Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

13962395 .. 13965211

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTTCAAACGCTCAAAATATCATGTATTTTAGAGCACTGTAGAATTTTTGTTCCATCTTCATCATGCACTCATTTTCCCTATATAAAACACAATAGCCCATGCAAATATCAGCTGGGAAGAACTATATTAACGAAGAAGGTCATGGCTTGTGAGAACAACAAGATACTGATATTTGGAGCCACTGGGTACCTAGGCAAGTACATGGTGAAAGCAAGCGTTTCATTGGGCCATCCAACCTATGCTTACGCCCGATCAATCAAGCCCAACACTGACCCTTCCAAGCTTGAGCTGCACAAAGAATATGAAGCCATGGGAGTCACCATCTTCCAAGGTGAACTCGATGAGCACGAAAAGCTAGTCGCAGTGCTTCAACAAGTTGACATTGTAATATCTACATTGCCTATTCCTCTGCTTCTTCAACAGTTCAAAATTATCAACGCCATCAAACATGCTGGCAATATAAAGAGATTTATTCCGGCAGAGTTTGGAGAAGATCCAGAAGGAGCAACCGCGCTGCCGCCTTTCGAGGCTATACATGAGAATAGAAGGGTGATTAGAAGGGCGACTGAAGCAGCAGGAATTCCGTACACTTATGTGCGTGGAAACACATTTGCTGCATATTTTGTTGATTATTTGCTTCATCCTCGGGAAGAACGTGAGGAAGTCATTGTTTATGGCACTGGTGAAACCAAGGCTGTGTTGAATTACGAGGAAGATATTTCCACCTACACAATAAAAGCAGCATCAGATCCAAGGGCAGCCAATCATATCCTCACTTGTAAACCGCAACGAAACATTATATCTCAGTTGGATTTGATTTCTTGTTGGGAAAATAAGAAAGGACGGATGCTTAAAAGGATTCATATCCCAGAACAAGAAATCCTCAATCACTCTGAGACTCTTCCTCCCCCAGACAATATACGTGCGGCAATCATTTACAGCATATTCATCAAAGGTCAAATAAGGATTGAACTCACAGCAAACAATCTAGAGGCCTCAGAACTATATCCTGATTACAACTACACTTCCATCGATAACTTCCTTGATATTTGCTTGGTTGATCGTCCCAAGCCAAAATTAGCAACATTGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

366

Amino Acids

41.36

Weight (kDa)

7.62

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	1 cut(s)	515
AciI	CCGC	4 cut(s)	513, 521, 788, 929
AclWI	GGATC	2 cut(s)	491, 746
AcsI	RAATTY	2 cut(s)	45, 582
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	191, 203, 590
AgsI	TTSAA	6 cut(s)	8, 374, 422, 430, 706, 974
AleI	CACNNNNGTG	1 cut(s)	596
AloI	GAACNNNNNNTCC	2 cut(s)	867, 899
AluBI	AGCT	4 cut(s)	115, 286, 292, 358
AluI	AGCT	4 cut(s)	115, 286, 292, 358
Alw21I	GWGCWC	2 cut(s)	39, 351
Alw26I	GTCTC	1 cut(s)	893
AlwI	GGATC	2 cut(s)	491, 746
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	2 cut(s)	229, 996
ApeKI	GCWGC	6 cut(s)	292, 517, 575, 617, 743, 761
ApoI	RAATTY	2 cut(s)	45, 582
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp718I	GGTACC	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	5 cut(s)	220, 313, 347, 565, 698
AvaI	CYCGRG	1 cut(s)	648
AvrII	CCTAGG	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	39, 351
BbvI	GCAGC	6 cut(s)	279, 504, 587, 604, 755, 773
BccI	CCATC	5 cut(s)	64, 240, 332, 452, 1040
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	4 cut(s)	194, 359, 992, 1096
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	8 cut(s)	293, 518, 521, 576, 618, 744, 762, 930
BlnI	CCTAGG	1 cut(s)	193
BlsI	GCNGC	8 cut(s)	294, 519, 522, 577, 619, 745, 763, 931
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	181, 191
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	755, 840
BmuI	ACTGGG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	1035
BsaAI	YACGTR	1 cut(s)	926
BsaBI	GATNNNNATC	1 cut(s)	866
BsaJI	CCNNGG	6 cut(s)	193, 312, 331, 647, 693, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bse1I	ACTGG	2 cut(s)	190, 688
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	866
BseCI	ATCGAT	1 cut(s)	1035
BseDI	CCNNGG	6 cut(s)	193, 312, 331, 647, 693, 755
BseGI	GGATG	3 cut(s)	232, 643, 855
BseJI	GATNNNNATC	1 cut(s)	866
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	821, 888, 1014
BseNI	ACTGG	2 cut(s)	190, 688
BseXI	GCAGC	6 cut(s)	279, 504, 587, 604, 755, 773
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	231, 998
BshNI	GGYRCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	1035
BsiHKAI	GWGCWC	2 cut(s)	39, 351
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	1053
BsmAI	GTCTC	1 cut(s)	893
BsmFI	GGGAC	1 cut(s)	1053
BsnI	GGCC	2 cut(s)	231, 998
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	39, 351
Bsp143I	GATC	4 cut(s)	254, 496, 751, 1063
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	4 cut(s)	513, 521, 788, 929
BspANI	GGCC	2 cut(s)	231, 998
BspCNI	CTCAG	3 cut(s)	820, 889, 1013
BspDI	ATCGAT	1 cut(s)	1035
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	181, 191
BspPI	GGATC	2 cut(s)	491, 746
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	190, 688
BssECI	CCNNGG	6 cut(s)	193, 312, 331, 647, 693, 755
BssMI	GATC	4 cut(s)	254, 496, 751, 1063
BssT1I	CCWWGG	5 cut(s)	193, 312, 331, 693, 755
Bst4CI	ACNGT	2 cut(s)	41, 426
Bst6I	CTCTTC	1 cut(s)	909
BstBAI	YACGTR	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	217, 457
BstDEI	CTNAG	3 cut(s)	807, 897, 1000
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	232, 643, 855
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	4 cut(s)	257, 499, 754, 1066
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	4 cut(s)	254, 496, 751, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 355, 572
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	6 cut(s)	279, 504, 587, 604, 755, 773
BstX2I	RGATCY	2 cut(s)	496, 751
BstYI	RGATCY	2 cut(s)	496, 751
Bsu15I	ATCGAT	1 cut(s)	1035
BsuRI	GGCC	2 cut(s)	231, 998
BsuTUI	ATCGAT	1 cut(s)	1035
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	232, 643, 855
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	5 cut(s)	37, 183, 270, 372, 681
Cac8I	GCNNGC	2 cut(s)	217, 457
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	1035
Csp6I	GTAC	3 cut(s)	190, 202, 589
CviAII	CATG	8 cut(s)	24, 66, 102, 145, 205, 313, 452, 539
CviQI	GTAC	3 cut(s)	190, 202, 589
DdeI	CTNAG	3 cut(s)	807, 897, 1000
DpnI	GATC	4 cut(s)	256, 498, 753, 1065
DpnII	GATC	4 cut(s)	254, 496, 751, 1063
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Eco130I	CCWWGG	5 cut(s)	193, 312, 331, 693, 755
Eco147I	AGGCCT	1 cut(s)	998
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	582
EcoT14I	CCWWGG	5 cut(s)	193, 312, 331, 693, 755
ErhI	CCWWGG	5 cut(s)	193, 312, 331, 693, 755
FaeI	CATG	8 cut(s)	27, 69, 105, 148, 208, 316, 455, 542
FaqI	GGGAC	1 cut(s)	1053
FatI	CATG	8 cut(s)	23, 65, 101, 144, 204, 312, 451, 538
Fnu4HI	GCNGC	8 cut(s)	293, 518, 521, 576, 618, 744, 762, 930
FokI	GGATG	3 cut(s)	219, 630, 862
Fsp4HI	GCNGC	8 cut(s)	293, 518, 521, 576, 618, 744, 762, 930
FspBI	CTAG	4 cut(s)	194, 359, 992, 1096
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	8 cut(s)	293, 518, 521, 576, 618, 744, 762, 930
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	231, 998
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	8 cut(s)	27, 69, 105, 148, 208, 316, 455, 542
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	3 cut(s)	318, 862, 901
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	5 cut(s)	220, 313, 347, 565, 698
Hpy166II	GTNNAC	4 cut(s)	338, 382, 591, 785
Hpy188I	TCNGA	3 cut(s)	751, 898, 1003
Hpy188III	TCNNGA	4 cut(s)	500, 650, 992, 1013
Hpy8I	GTNNAC	4 cut(s)	338, 382, 591, 785
HpyAV	CCTTC	5 cut(s)	133, 288, 497, 543, 555
HpyCH4III	ACNGT	2 cut(s)	41, 426
HpyCH4IV	ACGT	2 cut(s)	658, 925
HpyCH4V	TGCA	4 cut(s)	69, 105, 295, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 355, 572
HpyF3I	CTNAG	3 cut(s)	807, 897, 1000
HpySE526I	ACGT	2 cut(s)	658, 925
Hsp92II	CATG	8 cut(s)	27, 69, 105, 148, 208, 316, 455, 542
HspAI	GCGC	1 cut(s)	515
KpnI	GGTACC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	254, 496, 751, 1063
LmnI	GCTCC	2 cut(s)	179, 506
Lsp1109I	GCAGC	6 cut(s)	279, 504, 587, 604, 755, 773
LweI	GCATC	2 cut(s)	755, 840
MaeI	CTAG	4 cut(s)	194, 359, 992, 1096
MaeII	ACGT	2 cut(s)	658, 925
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	4 cut(s)	256, 498, 753, 1065
MboI	GATC	4 cut(s)	254, 496, 751, 1063
MboII	GAAGA	9 cut(s)	51, 132, 148, 319, 410, 506, 665, 728, 896
MflI	RGATCY	2 cut(s)	496, 751
MhlI	GDGCHC	2 cut(s)	39, 351
MluCI	AATT	5 cut(s)	45, 432, 582, 706, 1079
MlyI	GAGTC	2 cut(s)	327, 895
MmeI	TCCRAC	2 cut(s)	260, 792
MseI	TTAA	2 cut(s)	131, 855
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	292, 355, 572
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	254, 496, 751, 1063
NlaIII	CATG	8 cut(s)	27, 69, 105, 148, 208, 316, 455, 542
NlaIV	GGNNCC	2 cut(s)	181, 191
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	455
OliI	CACNNNNGTG	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	998
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 655
PfeI	GAWTC	1 cut(s)	862
PkrI	GCNGC	8 cut(s)	294, 519, 522, 577, 619, 745, 763, 931
PleI	GAGTC	2 cut(s)	326, 895
PpsI	GAGTC	2 cut(s)	326, 895
Ppu21I	YACGTR	1 cut(s)	926
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	181, 191
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	496, 751
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	191, 203, 590
RsaNI	GTAC	3 cut(s)	190, 202, 589
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	131, 855
SatI	GCNGC	8 cut(s)	293, 518, 521, 576, 618, 744, 762, 930
Sau3AI	GATC	4 cut(s)	254, 496, 751, 1063
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	327, 895
SduI	GDGCHC	2 cut(s)	39, 351
SfaNI	GCATC	2 cut(s)	755, 840
SfcI	CTRYAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	45, 432, 582, 706, 1079
SseBI	AGGCCT	1 cut(s)	998
SsiI	CCGC	4 cut(s)	513, 521, 788, 929
SspMI	CTAG	4 cut(s)	194, 359, 992, 1096
StuI	AGGCCT	1 cut(s)	998
StyI	CCWWGG	5 cut(s)	193, 312, 331, 693, 755
TaaI	ACNGT	2 cut(s)	41, 426
TaiI	ACGT	2 cut(s)	661, 928
TaqI	TCGA	3 cut(s)	342, 528, 1035
TasI	AATT	5 cut(s)	45, 432, 582, 706, 1079
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	523, 932
TfiI	GAWTC	1 cut(s)	862
Tru1I	TTAA	2 cut(s)	131, 855
Tru9I	TTAA	2 cut(s)	131, 855
TscAI	CASTG	5 cut(s)	44, 190, 277, 372, 688
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	6 cut(s)	292, 517, 575, 617, 743, 761
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	6 cut(s)	51, 213, 321, 632, 854, 940
TspGWI	ACGGA	2 cut(s)	576, 862
TspRI	CASTG	5 cut(s)	44, 190, 277, 372, 688
XapI	RAATTY	2 cut(s)	45, 582
XbaI	TCTAGA	1 cut(s)	991
XceI	RCATGY	1 cut(s)	455
XmaJI	CCTAGG	1 cut(s)	193
XspI	CTAG	4 cut(s)	194, 359, 992, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.