Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

23681305 .. 23684502

Gene Structure 3198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1173300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTCAAAATATCATGTAGTTTAGAGCACTGTGGAATTTTTGTTCCATCTTCATCATGCACTCATTTTCCCTATATAAAACACAATAGCCCTTACAAGTATCAGCTGGGAAGAACAATATTAATGAAGAAGGTTATGGCTTGTGAGAACAAGAAGATACTGATATTTGGAGCCACAGGGTACCTAGGCAAGTACATGGTGAAAGCAAGCGTTTCATTGGGCCATCCAACCTATGCTTACGCCCGATCAATCAAACCCAACACTCACCCTTCCAAGCTTGAGCTGCATAAAGAATATGAAGCCATGGGAGTCACCATCTTCCAAGGTGAACTCGATGAGCACGAAAAGCTAGTCGCAGTGCTTCGACAAGTTGACATTGTAATATCTACATTGCCTATTCCTCAGCTTCTTCAACAGTTCAAAATTATCAACGCCATCAAAGATGCTGGAAATATAAAGAGATTTATTCCGGCAGAGTTTGGAGATGATCCAGAAAGAGCAAGCGCGCTGCCGCCTTTCGAGGCTATACATGAGAATAGAAGGGTGATTAGAAGGGCGACTGAAGCAGCAGGAATTCCGTGCACTTATGTGTGTGCAAACTCATTTGCTGCATATTTTGTTGATTATTTGCTTCATCCTCGTGAAGAACTTGAGGAAGTCATTGTTTATGGCACTGGTGAAGCCAAGGCTGTGTTGAATTACGAGGAAGATATAGCCACCTACACAATAAAAGCAGCAACAGATCCAAGGGCAGCCAACCACGTTCTCACTTGTAAACCGCAACGAAACATTATATCTCAGCTGGATTTGATTTCTTGTTGGGAAAAGAAGAAAGGACGGATGCTCAGAAGGATTCATATCCCAGAACAAGAAATCCTCAATCACTCTAAGACTCTTCCTCCCCCAGACAATATACGTGCAGCAATCATTCACAGCTTATTCATCAAAGGTCAAATGAGGATTGAACACACAGCAAACGACCTAGAGGCCTCAGAATTATATCCCGATTACAACTACACTTCCATTGATAACTTCCTTGATATTTGCTTGGTTGATCCTCCCAAGCCAAAATTAGCAACATTGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

363

Amino Acids

40.92

Weight (kDa)

8.0

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	50 - 346	9.5e-56	NmrA-like family
NAD_binding_10	PF13460	57 - 159	1.2e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AccII	CGCG	1 cut(s)	506
AciI	CCGC	2 cut(s)	512, 779
AclWI	GGATC	3 cut(s)	482, 737, 1049
AcsI	RAATTY	2 cut(s)	36, 573
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	2 cut(s)	182, 194
AgsI	TTSAA	4 cut(s)	413, 421, 697, 965
AleI	CACNNNNGTG	1 cut(s)	587
AloI	GAACNNNNNNTCC	4 cut(s)	27, 59, 858, 890
AluBI	AGCT	7 cut(s)	106, 277, 283, 349, 406, 802, 936
AluI	AGCT	7 cut(s)	106, 277, 283, 349, 406, 802, 936
Alw21I	GWGCWC	3 cut(s)	30, 342, 584
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	482, 737, 1049
AoxI	GGCC	2 cut(s)	220, 987
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	7 cut(s)	283, 508, 566, 608, 734, 752, 920
ApoI	RAATTY	2 cut(s)	36, 573
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AseI	ATTAAT	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	506, 508
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	6 cut(s)	211, 257, 304, 338, 556, 689
AvrII	CCTAGG	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	639
Bbv12I	GWGCWC	3 cut(s)	30, 342, 584
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	7 cut(s)	270, 495, 578, 595, 746, 764, 932
BccI	CCATC	4 cut(s)	55, 231, 323, 443
BfaI	CTAG	4 cut(s)	185, 350, 983, 1087
BisI	GCNGC	8 cut(s)	284, 509, 512, 567, 609, 735, 753, 921
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	8 cut(s)	285, 510, 513, 568, 610, 736, 754, 922
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	172, 182
BmsI	GCATC	2 cut(s)	433, 831
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	299, 671
BsaAI	YACGTR	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	857
BsaJI	CCNNGG	5 cut(s)	184, 303, 322, 684, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	883, 913
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	857
BseDI	CCNNGG	5 cut(s)	184, 303, 322, 684, 746
BseGI	GGATG	3 cut(s)	223, 634, 846
BseJI	GATNNNNATC	1 cut(s)	857
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	4 cut(s)	416, 812, 859, 1005
BseNI	ACTGG	1 cut(s)	679
BsePI	GCGCGC	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	7 cut(s)	270, 495, 578, 595, 746, 764, 932
BseYI	CCCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	222, 989
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	30, 342, 584
BsiSI	CCGG	1 cut(s)	470
BsnI	GGCC	2 cut(s)	222, 989
Bsp1286I	GDGCHC	3 cut(s)	30, 342, 584
Bsp143I	GATC	4 cut(s)	245, 487, 742, 1054
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	512, 779
BspANI	GGCC	2 cut(s)	222, 989
BspCNI	CTCAG	4 cut(s)	415, 811, 858, 1004
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	2 cut(s)	172, 182
BspPI	GGATC	3 cut(s)	482, 737, 1049
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	5 cut(s)	184, 303, 322, 684, 746
BssHII	GCGCGC	1 cut(s)	504
BssMI	GATC	4 cut(s)	245, 487, 742, 1054
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	5 cut(s)	184, 303, 322, 684, 746
Bst2BI	CACGAG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	32, 417
Bst6I	CTCTTC	1 cut(s)	900
BstBAI	YACGTR	1 cut(s)	917
BstC8I	GCNNGC	3 cut(s)	208, 502, 506
BstDEI	CTNAG	5 cut(s)	402, 798, 845, 888, 991
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	223, 634, 846
BstFNI	CGCG	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	506, 508
BstKTI	GATC	4 cut(s)	248, 490, 745, 1057
BstMBI	GATC	4 cut(s)	245, 487, 742, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 346, 563
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	7 cut(s)	270, 495, 578, 595, 746, 764, 932
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	222, 989
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	223, 634, 846
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	28, 363, 672
Cac8I	GCNNGC	3 cut(s)	208, 502, 506
CfoI	GCGC	2 cut(s)	506, 508
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	181, 193
CviAII	CATG	5 cut(s)	15, 57, 196, 304, 530
CviQI	GTAC	2 cut(s)	181, 193
DdeI	CTNAG	5 cut(s)	402, 798, 845, 888, 991
DpnI	GATC	4 cut(s)	247, 489, 744, 1056
DpnII	GATC	4 cut(s)	245, 487, 742, 1054
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Eco130I	CCWWGG	5 cut(s)	184, 303, 322, 684, 746
Eco147I	AGGCCT	1 cut(s)	989
Eco57I	CTGAAG	1 cut(s)	582
EcoRI	GAATTC	1 cut(s)	573
EcoT14I	CCWWGG	5 cut(s)	184, 303, 322, 684, 746
ErhI	CCWWGG	5 cut(s)	184, 303, 322, 684, 746
FaeI	CATG	5 cut(s)	18, 60, 199, 307, 533
FatI	CATG	5 cut(s)	14, 56, 195, 303, 529
Fnu4HI	GCNGC	8 cut(s)	284, 509, 512, 567, 609, 735, 753, 921
FokI	GGATG	3 cut(s)	210, 621, 853
Fsp4HI	GCNGC	8 cut(s)	284, 509, 512, 567, 609, 735, 753, 921
FspBI	CTAG	4 cut(s)	185, 350, 983, 1087
GlaI	GCGC	2 cut(s)	505, 507
GluI	GCNGC	8 cut(s)	284, 509, 512, 567, 609, 735, 753, 921
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	222, 989
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	2 cut(s)	506, 508
Hin1II	CATG	5 cut(s)	18, 60, 199, 307, 533
Hin6I	GCGC	2 cut(s)	504, 506
HinP1I	GCGC	2 cut(s)	504, 506
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	3 cut(s)	309, 853, 892
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	6 cut(s)	211, 257, 304, 338, 556, 689
Hpy166II	GTNNAC	4 cut(s)	329, 373, 582, 776
Hpy188I	TCNGA	2 cut(s)	848, 994
Hpy188III	TCNNGA	3 cut(s)	491, 641, 1004
Hpy8I	GTNNAC	4 cut(s)	329, 373, 582, 776
HpyAV	CCTTC	5 cut(s)	124, 279, 534, 546, 843
HpyCH4III	ACNGT	2 cut(s)	32, 417
HpyCH4IV	ACGT	2 cut(s)	762, 916
HpyCH4V	TGCA	6 cut(s)	60, 286, 582, 596, 611, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 346, 563
HpyF3I	CTNAG	5 cut(s)	402, 798, 845, 888, 991
HpySE526I	ACGT	2 cut(s)	762, 916
Hsp92II	CATG	5 cut(s)	18, 60, 199, 307, 533
HspAI	GCGC	2 cut(s)	504, 506
KpnI	GGTACC	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	245, 487, 742, 1054
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	7 cut(s)	270, 495, 578, 595, 746, 764, 932
LweI	GCATC	2 cut(s)	433, 831
MaeI	CTAG	4 cut(s)	185, 350, 983, 1087
MaeII	ACGT	2 cut(s)	762, 916
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	247, 489, 744, 1056
MboI	GATC	4 cut(s)	245, 487, 742, 1054
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	3 cut(s)	30, 342, 584
MluCI	AATT	6 cut(s)	36, 423, 573, 697, 995, 1070
MlyI	GAGTC	2 cut(s)	318, 886
MmeI	TCCRAC	1 cut(s)	251
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	2 cut(s)	587, 639
MspA1I	CMGCKG	2 cut(s)	106, 802
MspI	CCGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	283, 346, 563
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	245, 487, 742, 1054
NlaIII	CATG	5 cut(s)	18, 60, 199, 307, 533
NlaIV	GGNNCC	2 cut(s)	172, 182
NmuCI	GTSAC	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	587
PauI	GCGCGC	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	989
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	853
PkrI	GCNGC	8 cut(s)	285, 510, 513, 568, 610, 736, 754, 922
PleI	GAGTC	2 cut(s)	317, 886
PpsI	GAGTC	2 cut(s)	317, 886
Ppu21I	YACGTR	1 cut(s)	917
PshBI	ATTAAT	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	172, 182
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	742
PteI	GCGCGC	1 cut(s)	504
PvuII	CAGCTG	2 cut(s)	106, 802
RsaI	GTAC	2 cut(s)	182, 194
RsaNI	GTAC	2 cut(s)	181, 193
RseI	CAYNNNNRTG	2 cut(s)	587, 639
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	8 cut(s)	284, 509, 512, 567, 609, 735, 753, 921
Sau3AI	GATC	4 cut(s)	245, 487, 742, 1054
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	318, 886
SduI	GDGCHC	3 cut(s)	30, 342, 584
SfaNI	GCATC	2 cut(s)	433, 831
SmiMI	CAYNNNNRTG	2 cut(s)	587, 639
SmlI	CTYRAG	2 cut(s)	278, 650
SmoI	CTYRAG	2 cut(s)	278, 650
Sse9I	AATT	6 cut(s)	36, 423, 573, 697, 995, 1070
SseBI	AGGCCT	1 cut(s)	989
SsiI	CCGC	2 cut(s)	512, 779
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	4 cut(s)	185, 350, 983, 1087
StuI	AGGCCT	1 cut(s)	989
StyI	CCWWGG	5 cut(s)	184, 303, 322, 684, 746
TaaI	ACNGT	2 cut(s)	32, 417
TaiI	ACGT	2 cut(s)	765, 919
TaqI	TCGA	3 cut(s)	333, 364, 519
TasI	AATT	6 cut(s)	36, 423, 573, 697, 995, 1070
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	1 cut(s)	853
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	3 cut(s)	35, 363, 679
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	7 cut(s)	283, 508, 566, 608, 734, 752, 920
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	7 cut(s)	42, 140, 204, 312, 623, 845, 931
TspGWI	ACGGA	2 cut(s)	567, 853
TspRI	CASTG	3 cut(s)	35, 363, 679
VneI	GTGCAC	1 cut(s)	580
VspI	ATTAAT	1 cut(s)	122
XapI	RAATTY	2 cut(s)	36, 573
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	4 cut(s)	185, 350, 983, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.