Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

19555044 .. 19563395

Gene Structure 8352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTTGTGAGAAGAGCAAGATACTGATATTTGGAGCAAAAGGGTATCTAGGCAAGTACATGGTGAAAGCAAGCGTTTCTTTGGGCCATCCAACCTATGTCTACGCCCGACCAATCAAACCCAACACTGACCCTTCCAAGCTTGAGCTGCACAAAGAATATGAAGCCATGGGACTCACCATCTTCCAAGGTGAACTCAATGAGCACGAAAAGCTAGTCGCAGCGCTTCGACAAGTTGATGTTGTAGTATCTACGCTGCCAGCGCCTCAGCATCTTCAACAGTTAAAAATTATCAACGCCATCAAAGATGCCGGTAATATAAAGAGATTTATTCCGTCAGAGTTTGGAGATGATCCAGAAAGAGCAAGCGCATTGCCGCCTTTCGAGGCTCTACATGAGAATAAAAGGGTGATTAGAAGGGCGACGGAAGCAGCAAGAATTCCGTACACTTCTGTGTGTGCAAACTCATGTGCTGCATATTTTGTTGATTATCTGCTTCATCCTCGTGAACAACGTGAGGAAGTCATTGTTCATGGCACTGGTGAAACCAAGGTTGTGCTGAATTATGAGGAAGATATAGCCACATACACAATAAAAGCAGCAACAGATCCCAGGGCAGCCAATCATGTCCTTACTTGTAGACCACAAGGAAACATTATATCTCAGCTGGATTTGATTTCTTGTTGGGAGAAGAAGACCGGACGGACTCTTAGAAGGATTCATATGCCAGAACAAGAAATCCTCAAGCTCTCTGAGACCCTTCCTCACCCAGACAATGTACGTGCGGCAGTCATTTACAGCATATTCATCAAAGGTCAGACGAGGATTGAACTCACGGTAAATGACCTAGAGGCCTCAAAATTATATCCTGATTACAAGTACACTCCCATTGATAAGTTCCTTGATATTTGCTTGGTTGATCCTCCCAATCCAAAATTAGCAGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

317

Amino Acids

35.59

Weight (kDa)

7.64

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	102, 640
AciI	CCGC	2 cut(s)	377, 785
AclWI	GGATC	3 cut(s)	347, 602, 914
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	4 cut(s)	59, 446, 780, 881
AfeI	AGCGCT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	278, 830
AjnI	CCWGG	1 cut(s)	611
AleI	CACNNNNGTG	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	723, 755
AluBI	AGCT	5 cut(s)	142, 148, 214, 667, 748
AluI	AGCT	5 cut(s)	142, 148, 214, 667, 748
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	3 cut(s)	347, 602, 914
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	85, 852
ApeKI	GCWGC	8 cut(s)	148, 221, 256, 431, 473, 599, 617, 941
ApoI	RAATTY	1 cut(s)	438
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	3 cut(s)	226, 265, 371
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	6 cut(s)	76, 169, 203, 421, 554, 758
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	7 cut(s)	135, 233, 243, 443, 460, 611, 629
BccI	CCATC	3 cut(s)	96, 188, 308
BciT130I	CCWGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	3 cut(s)	50, 215, 848
BfoI	RGCGCY	2 cut(s)	227, 266
Bme1390I	CCNGG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	280, 298
BpiI	GAAGAC	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	164, 728
BsaAI	YACGTR	1 cut(s)	782
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	5 cut(s)	168, 187, 549, 611, 612
BsaWI	WCCGGW	1 cut(s)	698
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	5 cut(s)	168, 187, 549, 611, 612
BseGI	GGATG	2 cut(s)	88, 499
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	3 cut(s)	281, 677, 744
BseNI	ACTGG	1 cut(s)	544
BseXI	GCAGC	7 cut(s)	135, 233, 243, 443, 460, 611, 629
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	87, 854
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	312, 699
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	944
BsnI	GGCC	2 cut(s)	87, 854
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	352, 607, 919
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	377, 785
BspANI	GGCC	2 cut(s)	87, 854
BspCNI	CTCAG	3 cut(s)	280, 676, 745
BspPI	GGATC	3 cut(s)	347, 602, 914
BspQI	GCTCTTC	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	5 cut(s)	168, 187, 549, 611, 612
BssMI	GATC	3 cut(s)	352, 607, 919
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	3 cut(s)	168, 187, 549
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	282, 838
Bst6I	CTCTTC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	73, 261, 367
BstDEI	CTNAG	4 cut(s)	267, 663, 710, 753
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	88, 499
BstH2I	RGCGCY	2 cut(s)	227, 266
BstHHI	GCGC	3 cut(s)	226, 265, 371
BstKTI	GATC	3 cut(s)	355, 610, 922
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	3 cut(s)	352, 607, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 211, 262, 428
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	611
BstV1I	GCAGC	7 cut(s)	135, 233, 243, 443, 460, 611, 629
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	87, 854
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	88, 499
BtsIMutI	CAGTG	2 cut(s)	126, 537
Cac8I	GCNNGC	3 cut(s)	73, 261, 367
CfoI	GCGC	3 cut(s)	226, 265, 371
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	4 cut(s)	58, 445, 779, 880
CviAII	CATG	6 cut(s)	61, 169, 395, 468, 533, 626
CviQI	GTAC	4 cut(s)	58, 445, 779, 880
DdeI	CTNAG	4 cut(s)	267, 663, 710, 753
DpnI	GATC	3 cut(s)	354, 609, 921
DpnII	GATC	3 cut(s)	352, 607, 919
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	168, 187, 549
Eco147I	AGGCCT	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	749
Eco47III	AGCGCT	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	3 cut(s)	168, 187, 549
ErhI	CCWWGG	3 cut(s)	168, 187, 549
FaeI	CATG	6 cut(s)	64, 172, 398, 471, 536, 629
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	6 cut(s)	60, 168, 394, 467, 532, 625
FauNDI	CATATG	1 cut(s)	723
FblI	GTMKAC	2 cut(s)	102, 640
FokI	GGATG	2 cut(s)	75, 486
FspBI	CTAG	3 cut(s)	50, 215, 848
GlaI	GCGC	3 cut(s)	225, 264, 370
HaeII	RGCGCY	2 cut(s)	227, 266
HaeIII	GGCC	2 cut(s)	87, 854
HapII	CCGG	2 cut(s)	312, 699
HhaI	GCGC	3 cut(s)	226, 265, 371
Hin1II	CATG	6 cut(s)	64, 172, 398, 471, 536, 629
Hin6I	GCGC	3 cut(s)	224, 263, 369
HinP1I	GCGC	3 cut(s)	224, 263, 369
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	174, 706, 718
HpaII	CCGG	2 cut(s)	312, 699
HphI	GGTGA	6 cut(s)	76, 169, 203, 421, 554, 758
Hpy166II	GTNNAC	6 cut(s)	103, 194, 447, 509, 641, 882
Hpy188I	TCNGA	3 cut(s)	340, 754, 819
Hpy188III	TCNNGA	3 cut(s)	356, 506, 869
Hpy8I	GTNNAC	6 cut(s)	103, 194, 447, 509, 641, 882
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	4 cut(s)	144, 411, 708, 770
HpyCH4III	ACNGT	2 cut(s)	282, 838
HpyCH4IV	ACGT	2 cut(s)	514, 781
HpyCH4V	TGCA	3 cut(s)	151, 461, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 211, 262, 428
HpyF3I	CTNAG	4 cut(s)	267, 663, 710, 753
HpySE526I	ACGT	2 cut(s)	514, 781
Hsp92II	CATG	6 cut(s)	64, 172, 398, 471, 536, 629
HspAI	GCGC	3 cut(s)	224, 263, 369
Kzo9I	GATC	3 cut(s)	352, 607, 919
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	7 cut(s)	135, 233, 243, 443, 460, 611, 629
LweI	GCATC	2 cut(s)	280, 298
MaeI	CTAG	3 cut(s)	50, 215, 848
MaeII	ACGT	2 cut(s)	514, 781
MalI	GATC	3 cut(s)	354, 609, 921
MboI	GATC	3 cut(s)	352, 607, 919
MboII	GAAGA	6 cut(s)	25, 175, 266, 584, 703, 706
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	288, 438, 562, 860, 935
MlyI	GAGTC	2 cut(s)	168, 700
MmeI	TCCRAC	1 cut(s)	116
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	452, 504
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	2 cut(s)	312, 699
MspR9I	CCNGG	1 cut(s)	613
Mva1269I	GAATGC	1 cut(s)	944
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	4 cut(s)	148, 211, 262, 428
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	3 cut(s)	352, 607, 919
NlaIII	CATG	6 cut(s)	64, 172, 398, 471, 536, 629
OliI	CACNNNNGTG	1 cut(s)	452
PasI	CCCWGGG	1 cut(s)	612
PceI	AGGCCT	1 cut(s)	854
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PctI	GAATGC	1 cut(s)	944
PfeI	GAWTC	1 cut(s)	718
PleI	GAGTC	2 cut(s)	168, 700
PpsI	GAGTC	2 cut(s)	168, 700
Ppu21I	YACGTR	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	611
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	4 cut(s)	59, 446, 780, 881
RsaNI	GTAC	4 cut(s)	58, 445, 779, 880
RseI	CAYNNNNRTG	2 cut(s)	452, 504
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	284
Sau3AI	GATC	3 cut(s)	352, 607, 919
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	168, 700
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	280, 298
SmiMI	CAYNNNNRTG	2 cut(s)	452, 504
SmlI	CTYRAG	2 cut(s)	143, 743
SmoI	CTYRAG	2 cut(s)	143, 743
Sse9I	AATT	5 cut(s)	288, 438, 562, 860, 935
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	2 cut(s)	377, 785
SspMI	CTAG	3 cut(s)	50, 215, 848
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	1 cut(s)	611
StyI	CCWWGG	3 cut(s)	168, 187, 549
TaaI	ACNGT	2 cut(s)	282, 838
TaiI	ACGT	2 cut(s)	517, 784
TaqI	TCGA	2 cut(s)	229, 384
TasI	AATT	5 cut(s)	288, 438, 562, 860, 935
TatI	WGTACW	2 cut(s)	57, 879
TauI	GCSGC	2 cut(s)	379, 788
TfiI	GAWTC	1 cut(s)	718
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	2 cut(s)	133, 544
TseI	GCWGC	8 cut(s)	148, 221, 256, 431, 473, 599, 617, 941
TspDTI	ATGAA	5 cut(s)	177, 488, 521, 710, 796
TspGWI	ACGGA	4 cut(s)	324, 432, 440, 718
TspRI	CASTG	2 cut(s)	133, 544
XapI	RAATTY	1 cut(s)	438
XmiI	GTMKAC	2 cut(s)	102, 640
XspI	CTAG	3 cut(s)	50, 215, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.