Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Reverse (-)

16869387 .. 16870667

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAATCGAAACTTGCCGTGTTGAACTATGAGGAAGATGTTGCTACCTACACAATAAAAGCAGCAACAGATCCAAGGGTTGCCAACCGTGTCATCGTTTACAGGCCACAAGGAAACATTGTGTCCCAGTTGGATTTGATTTCTTCTTGGGAGAAGAAGACAGGATGCACTCTTACAAGGAGCTATGTCTCAGAAGAAGAAATACTCAAGCTCTCTGAGACCCTCCCTTCCCCGGACAACATAGCGGTGTCAATTCTGCACAACATATTCATTAAAGGAGATCAAATGAGTTTTGAACTAACAGAAAATGACCTAGAGGCCTCCGAGTTATATCCTGATTACAAGTACACTTCCATTGATAGCTTCCTCGACATTTGCCTGGTGGATCCTCCCAAGCCAAAATTAGCAGCATTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

140

Amino Acids

15.68

Weight (kDa)

4.53

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	3 cut(s)	65, 380, 393
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	25, 296, 416
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	3 cut(s)	183, 211, 363
AluI	AGCT	3 cut(s)	183, 211, 363
Alw26I	GTCTC	2 cut(s)	193, 212
AlwI	GGATC	3 cut(s)	65, 380, 393
AoxI	GGCC	2 cut(s)	104, 318
ApeKI	GCWGC	2 cut(s)	62, 407
AsuC2I	CCSGG	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	186, 218
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	193, 212
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	63, 408
BlsI	GCNGC	2 cut(s)	64, 409
Bme1390I	CCNGG	2 cut(s)	233, 380
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	233, 380
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	74, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	74, 231
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	204, 207
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	106, 320
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	193, 212
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	106, 320
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	70, 280, 385
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	106, 320
BspCNI	CTCAG	2 cut(s)	203, 208
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	3 cut(s)	65, 380, 393
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	74, 231
BssMI	GATC	3 cut(s)	70, 280, 385
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	190, 216
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	73, 283, 388
BstMAI	GTCTC	2 cut(s)	193, 212
BstMBI	GATC	3 cut(s)	70, 280, 385
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	231, 378
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	70, 385
BstYI	RGATCY	2 cut(s)	70, 385
BsuRI	GGCC	2 cut(s)	106, 320
BtsCI	GGATG	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	346
CviJI	RGCY	6 cut(s)	106, 183, 211, 320, 363, 397
CviKI_1	RGCY	6 cut(s)	106, 183, 211, 320, 363, 397
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	190, 216
DpnI	GATC	3 cut(s)	72, 282, 387
DpnII	GATC	3 cut(s)	70, 280, 385
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaiI	YATR	5 cut(s)	30, 186, 242, 266, 331
FaqI	GGGAC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	63, 408
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	63, 408
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	2 cut(s)	63, 408
HaeIII	GGCC	2 cut(s)	106, 320
HapII	CCGG	1 cut(s)	233
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	100, 348
Hpy188I	TCNGA	3 cut(s)	193, 217, 325
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	100, 348
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	168, 259
HpyF3I	CTNAG	2 cut(s)	190, 216
Kzo9I	GATC	3 cut(s)	70, 280, 385
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	7 cut(s)	88, 140, 147, 246, 348, 365, 392
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	314
MalI	GATC	3 cut(s)	72, 282, 387
MboI	GATC	3 cut(s)	70, 280, 385
MboII	GAAGA	6 cut(s)	47, 135, 166, 169, 206, 209
MflI	RGATCY	2 cut(s)	70, 385
MluCI	AATT	2 cut(s)	252, 401
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	25, 233, 310, 331, 377, 399
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	2 cut(s)	245, 415
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	233, 380
MvaI	CCWGG	1 cut(s)	380
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	70, 280, 385
NlaIV	GGNNCC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	64, 409
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	387
PsuI	RGATCY	2 cut(s)	70, 385
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	245, 415
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	63, 408
Sau3AI	GATC	3 cut(s)	70, 280, 385
ScrFI	CCNGG	2 cut(s)	233, 380
SetI	ASST	5 cut(s)	50, 185, 213, 315, 365
SfaNI	GCATC	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	245, 415
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	252, 401
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	231, 378
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	8, 369
TasI	AATT	2 cut(s)	252, 401
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	2 cut(s)	62, 407
TspDTI	ATGAA	1 cut(s)	259
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.