Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004804

Physical Location & Seq

Genomic Coordinates Forward (+)

20306587 .. 20307308

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1118000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTCTTTTGCCCCCGTCGCGCCTTCCAGCAAAGAAGCGAAAGACGCCGAGAAACCAACTCGTTCTCCTTGACCCCACCGCCTCTGCTGTTGCCGGATCCACCTATTCCCTACCTGCCAAGAAAAGGGTTTGGGCGTTTCAGCCCAATTTTGGAGAAATTGGAAGAAGAGAATGGTGAAGCTGAAAATGGTTGCAATGAAGATATTGAAAATACCCAAGAGGAGAAAAGCCAAGAAATCGCAGGGGATGGAGAGTGCAATAAAGAAGAAGAAGATGATGCTGATGATGGGATTGTTTGTTTTGTTTGTCAGAGCACAGATGGAGATCCATCAGATCCAATTGTCTTCTGTGATGGGTGTAATCTGATGGTTCATGCCTCCTGCTATGGCAATCCACTCGTAAAGGGTATTCCGGAAGGTGATTGGTACTGCGCCCAATGCGCATTTTCTACTGTGCATTCCCAATCCAATGAGTCCTGTTCTTGCTGCTTATGTCTTGTTAAAGAAGGGGCAATGAAGCCCACCGGAGAAGGGAGGTGGGCACACATTGTGTGTGCGTTTTATGTCTCGGAAGTGTTCTTCAAGGACCCTGAAGGCCGGGAGGGGATTGATTGCTCCAAGGTTCCGAAAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

213

Amino Acids

23.6

Weight (kDa)

4.6

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	100 - 147	1.4e-10	PHD-finger
PHD_2	PF13831	112 - 148	1.2e-11	PHD-finger
zf-HC5HC2H_2	PF13832	161 - 211	5.2e-11	PHD-zinc-finger like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14740 AT3G14740
fragaria_vesca	FvH4_3g17540 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570 FvH4_3g17570
malus_domestica	MD03G1251300.v1.1 MD04G1118000.v1.1
prunus_persica	Prupe.4G155300_v2.0.a1
pyrus_communis	pycom03g19870
rosa_chinensis	RchiOBHm_Chr5g0029121 RchiOBHm_Chr5g0029161 RchiOBHm_Chr5g0029281
rosa_laevigata	RLG00000033147 RLG00000033149
rosa_multiflora	Rmu_co8077588.1_g000001 Rmu_sc0012347.1_g000003 Rmu_sc0025685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050720 Rroxscaffold_1G00050750
rosa_rugosa	Rorug05G0112800
rosa_samantha	Rh5AG204700 Rh5AG204900 Rh5BG203300 Rh5BG203600 Rh5CG224400 Rh5CG224500 Rh5DG207000
rosa_wichuraiana	Rw5G018580 Rw5G018630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	123
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	2 cut(s)	80, 634
AclWI	GGATC	4 cut(s)	92, 105, 320, 329
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	46
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	125, 151, 531
AgsI	TTSAA	2 cut(s)	209, 583
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	4 cut(s)	92, 105, 320, 329
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	1 cut(s)	486
AspLEI	GCGC	3 cut(s)	23, 434, 443
AspS9I	GGNCC	1 cut(s)	586
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	188, 431
AvaII	GGWCC	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	473
BccI	CCATC	6 cut(s)	242, 281, 314, 337, 347, 361
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	571
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	3 cut(s)	99, 588, 624
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	618
BsaWI	WCCGGW	2 cut(s)	412, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 151, 531
Bse3DI	GCAATG	2 cut(s)	202, 519
Bse8I	GATNNNNATC	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	125, 151, 531
BseMI	GCAATG	2 cut(s)	202, 519
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	4 cut(s)	95, 413, 525, 598
BslI	CCNNNNNNNGG	3 cut(s)	125, 151, 531
BsmAI	GTCTC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	317, 544
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	97, 325, 334
BspACI	CCGC	2 cut(s)	80, 634
BspANI	GGCC	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	99, 588, 624
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	4 cut(s)	92, 105, 320, 329
BsrDI	GCAATG	2 cut(s)	202, 519
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	3 cut(s)	97, 325, 334
BssNI	GRCGYC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	3 cut(s)	23, 434, 443
BstKTI	GATC	3 cut(s)	100, 328, 337
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	3 cut(s)	97, 325, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 45, 438, 440
BstSCI	CCNGG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	3 cut(s)	97, 325, 334
BstYI	RGATCY	3 cut(s)	97, 325, 334
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	123
CfoI	GCGC	3 cut(s)	23, 434, 443
Cfr13I	GGNCC	1 cut(s)	586
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	5 cut(s)	144, 182, 231, 520, 597
CviKI_1	RGCY	5 cut(s)	144, 182, 231, 520, 597
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	3 cut(s)	99, 327, 336
DpnII	GATC	3 cut(s)	97, 325, 334
DraIII	CACNNNGTG	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	1 cut(s)	377
FaiI	YATR	4 cut(s)	375, 387, 493, 564
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	487
FspAI	RTGCGCAY	1 cut(s)	442
FspI	TGCGCA	1 cut(s)	442
GlaI	GCGC	3 cut(s)	22, 433, 442
GluI	GCNGC	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	597
HapII	CCGG	4 cut(s)	95, 413, 525, 598
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	3 cut(s)	23, 434, 443
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	3 cut(s)	21, 432, 441
HinP1I	GCGC	3 cut(s)	21, 432, 441
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	4 cut(s)	95, 413, 525, 598
HphI	GGTGA	2 cut(s)	188, 431
Hpy188I	TCNGA	5 cut(s)	312, 334, 366, 571, 627
Hpy188III	TCNNGA	1 cut(s)	413
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	5 cut(s)	34, 410, 500, 524, 587
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	3 cut(s)	195, 258, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 45, 438, 440
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	3 cut(s)	21, 432, 441
Kpn2I	TCCGGA	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	97, 325, 334
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	1 cut(s)	473
LweI	GCATC	1 cut(s)	268
MalI	GATC	3 cut(s)	99, 327, 336
MboI	GATC	3 cut(s)	97, 325, 334
MboII	GAAGA	8 cut(s)	176, 179, 212, 278, 281, 284, 337, 571
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	3 cut(s)	97, 325, 334
MhlI	GDGCHC	2 cut(s)	317, 544
MluCI	AATT	3 cut(s)	147, 158, 339
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	93, 214, 388, 528, 595
MroI	TCCGGA	1 cut(s)	412
MseI	TTAA	1 cut(s)	501
MspI	CCGG	4 cut(s)	95, 413, 525, 598
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	457
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	18, 45, 438, 440
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	3 cut(s)	97, 325, 334
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	3 cut(s)	99, 588, 624
NmeAIII	GCCGAG	1 cut(s)	74
NsbI	TGCGCA	1 cut(s)	442
PctI	GAATGC	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	488
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	586
PspN4I	GGNNCC	3 cut(s)	99, 588, 624
PspPI	GGNCC	1 cut(s)	586
PspPPI	RGGWCCY	1 cut(s)	586
PsuI	RGATCY	3 cut(s)	97, 325, 334
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	3 cut(s)	97, 325, 334
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	2 cut(s)	317, 544
SetI	ASST	6 cut(s)	106, 117, 184, 421, 539, 624
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	586
Sse9I	AATT	3 cut(s)	147, 158, 339
SsiI	CCGC	2 cut(s)	80, 634
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	454
TasI	AATT	3 cut(s)	147, 158, 339
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	1 cut(s)	486
TspDTI	ATGAA	3 cut(s)	213, 362, 530
VpaK11BI	GGWCC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.