Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

49841768 .. 49878033

Gene Structure 36266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGGAGAAAAGAGCAAGATACTGATAATTGGAAGCACAGGCCATCTAGGCCAGTATATGGTGAAGGCAAGCGTTTCTTTGGGACATCCAACCTATGCTTATGTGCGACCAATCAAACCCACAACCGATTCTTCAAAGCTTCAGTTGCACAAGGAGTTTGAAGCCATGGGACTCACTCTTTTTCAAGGTGAACTGGACGATCATGAAAAGCTAGTGTGGGCACTTAAACTAGTTGACATTGTCATCTCTACTCTGGCGGTTCCGCAATATCTTGAACAGCTCAAAATAATCAAGGCTATCAAAGAAGCTGGGAATATAAAGAGATTTTTTCCTTCAGAATTCGGCAACGAAGTAGATAGAGTATGTGGGCTGCCACCTTTCGAGGCTATACATGTGAATAGAAGGAAGATCAGATGGGCTACAGAAGCTGCAGGAATTTCATACACTTATGTGTCTGCAAACAGTTTTGCTTCTTACTTTGTTGATTATTTACTTCATCCTCATGAGAAACGCGAGGAAGTAATCGTTTATGGCAGTGGCGAAGCCAAGGCCGTGTTAAACTATGAGGAAGATGTAGCCGCTTACACCATAAGAGCAGCAACGGATCTGAGGGCAGCCAACCGGATCGTGATTTGTAGACCGCAAGGAAACATTGTATCTCAATTGGAGTTGATATCAGCATGGGAGAAGAAAGGATGCACTCTTAAAAGGATCCATGTCCCAGAACAAGAAATTATAGAGCTCTCTAAGACAAGCAATGAGCGCTTAAATCGGTCTAAGAGAACCATGGACCGGTGCAGAACCTGTATGAGGTGCAGAACCTGTATGAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

279

Amino Acids

31.54

Weight (kDa)

8.97

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 261	4.7e-45	NmrA-like family
NAD_binding_10	PF13460	12 - 153	1.7e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	640
AccII	CGCG	1 cut(s)	516
AciI	CCGC	4 cut(s)	260, 266, 582, 644
AclWI	GGATC	4 cut(s)	615, 635, 709, 722
AcsI	RAATTY	2 cut(s)	341, 438
AcuI	CTGAAG	2 cut(s)	128, 321
AfeI	AGCGCT	2 cut(s)	767, 835
AfiI	CCNNNNNNNGG	3 cut(s)	61, 795, 813
AflIII	ACRYGT	1 cut(s)	394
AgeI	ACCGGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	138, 164, 188, 278
AhlI	ACTAGT	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	6 cut(s)	142, 214, 283, 311, 431, 745
AluI	AGCT	6 cut(s)	142, 214, 283, 311, 431, 745
Alw21I	GWGCWC	1 cut(s)	747
AlwI	GGATC	4 cut(s)	615, 635, 709, 722
AlwNI	CAGNNNCTG	3 cut(s)	431, 807, 825
Aor51HI	AGCGCT	2 cut(s)	767, 835
AoxI	GGCC	3 cut(s)	43, 52, 552
ApeKI	GCWGC	4 cut(s)	373, 431, 599, 617
ApoI	RAATTY	2 cut(s)	341, 438
AsiGI	ACCGGT	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	768, 836
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	2 cut(s)	76, 203
AvaII	GGWCC	1 cut(s)	793
BaeGI	GKGCMC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	4 cut(s)	360, 418, 611, 629
BccI	CCATC	2 cut(s)	54, 411
BceAI	ACGGC	1 cut(s)	539
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	3 cut(s)	50, 215, 233
BfmI	CTRYAG	2 cut(s)	423, 432
BfoI	RGCGCY	2 cut(s)	769, 837
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	5 cut(s)	374, 432, 582, 600, 618
BlsI	GCNGC	5 cut(s)	375, 433, 583, 601, 619
Bme18I	GGWCC	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	264, 716
BmsI	GCATC	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	168, 549, 789
BsaWI	WCCGGW	2 cut(s)	624, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 795, 813
Bse118I	RCCGGY	1 cut(s)	795
Bse1I	ACTGG	2 cut(s)	55, 201
Bse3DI	GCAATG	1 cut(s)	766
BseDI	CCNNGG	3 cut(s)	168, 549, 789
BseGI	GGATG	3 cut(s)	88, 499, 704
BseLI	CCNNNNNNNGG	3 cut(s)	61, 795, 813
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	55, 201
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	4 cut(s)	360, 418, 611, 629
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	2 cut(s)	820, 838
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	45, 54, 554
BshTI	ACCGGT	1 cut(s)	795
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	625, 796
BslFI	GGGAC	3 cut(s)	99, 186, 707
BslI	CCNNNNNNNGG	3 cut(s)	61, 795, 813
BsmFI	GGGAC	3 cut(s)	99, 186, 707
BsnI	GGCC	3 cut(s)	45, 54, 554
Bsp1286I	GDGCHC	2 cut(s)	226, 747
Bsp143I	GATC	5 cut(s)	202, 411, 607, 627, 714
Bsp19I	CCATGG	2 cut(s)	168, 789
BspACI	CCGC	4 cut(s)	260, 266, 582, 644
BspANI	GGCC	3 cut(s)	45, 54, 554
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	205, 505
BspLI	GGNNCC	2 cut(s)	264, 716
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	4 cut(s)	615, 635, 709, 722
BsrDI	GCAATG	1 cut(s)	766
BsrFI	RCCGGY	1 cut(s)	795
BsrI	ACTGG	2 cut(s)	55, 201
BssAI	RCCGGY	1 cut(s)	795
BssECI	CCNNGG	3 cut(s)	168, 549, 789
BssMI	GATC	5 cut(s)	202, 411, 607, 627, 714
BssT1I	CCWWGG	3 cut(s)	168, 549, 789
Bst4CI	ACNGT	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	3 cut(s)	611, 750, 780
BstDSI	CCRYGG	2 cut(s)	168, 789
BstENI	CCTNNNNNAGG	1 cut(s)	811
BstF5I	GGATG	3 cut(s)	88, 499, 704
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	2 cut(s)	769, 837
BstHHI	GCGC	2 cut(s)	768, 836
BstKTI	GATC	5 cut(s)	205, 414, 610, 630, 717
BstMBI	GATC	5 cut(s)	202, 411, 607, 627, 714
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 148, 428, 765
BstNSI	RCATGY	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	423, 432
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	360, 418, 611, 629
BstX2I	RGATCY	2 cut(s)	607, 714
BstYI	RGATCY	2 cut(s)	607, 714
BsuRI	GGCC	3 cut(s)	45, 54, 554
BtgI	CCRYGG	2 cut(s)	168, 789
BtsCI	GGATG	3 cut(s)	88, 499, 704
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	73
CaiI	CAGNNNCTG	3 cut(s)	431, 807, 825
CciI	TCATGA	2 cut(s)	205, 505
CfoI	GCGC	2 cut(s)	768, 836
Cfr10I	RCCGGY	1 cut(s)	795
Cfr13I	GGNCC	1 cut(s)	793
CspAI	ACCGGT	1 cut(s)	795
CviAII	CATG	7 cut(s)	169, 206, 395, 506, 684, 719, 790
DdeI	CTNAG	3 cut(s)	611, 750, 780
DpnI	GATC	5 cut(s)	204, 413, 609, 629, 716
DpnII	GATC	5 cut(s)	202, 411, 607, 627, 714
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	3 cut(s)	168, 549, 789
Eco24I	GRGCYC	1 cut(s)	747
Eco32I	GATATC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	793
Eco47III	AGCGCT	2 cut(s)	767, 835
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	2 cut(s)	128, 321
EcoICRI	GAGCTC	1 cut(s)	745
EcoNI	CCTNNNNNAGG	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	678
EcoT14I	CCWWGG	3 cut(s)	168, 549, 789
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	3 cut(s)	168, 549, 789
FaeI	CATG	7 cut(s)	172, 209, 398, 509, 687, 722, 793
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	3 cut(s)	99, 186, 707
FatI	CATG	7 cut(s)	168, 205, 394, 505, 683, 718, 789
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	5 cut(s)	374, 432, 582, 600, 618
FokI	GGATG	3 cut(s)	75, 486, 711
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	5 cut(s)	374, 432, 582, 600, 618
FspBI	CTAG	3 cut(s)	50, 215, 233
GlaI	GCGC	2 cut(s)	767, 835
GluI	GCNGC	5 cut(s)	374, 432, 582, 600, 618
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	2 cut(s)	769, 837
HaeIII	GGCC	3 cut(s)	45, 54, 554
HapII	CCGG	2 cut(s)	625, 796
HhaI	GCGC	2 cut(s)	768, 836
Hin1II	CATG	7 cut(s)	172, 209, 398, 509, 687, 722, 793
Hin6I	GCGC	2 cut(s)	766, 834
HinP1I	GCGC	2 cut(s)	766, 834
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	131, 174
HpaII	CCGG	2 cut(s)	625, 796
HphI	GGTGA	2 cut(s)	76, 203
Hpy166II	GTNNAC	3 cut(s)	194, 238, 641
Hpy188I	TCNGA	3 cut(s)	340, 416, 612
Hpy188III	TCNNGA	4 cut(s)	206, 275, 506, 631
Hpy8I	GTNNAC	3 cut(s)	194, 238, 641
HpyAV	CCTTC	3 cut(s)	61, 345, 399
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	151, 434, 461, 702, 801, 819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 148, 428, 765
HpyF3I	CTNAG	3 cut(s)	611, 750, 780
Hsp92II	CATG	7 cut(s)	172, 209, 398, 509, 687, 722, 793
HspAI	GCGC	2 cut(s)	766, 834
Kzo9I	GATC	5 cut(s)	202, 411, 607, 627, 714
Lsp1109I	GCAGC	4 cut(s)	360, 418, 611, 629
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	3 cut(s)	50, 215, 233
MalI	GATC	5 cut(s)	204, 413, 609, 629, 716
MboI	GATC	5 cut(s)	202, 411, 607, 627, 714
MboII	GAAGA	4 cut(s)	126, 421, 584, 703
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	2 cut(s)	607, 714
MhlI	GDGCHC	2 cut(s)	226, 747
MluCI	AATT	5 cut(s)	30, 341, 438, 665, 735
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	379, 511, 513, 562, 606, 807
MseI	TTAA	4 cut(s)	228, 560, 708, 770
MslI	CAYNNNNRTG	2 cut(s)	452, 504
MspI	CCGG	2 cut(s)	625, 796
MunI	CAATTG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	4 cut(s)	51, 148, 428, 765
NcoI	CCATGG	2 cut(s)	168, 789
NdeII	GATC	5 cut(s)	202, 411, 607, 627, 714
NlaIII	CATG	7 cut(s)	172, 209, 398, 509, 687, 722, 793
NlaIV	GGNNCC	2 cut(s)	264, 716
NspI	RCATGY	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	452
PagI	TCATGA	2 cut(s)	205, 505
PciI	ACATGT	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	795
PkrI	GCNGC	5 cut(s)	375, 433, 583, 601, 619
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PscI	ACATGT	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	747
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	264, 716
PspPI	GGNCC	1 cut(s)	793
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	3 cut(s)	431, 807, 825
PsuI	RGATCY	2 cut(s)	607, 714
PsyI	GACNNNGTC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	452, 504
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	228, 560, 708, 770
SatI	GCNGC	5 cut(s)	374, 432, 582, 600, 618
Sau3AI	GATC	5 cut(s)	202, 411, 607, 627, 714
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	2 cut(s)	226, 747
SfaNI	GCATC	1 cut(s)	689
SfcI	CTRYAG	2 cut(s)	423, 432
SfiI	GGCCNNNNNGGCC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	2 cut(s)	452, 504
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	5 cut(s)	30, 341, 438, 665, 735
SsiI	CCGC	4 cut(s)	260, 266, 582, 644
SspMI	CTAG	3 cut(s)	50, 215, 233
SstI	GAGCTC	1 cut(s)	747
StyI	CCWWGG	3 cut(s)	168, 549, 789
TaaI	ACNGT	1 cut(s)	467
TaqI	TCGA	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	765
TasI	AATT	5 cut(s)	30, 341, 438, 665, 735
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	4 cut(s)	228, 560, 708, 770
Tru9I	TTAA	4 cut(s)	228, 560, 708, 770
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	4 cut(s)	373, 431, 599, 617
TspDTI	ATGAA	3 cut(s)	222, 432, 488
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	544
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	793
XagI	CCTNNNNNAGG	1 cut(s)	811
XapI	RAATTY	2 cut(s)	341, 438
XceI	RCATGY	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	3 cut(s)	50, 215, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.