Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

21628782 .. 21631264

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGGAGAAATGAGCAAGATACTGATTATTGGGGGCACAGGGTATCTTGACCAGTACATGGTGAAGGCAAGCGTTTCTTTGGGGCATTCAACCTATGCTTATGTCCGACCAATCAAACCCACCAGTACTGATTCTTCAAAGCTTCAGTTGCACAACGAGTTTGAAGCCATCGGACTCACTCTCTTTCAAGGTGAACTGGATGATCATGAAAAACTAGTGGGGGCATTTAAACAAGTTGACATTGTAATTTCGACTCTGGCTGTTCCTCAACATCTTGAACAGCTCAAAATAATCAAGGCTATCAAAGAAGCTGGGAATATAAAGAGATTTATTCCCTCAGAATTTGGAAACGAGGAAGACAGAGCAAGCGGCCTACCACCTTTCGAGGCTATGCTTGTCAATAAAAGGAAGATTAGAAGAGCAACGGAAGCAGCAGGAATTTCATACACTTTTGTGTCTGCAAACAGCTTTGCTTCTTACTTTGTTGATTATCTACGCTTCATCCTCATGAGAACCGAGATGAAGTCATCGTTTATGGCAGTGGTGAAGCCAAGGAAAGATGTAGCCGCTTACACCATAAGAGCAGCAACAGATCCGAGGGCAGCCAACCGGATCTTGATTTGTAGACCGCAAGGAAACATTATATCTCAGTTGGAGTTGATATCAGCATGGGAGGAAAAGACAGGACGCACTCTTAAAAGGATCCATGTCCCAGAACAAGAAATTATAGAGCTCTCTAAAACACTTCCTCACCCAGACAATGGACGTGCATCGATCCTTCACAACATACTCATCAAAGGGGAACAGATGAACTTTGAACTCACAGACAATGACCTTGAGGCTTCCAAGTTATATCTTGATCACAAGTACACTTCCATCGATAGCTTTCTTGACATTTGCTTGGTTGATCCTTCCAAGATCAAATTAGCATCGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

314

Amino Acids

35.09

Weight (kDa)

7.76

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 298	4.7e-52	NmrA-like family
NAD_binding_10	PF13460	13 - 200	4.7e-12	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	61, 764
AccI	GTMKAC	1 cut(s)	628
AciI	CCGC	3 cut(s)	372, 570, 632
AclWI	GGATC	6 cut(s)	590, 623, 700, 713, 772, 905
AcsI	RAATTY	2 cut(s)	344, 441
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	3 cut(s)	59, 130, 872
AfiI	CCNNNNNNNGG	2 cut(s)	61, 764
AgsI	TTSAA	6 cut(s)	93, 141, 167, 191, 281, 821
AhlI	ACTAGT	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	770
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	6 cut(s)	145, 286, 314, 471, 736, 888
AluI	AGCT	6 cut(s)	145, 286, 314, 471, 736, 888
Alw21I	GWGCWC	1 cut(s)	738
AlwI	GGATC	6 cut(s)	590, 623, 700, 713, 772, 905
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	3 cut(s)	434, 587, 605
ApoI	RAATTY	2 cut(s)	344, 441
AsuHPI	GGTGA	4 cut(s)	76, 206, 559, 746
BaeGI	GKGCMC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	738
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	3 cut(s)	446, 599, 617
BccI	CCATC	2 cut(s)	179, 887
BclI	TGATCA	2 cut(s)	205, 862
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	5 cut(s)	373, 435, 570, 588, 606
BlsI	GCNGC	5 cut(s)	374, 436, 571, 589, 607
BmcAI	AGTACT	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	707
BmsI	GCATC	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	860
Bsa29I	ATCGAT	2 cut(s)	776, 882
BsaJI	CCNNGG	2 cut(s)	554, 599
BsaWI	WCCGGW	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 764
Bse1I	ACTGG	3 cut(s)	55, 126, 204
BseCI	ATCGAT	2 cut(s)	776, 882
BseDI	CCNNGG	2 cut(s)	554, 599
BseGI	GGATG	2 cut(s)	208, 504
BseLI	CCNNNNNNNGG	2 cut(s)	61, 764
BseMII	CTCAG	2 cut(s)	354, 665
BseNI	ACTGG	3 cut(s)	55, 126, 204
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	446, 599, 617
BseYI	CCCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	2 cut(s)	776, 882
BsiHKAI	GWGCWC	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	2 cut(s)	61, 764
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	41, 738
Bsp143I	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
BspACI	CCGC	3 cut(s)	372, 570, 632
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	2 cut(s)	353, 664
BspDI	ATCGAT	2 cut(s)	776, 882
BspHI	TCATGA	2 cut(s)	208, 510
BspLI	GGNNCC	1 cut(s)	707
BspPI	GGATC	6 cut(s)	590, 623, 700, 713, 772, 905
BspQI	GCTCTTC	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	55, 126, 204
BssECI	CCNNGG	2 cut(s)	554, 599
BssMI	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
BssT1I	CCWWGG	1 cut(s)	554
Bst6I	CTCTTC	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	73, 370
BstDEI	CTNAG	2 cut(s)	340, 651
BstF5I	GGATG	2 cut(s)	208, 504
BstKTI	GATC	8 cut(s)	208, 598, 618, 708, 780, 865, 913, 924
BstMBI	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 431
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	446, 599, 617
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	3 cut(s)	595, 615, 705
BstYI	RGATCY	3 cut(s)	595, 615, 705
Bsu15I	ATCGAT	2 cut(s)	776, 882
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	2 cut(s)	776, 882
BtgZI	GCGATG	1 cut(s)	918
BtrI	CACGTC	1 cut(s)	770
BtsCI	GGATG	2 cut(s)	208, 504
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	2 cut(s)	73, 370
CciI	TCATGA	2 cut(s)	208, 510
ClaI	ATCGAT	2 cut(s)	776, 882
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	3 cut(s)	58, 129, 871
CviAII	CATG	5 cut(s)	61, 209, 511, 672, 710
CviQI	GTAC	3 cut(s)	58, 129, 871
DdeI	CTNAG	2 cut(s)	340, 651
DpnI	GATC	8 cut(s)	207, 597, 617, 707, 779, 864, 912, 923
DpnII	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
DraI	TTTAAA	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	666
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	736
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	5 cut(s)	64, 212, 514, 675, 713
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	5 cut(s)	60, 208, 510, 671, 709
FbaI	TGATCA	2 cut(s)	205, 862
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	5 cut(s)	373, 435, 570, 588, 606
FokI	GGATG	2 cut(s)	215, 491
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	5 cut(s)	373, 435, 570, 588, 606
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	5 cut(s)	373, 435, 570, 588, 606
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	1 cut(s)	613
HgaI	GACGC	1 cut(s)	699
Hin1II	CATG	5 cut(s)	64, 212, 514, 675, 713
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	134, 177, 256
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	4 cut(s)	76, 206, 559, 746
Hpy166II	GTNNAC	4 cut(s)	197, 241, 629, 873
Hpy188I	TCNGA	4 cut(s)	110, 176, 343, 600
Hpy188III	TCNNGA	7 cut(s)	50, 209, 278, 511, 619, 860, 893
Hpy8I	GTNNAC	4 cut(s)	197, 241, 629, 873
HpyAV	CCTTC	3 cut(s)	61, 791, 924
HpyCH4IV	ACGT	1 cut(s)	769
HpyCH4V	TGCA	3 cut(s)	154, 464, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 431
HpyF3I	CTNAG	2 cut(s)	340, 651
HpySE526I	ACGT	1 cut(s)	769
Hsp92II	CATG	5 cut(s)	64, 212, 514, 675, 713
Ksp22I	TGATCA	2 cut(s)	205, 862
Kzo9I	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
LguI	GCTCTTC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	446, 599, 617
LweI	GCATC	1 cut(s)	782
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	769
MalI	GATC	8 cut(s)	207, 597, 617, 707, 779, 864, 912, 923
MboI	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
MboII	GAAGA	4 cut(s)	129, 371, 424, 432
MflI	RGATCY	3 cut(s)	595, 615, 705
MhlI	GDGCHC	2 cut(s)	41, 738
MluCI	AATT	5 cut(s)	249, 344, 441, 726, 926
MlyI	GAGTC	2 cut(s)	171, 250
MmeI	TCCRAC	2 cut(s)	133, 636
MnlI	CCTC	9 cut(s)	279, 349, 349, 382, 518, 594, 670, 762, 835
MseI	TTAA	2 cut(s)	231, 699
MslI	CAYNNNNRTG	2 cut(s)	455, 509
MspI	CCGG	1 cut(s)	613
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	151, 431
NdeII	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
NlaIII	CATG	5 cut(s)	64, 212, 514, 675, 713
NlaIV	GGNNCC	1 cut(s)	707
OliI	CACNNNNGTG	1 cut(s)	455
PagI	TCATGA	2 cut(s)	208, 510
PciSI	GCTCTTC	1 cut(s)	415
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	2 cut(s)	61, 764
PkrI	GCNGC	5 cut(s)	374, 436, 571, 589, 607
PleI	GAGTC	2 cut(s)	171, 250
PpsI	GAGTC	2 cut(s)	171, 250
Psp124BI	GAGCTC	1 cut(s)	738
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	707
PsuI	RGATCY	3 cut(s)	595, 615, 705
RsaI	GTAC	3 cut(s)	59, 130, 872
RsaNI	GTAC	3 cut(s)	58, 129, 871
RseI	CAYNNNNRTG	2 cut(s)	455, 509
SacI	GAGCTC	1 cut(s)	738
SapI	GCTCTTC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	231, 699
SatI	GCNGC	5 cut(s)	373, 435, 570, 588, 606
Sau3AI	GATC	8 cut(s)	205, 595, 615, 705, 777, 862, 910, 921
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	2 cut(s)	171, 250
SduI	GDGCHC	2 cut(s)	41, 738
SfaNI	GCATC	1 cut(s)	782
SmiMI	CAYNNNNRTG	2 cut(s)	455, 509
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	5 cut(s)	249, 344, 441, 726, 926
SsiI	CCGC	3 cut(s)	372, 570, 632
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	738
StyI	CCWWGG	1 cut(s)	554
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	4 cut(s)	254, 387, 776, 882
TasI	AATT	5 cut(s)	249, 344, 441, 726, 926
TatI	WGTACW	3 cut(s)	57, 128, 870
TauI	GCSGC	2 cut(s)	375, 572
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	231, 699
Tru9I	TTAA	2 cut(s)	231, 699
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	3 cut(s)	434, 587, 605
TspDTI	ATGAA	5 cut(s)	225, 435, 493, 539, 827
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	549
Van91I	CCANNNNNTGG	2 cut(s)	61, 764
XapI	RAATTY	2 cut(s)	344, 441
XmiI	GTMKAC	1 cut(s)	628
XspI	CTAG	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.