Rh5AG204900

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004804
Physical Location & Seq
Reverse (-)
24210828 .. 24212170
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG204900.1

Sequence Viewer

Length: 990 bp
ATGGATCCCCACTTCCATGGCCTACCTCCCCTCAAAAGATTCAGACTCATGCAGCAGCAACAGAGCCAGCACCGCCACGACGTCGTTTTGCCCGTTCTTCCGGCGAAGAAGAGAAAGGAGACGAGGGAAAAACCCATTCTCCCTGACCCAACTCCCGCCGCCTTCGCCGTCTCCACCTATTCCTTGCCGGCGAAGAAGAGGGTGTGGGCGCTTCCGCCGGATTTAGTCCCCGAGAAGCCGGTTTCGGAGTTGGATTTGAATCTTGAGTACAAGCCGGATCTCGGGGAAGAGTCCGAGGCTGCAGTGGGGAAACTTGAAGAATGCACGGAAGGTGTTTGTGAAAATGCCTCAGAGAAGAGCCCGGAAGATTTGGGCGGCGAGGAAGAGTGTGAGGATGAGGATGAGGATGGGATTGTTTGTGCTGTTTGTAAGAGTACAGATGGAGATCCGTCGGATCCGATTGTGTTCTGTGACGGGTGTGATCTGATGGTTCATGCCACCTGCTATGGTAATCCCCTTGTAAAGGGTATTCCGGAGGGGGATTGGTTCTGCTTGCAATGCTCCGGTTCTTCTGAGGCTTCACAGTCCAATGAGTCCTTCTCTTGCTGTCTGTGTCCTGGCAAAGGTGGAGCAATGAAGCCAACTGGAGATGGCCGGTGGGCACATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCCAAGGTTCCCAAGAGGAGGTGGAAAGAGAGGTGTTATGTCTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTCGGAGATCAAATGCCCTTTGGCATTCCATGTGACTTGTGGGTTGAATGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGGTGATATTGTAGCTGGGTTTTGCAGAACCCACACTGATTTGTGGGAAGAGCAACAAGAATCTGGGAAGTTCAAGATTGTGGCTAGAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

329

Amino Acids

36.39

Weight (kDa)

5.01

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 140 - 187 2.4e-10 PHD-finger
PHD_2 PF13831 152 - 187 2.4e-08 PHD-finger
zf-HC5HC2H_2 PF13832 201 - 299 1.3e-29 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 222 - 310 1.2e-17 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 509
AccII CGCG 1 cut(s) 677
AccIII TCCGGA 1 cut(s) 532
AciI CCGC 5 cut(s) 73, 156, 159, 215, 375
AclWI GGATC 6 cut(s) 12, 285, 440, 449, 462, 870
AcoI YGGCCR 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 269, 436, 878
AfiI CCNNNNNNNGG 4 cut(s) 281, 523, 623, 753
AgsI TTSAA 4 cut(s) 259, 317, 856, 967
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 1 cut(s) 908
AluI AGCT 1 cut(s) 908
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 2 cut(s) 113, 175
AlwI GGATC 6 cut(s) 12, 285, 440, 449, 462, 870
Ama87I CYCGRG 2 cut(s) 230, 281
Aor13HI TCCGGA 1 cut(s) 532
AoxI GGCC 3 cut(s) 19, 652, 715
ApeKI GCWGC 3 cut(s) 52, 55, 299
AspLEI GCGC 3 cut(s) 211, 677, 679
AspS9I GGNCC 1 cut(s) 706
AsuC2I CCSGG 2 cut(s) 362, 710
AsuHPI GGTGA 1 cut(s) 908
AvaI CYCGRG 2 cut(s) 230, 281
AvaII GGWCC 1 cut(s) 706
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 664
BamHI GGATCC 2 cut(s) 4, 454
BanII GRGCYC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 3 cut(s) 64, 67, 286
BccI CCATC 4 cut(s) 401, 434, 481, 644
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 2 cut(s) 362, 710
BcoDI GTCTC 2 cut(s) 113, 175
BfaI CTAG 1 cut(s) 978
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 5 cut(s) 53, 56, 159, 300, 376
BlsI GCNGC 5 cut(s) 54, 57, 160, 301, 377
Bme1390I CCNGG 3 cut(s) 362, 618, 710
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 2 cut(s) 230, 281
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 4 cut(s) 6, 456, 708, 744
BmrFI CCNGG 3 cut(s) 362, 618, 710
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 362, 710
BsaBI GATNNNNATC 2 cut(s) 258, 444
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 16, 294, 738
BsaWI WCCGGW 2 cut(s) 532, 563
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 4 cut(s) 281, 523, 623, 753
Bse118I RCCGGY 3 cut(s) 187, 238, 654
Bse1I ACTGG 1 cut(s) 649
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 2 cut(s) 563, 639
Bse8I GATNNNNATC 2 cut(s) 258, 444
BseAI TCCGGA 1 cut(s) 532
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 16, 294, 738
BseGI GGATG 3 cut(s) 400, 406, 412
BseJI GATNNNNATC 2 cut(s) 258, 444
BseLI CCNNNNNNNGG 4 cut(s) 281, 523, 623, 753
BseMI GCAATG 2 cut(s) 563, 639
BseMII CTCAG 3 cut(s) 363, 564, 681
BseNI ACTGG 1 cut(s) 649
BsePI GCGCGC 1 cut(s) 675
BseRI GAGGAG 1 cut(s) 766
BseSI GKGCMC 1 cut(s) 664
BseXI GCAGC 3 cut(s) 64, 67, 286
BseYI CCCAGC 1 cut(s) 908
Bsh1236I CGCG 1 cut(s) 677
BshFI GGCC 3 cut(s) 21, 654, 717
BsiHKAI GWGCWC 1 cut(s) 812
BsiHKCI CYCGRG 2 cut(s) 230, 281
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 4 cut(s) 281, 523, 623, 753
BsmAI GTCTC 2 cut(s) 113, 175
BsmBI CGTCTC 2 cut(s) 113, 175
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 326, 833
BsnI GGCC 3 cut(s) 21, 654, 717
BsoBI CYCGRG 2 cut(s) 230, 281
Bsp1286I GDGCHC 3 cut(s) 362, 664, 812
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 5 cut(s) 73, 156, 159, 215, 375
BspANI GGCC 3 cut(s) 21, 654, 717
BspCNI CTCAG 3 cut(s) 362, 565, 682
BspEI TCCGGA 1 cut(s) 532
BspFNI CGCG 1 cut(s) 677
BspLI GGNNCC 4 cut(s) 6, 456, 708, 744
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 6 cut(s) 12, 285, 440, 449, 462, 870
BspQI GCTCTTC 2 cut(s) 350, 936
BsrDI GCAATG 2 cut(s) 563, 639
BsrFI RCCGGY 3 cut(s) 187, 238, 654
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 3 cut(s) 187, 238, 654
BssECI CCNNGG 3 cut(s) 16, 294, 738
BssHII GCGCGC 1 cut(s) 675
BssMI GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 16, 738
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 6 cut(s) 104, 191, 282, 350, 378, 936
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 4 cut(s) 68, 189, 554, 677
BstDEI CTNAG 3 cut(s) 349, 573, 690
BstDSI CCRYGG 1 cut(s) 16
BstENI CCTNNNNNAGG 2 cut(s) 521, 621
BstF5I GGATG 3 cut(s) 400, 406, 412
BstFNI CGCG 1 cut(s) 677
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 3 cut(s) 211, 677, 679
BstKTI GATC 7 cut(s) 7, 280, 448, 457, 484, 819, 865
BstMAI GTCTC 2 cut(s) 113, 175
BstMBI GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
BstMWI GCNNNNNNNGC 3 cut(s) 72, 164, 558
BstNI CCWGG 1 cut(s) 618
BstSCI CCNGG 3 cut(s) 360, 616, 708
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 664
BstUI CGCG 1 cut(s) 677
BstV1I GCAGC 3 cut(s) 64, 67, 286
BstX2I RGATCY 5 cut(s) 4, 277, 445, 454, 862
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 5 cut(s) 4, 277, 445, 454, 862
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 3 cut(s) 21, 654, 717
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 400, 406, 412
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 309, 812, 927
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 68, 189, 554, 677
CfoI GCGC 3 cut(s) 211, 677, 679
Cfr10I RCCGGY 3 cut(s) 187, 238, 654
Cfr13I GGNCC 1 cut(s) 706
Csp6I GTAC 3 cut(s) 268, 435, 877
CviAII CATG 4 cut(s) 17, 49, 494, 839
CviQI GTAC 3 cut(s) 268, 435, 877
DdeI CTNAG 3 cut(s) 349, 573, 690
DpnI GATC 7 cut(s) 6, 279, 447, 456, 483, 818, 864
DpnII GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 6 cut(s) 104, 191, 282, 350, 378, 936
EarI CTCTTC 6 cut(s) 104, 191, 282, 350, 378, 936
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 16, 738
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 706
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 230, 281
EcoNI CCTNNNNNAGG 2 cut(s) 521, 621
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 16, 738
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 16, 738
Esp3I CGTCTC 2 cut(s) 113, 175
FaeI CATG 4 cut(s) 20, 52, 497, 842
FaiI YATR 9 cut(s) 18, 50, 495, 507, 666, 684, 774, 840, 872
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 16, 48, 493, 838
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 5 cut(s) 53, 56, 159, 300, 376
FokI GGATG 3 cut(s) 407, 413, 419
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 5 cut(s) 53, 56, 159, 300, 376
FspBI CTAG 1 cut(s) 978
GlaI GCGC 3 cut(s) 210, 676, 678
GluI GCNGC 5 cut(s) 53, 56, 159, 300, 376
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 3 cut(s) 21, 654, 717
HhaI GCGC 3 cut(s) 211, 677, 679
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 4 cut(s) 20, 52, 497, 842
Hin6I GCGC 3 cut(s) 209, 675, 677
HinP1I GCGC 3 cut(s) 209, 675, 677
HinfI GANTC 6 cut(s) 39, 45, 259, 290, 593, 953
HphI GGTGA 1 cut(s) 908
Hpy188I TCNGA 9 cut(s) 44, 247, 295, 352, 454, 459, 486, 574, 814
Hpy188III TCNNGA 4 cut(s) 263, 533, 689, 967
Hpy99I CGWCG 3 cut(s) 83, 86, 454
HpyAV CCTTC 7 cut(s) 172, 323, 607, 707, 878, 882, 886
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 8 cut(s) 52, 302, 324, 556, 780, 788, 870, 918
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 164, 558
HpyF3I CTNAG 3 cut(s) 349, 573, 690
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 4 cut(s) 20, 52, 497, 842
HspAI GCGC 3 cut(s) 209, 675, 677
Kpn2I TCCGGA 1 cut(s) 532
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
LguI GCTCTTC 2 cut(s) 350, 936
LmnI GCTCC 3 cut(s) 566, 629, 740
Lsp1109I GCAGC 3 cut(s) 64, 67, 286
MaeI CTAG 1 cut(s) 978
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 470, 841
MalI GATC 7 cut(s) 6, 279, 447, 456, 483, 818, 864
MboI GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
MflI RGATCY 5 cut(s) 4, 277, 445, 454, 862
MhlI GDGCHC 3 cut(s) 362, 664, 812
MlyI GAGTC 3 cut(s) 39, 299, 602
MmeI TCCRAC 2 cut(s) 231, 432
MroI TCCGGA 1 cut(s) 532
MroNI GCCGGC 1 cut(s) 187
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 15
MspR9I CCNGG 3 cut(s) 362, 618, 710
Mva1269I GAATGC 2 cut(s) 326, 833
MvaI CCWGG 1 cut(s) 618
MvnI CGCG 1 cut(s) 677
MwoI GCNNNNNNNGC 3 cut(s) 72, 164, 558
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 2 cut(s) 362, 710
NcoI CCATGG 1 cut(s) 16
NdeII GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 4 cut(s) 20, 52, 497, 842
NlaIV GGNNCC 4 cut(s) 6, 456, 708, 744
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 2 cut(s) 470, 841
PaqCI CACCTGC 1 cut(s) 509
PauI GCGCGC 1 cut(s) 675
PciSI GCTCTTC 2 cut(s) 350, 936
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 2 cut(s) 326, 833
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 39, 259, 953
PkrI GCNGC 5 cut(s) 54, 57, 160, 301, 377
PleI GAGTC 3 cut(s) 39, 298, 601
PpsI GAGTC 3 cut(s) 39, 298, 601
PpuMI RGGWCCY 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 6, 456, 708, 744
PspPI GGNCC 1 cut(s) 706
PspPPI RGGWCCY 1 cut(s) 706
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 5 cut(s) 4, 277, 445, 454, 862
PteI GCGCGC 1 cut(s) 675
RsaI GTAC 3 cut(s) 269, 436, 878
RsaNI GTAC 3 cut(s) 268, 435, 877
RseI CAYNNNNRTG 1 cut(s) 15
SapI GCTCTTC 2 cut(s) 350, 936
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 5 cut(s) 53, 56, 159, 300, 376
Sau3AI GATC 7 cut(s) 4, 277, 445, 454, 481, 816, 862
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 3 cut(s) 39, 299, 602
ScrFI CCNGG 3 cut(s) 362, 618, 710
SduI GDGCHC 3 cut(s) 362, 664, 812
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 5 cut(s) 73, 156, 159, 215, 375
SspMI CTAG 1 cut(s) 978
StyD4I CCNGG 3 cut(s) 360, 616, 708
StyI CCWWGG 2 cut(s) 16, 738
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 84
TatI WGTACW 3 cut(s) 267, 434, 876
TauI GCSGC 2 cut(s) 161, 378
TfiI GAWTC 3 cut(s) 39, 259, 953
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 3 cut(s) 309, 812, 934
TseFI GTSAC 2 cut(s) 470, 841
TseI GCWGC 3 cut(s) 52, 55, 299
Tsp45I GTSAC 2 cut(s) 470, 841
TspDTI ATGAA 2 cut(s) 482, 650
TspGWI ACGGA 2 cut(s) 341, 438
TspRI CASTG 3 cut(s) 309, 812, 934
VpaK11BI GGWCC 1 cut(s) 706
XagI CCTNNNNNAGG 2 cut(s) 521, 621
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XspI CTAG 1 cut(s) 978
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.