77, 153
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 152
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	3 cut(s)	130, 202, 222
BstSLI	GKGCMC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	168, 231
BtsIMutI	CAGTG	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	2 cut(s)	8, 353
CviJI	RGCY	3 cut(s)	92, 168, 231
CviKI_1	RGCY	3 cut(s)	92, 168, 231
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	11, 356
FaiI	YATR	7 cut(s)	9, 21, 180, 198, 288, 354, 386
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	7, 352
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	168, 231
HapII	CCGG	4 cut(s)	78, 132, 169, 224
Hin1II	CATG	2 cut(s)	11, 356
HpaII	CCGG	4 cut(s)	78, 132, 169, 224
Hpy188I	TCNGA	3 cut(s)	88, 261, 328
Hpy188III	TCNNGA	1 cut(s)	47
HpyAV	CCTTC	6 cut(s)	145, 221, 392, 396, 400, 404
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	294, 302, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 152
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	11, 356
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	80, 143
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	75, 274
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	3 cut(s)	178, 193, 326
MnlI	CCTC	6 cut(s)	43, 82, 229, 261, 273, 367
MseI	TTAA	1 cut(s)	216
MspI	CCGG	4 cut(s)	78, 132, 169, 224
MspR9I	CCNGG	3 cut(s)	132, 204, 224
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	72, 152
NciI	CCSGG	2 cut(s)	132, 224
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	11, 356
NlaIV	GGNNCC	2 cut(s)	222, 258
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	222, 258
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	132, 204, 224
SduI	GDGCHC	3 cut(s)	178, 193, 326
SetI	ASST	5 cut(s)	17, 142, 258, 272, 284
SinI	GGWCC	1 cut(s)	220
StyD4I	CCNGG	3 cut(s)	130, 202, 222
TaaI	ACNGT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.