Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Reverse (-)

16881097 .. 16883183

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTGAAGGCAAGCGTCTCTTTGGGACATCCAACCTATGCCTATGTGCGACCAATCAAACCCAAAACCGATTCTTCCAAGCTTCTTCTGCACAAAGAATTTGAAGCCATGGGAGCCACCATCTTCCAAGGTGAACTGGACGATCATGAAAAGCTAGTCAAAGCAGTCGAGCAAGTTGACGTTGTAATATCCACGGTGGCTGTCCCTCAACATCTTGAACAGCTGAAACTAATCAAAGCCATTAAAGATGCTGGAAATATAAAGAGATTTATTCCGTCAGAATTTGGAAATGAAGTTGACAGAGTAATTGGGTTGCCGCCTTTCGAGGCTATACTTGATAACAAAAGGAAGATCAGGTCAATTGAAGCAGCAGGAATTCCATATACTTTTGTGTCTGCAAACTCATTTGGTGCATATTTTGTTGATTATTTGCTCCATCCTCGTGAAAAAACAAACCACCAAGTCACTGTTTTTGGCACTGGTGAAGCCAAAGCCGTGTTGAACTATGAGGAAGATGTTGCTACCTACACAATAAAAGCAGCAACAGATCCAAGGGTTGCCAACCGTGTCATCGTTTACAGGCCACAAGGAAACATTGTGTCCCAGTTGGATTTGATTTCTTCTTGGGAGAAGAAGACAGGATGCACTCTTACAAGGAGCTATGTCTCAGAAGAAGAAATACTCAAGCTCTCTGAGACCCTCCCTTCCCCGGACAACATAGCGGTGTCAATTCTGCACAACATATTCATTAAAGGAGATCAAATGAGTTTTGAACTAACAGAAAATGACCTAGAGGCCTCCGAGTTATATCCTGATTACAAGTACACTTCCATTGATAGCTTCCTCGACATTTGCCTGGTGGATCCTCCCAAGCCAAAATTAGCAGCATTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

299

Amino Acids

33.32

Weight (kDa)

5.39

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	317, 722
AclWI	GGATC	3 cut(s)	542, 857, 870
AcsI	RAATTY	3 cut(s)	98, 281, 375
AfaI	GTAC	1 cut(s)	824
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgsI	TTSAA	7 cut(s)	7, 104, 218, 365, 502, 773, 893
AjnI	CCWGG	1 cut(s)	855
AluBI	AGCT	6 cut(s)	82, 154, 223, 660, 688, 840
AluI	AGCT	6 cut(s)	82, 154, 223, 660, 688, 840
Alw26I	GTCTC	3 cut(s)	22, 670, 689
AlwI	GGATC	3 cut(s)	542, 857, 870
AoxI	GGCC	2 cut(s)	581, 795
ApeKI	GCWGC	3 cut(s)	368, 539, 884
ApoI	RAATTY	3 cut(s)	98, 281, 375
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	2 cut(s)	143, 494
BamHI	GGATCC	1 cut(s)	862
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	380, 551
BccI	CCATC	2 cut(s)	128, 444
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	857
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	3 cut(s)	22, 670, 689
BfaI	CTAG	2 cut(s)	155, 791
BisI	GCNGC	4 cut(s)	317, 369, 540, 885
BlsI	GCNGC	4 cut(s)	318, 370, 541, 886
Bme1390I	CCNGG	2 cut(s)	710, 857
BmiI	GGNNCC	2 cut(s)	115, 864
BmrFI	CCNGG	2 cut(s)	710, 857
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	238, 632
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	108, 127, 192, 551, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	3 cut(s)	141, 484, 604
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	5 cut(s)	108, 127, 192, 551, 708
BseGI	GGATG	3 cut(s)	28, 436, 647
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	681, 684
BseNI	ACTGG	3 cut(s)	141, 484, 604
BseXI	GCAGC	2 cut(s)	380, 551
BsgI	GTGCAG	2 cut(s)	74, 719
BshFI	GGCC	2 cut(s)	583, 797
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	3 cut(s)	39, 188, 586
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	3 cut(s)	22, 670, 689
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	3 cut(s)	39, 188, 586
BsnI	GGCC	2 cut(s)	583, 797
Bso31I	GGTCTC	1 cut(s)	689
Bsp143I	GATC	5 cut(s)	142, 351, 547, 757, 862
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	317, 722
BspANI	GGCC	2 cut(s)	583, 797
BspCNI	CTCAG	2 cut(s)	680, 685
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	115, 864
BspPI	GGATC	3 cut(s)	542, 857, 870
BspTNI	GGTCTC	1 cut(s)	689
BsrI	ACTGG	3 cut(s)	141, 484, 604
BssECI	CCNNGG	5 cut(s)	108, 127, 192, 551, 708
BssMI	GATC	5 cut(s)	142, 351, 547, 757, 862
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	3 cut(s)	108, 127, 551
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	3 cut(s)	196, 469, 566
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	667, 693
BstDSI	CCRYGG	2 cut(s)	108, 192
BstF5I	GGATG	3 cut(s)	28, 436, 647
BstKTI	GATC	5 cut(s)	145, 354, 550, 760, 865
BstMAI	GTCTC	3 cut(s)	22, 670, 689
BstMBI	GATC	5 cut(s)	142, 351, 547, 757, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 113
BstNI	CCWGG	1 cut(s)	857
BstSCI	CCNGG	2 cut(s)	708, 855
BstV1I	GCAGC	2 cut(s)	380, 551
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	2 cut(s)	547, 862
BstYI	RGATCY	2 cut(s)	547, 862
BsuRI	GGCC	2 cut(s)	583, 797
BtgI	CCRYGG	2 cut(s)	108, 192
BtsCI	GGATG	3 cut(s)	28, 436, 647
BtsIMutI	CAGTG	2 cut(s)	465, 477
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	1 cut(s)	145
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	823
CviAII	CATG	2 cut(s)	109, 146
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	2 cut(s)	667, 693
DpnI	GATC	5 cut(s)	144, 353, 549, 759, 864
DpnII	GATC	5 cut(s)	142, 351, 547, 757, 862
Eco130I	CCWWGG	3 cut(s)	108, 127, 551
Eco147I	AGGCCT	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	855
EcoT14I	CCWWGG	3 cut(s)	108, 127, 551
ErhI	CCWWGG	3 cut(s)	108, 127, 551
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	112, 149
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	3 cut(s)	39, 188, 586
FatI	CATG	2 cut(s)	108, 145
Fnu4HI	GCNGC	4 cut(s)	317, 369, 540, 885
FokI	GGATG	3 cut(s)	15, 423, 654
Fsp4HI	GCNGC	4 cut(s)	317, 369, 540, 885
FspBI	CTAG	2 cut(s)	155, 791
GluI	GCNGC	4 cut(s)	317, 369, 540, 885
HaeIII	GGCC	2 cut(s)	583, 797
HapII	CCGG	1 cut(s)	710
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	2 cut(s)	112, 149
HincII	GTYRAC	2 cut(s)	178, 298
HindII	GTYRAC	2 cut(s)	178, 298
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	2 cut(s)	143, 494
Hpy166II	GTNNAC	5 cut(s)	134, 178, 298, 577, 825
Hpy188I	TCNGA	4 cut(s)	280, 670, 694, 802
Hpy188III	TCNNGA	4 cut(s)	146, 215, 443, 812
Hpy8I	GTNNAC	5 cut(s)	134, 178, 298, 577, 825
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	3 cut(s)	196, 469, 566
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	91, 398, 413, 645, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 113
HpyF3I	CTNAG	2 cut(s)	667, 693
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	112, 149
Kzo9I	GATC	5 cut(s)	142, 351, 547, 757, 862
LmnI	GCTCC	3 cut(s)	113, 438, 657
Lsp1109I	GCAGC	2 cut(s)	380, 551
LweI	GCATC	2 cut(s)	238, 632
MaeI	CTAG	2 cut(s)	155, 791
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	5 cut(s)	144, 353, 549, 759, 864
MboI	GATC	5 cut(s)	142, 351, 547, 757, 862
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	547, 862
MluCI	AATT	7 cut(s)	98, 281, 306, 360, 375, 729, 878
MmeI	TCCRAC	2 cut(s)	56, 588
MnlI	CCTC	9 cut(s)	216, 319, 450, 502, 710, 787, 808, 854, 876
MseI	TTAA	2 cut(s)	243, 750
MslI	CAYNNNNRTG	3 cut(s)	441, 722, 892
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	2 cut(s)	710, 857
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	2 cut(s)	88, 113
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	5 cut(s)	142, 351, 547, 757, 862
NlaIII	CATG	2 cut(s)	112, 149
NlaIV	GGNNCC	2 cut(s)	115, 864
NmuCI	GTSAC	1 cut(s)	463
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	797
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	318, 370, 541, 886
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	2 cut(s)	115, 864
PsuI	RGATCY	2 cut(s)	547, 862
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	3 cut(s)	441, 722, 892
SaqAI	TTAA	2 cut(s)	243, 750
SatI	GCNGC	4 cut(s)	317, 369, 540, 885
Sau3AI	GATC	5 cut(s)	142, 351, 547, 757, 862
ScrFI	CCNGG	2 cut(s)	710, 857
SfaNI	GCATC	2 cut(s)	238, 632
SmiMI	CAYNNNNRTG	3 cut(s)	441, 722, 892
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	98, 281, 306, 360, 375, 729, 878
SseBI	AGGCCT	1 cut(s)	797
SsiI	CCGC	2 cut(s)	317, 722
SspMI	CTAG	2 cut(s)	155, 791
StuI	AGGCCT	1 cut(s)	797
StyD4I	CCNGG	2 cut(s)	708, 855
StyI	CCWWGG	3 cut(s)	108, 127, 551
TaaI	ACNGT	3 cut(s)	196, 469, 566
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	168, 324, 846
TasI	AATT	7 cut(s)	98, 281, 306, 360, 375, 729, 878
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	243, 750
Tru9I	TTAA	2 cut(s)	243, 750
TscAI	CASTG	2 cut(s)	472, 484
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	3 cut(s)	368, 539, 884
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	162, 306, 736
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	472, 484
XapI	RAATTY	3 cut(s)	98, 281, 375
XspI	CTAG	2 cut(s)	155, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.