Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

56716021 .. 56851463

Gene Structure 135443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG344700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTGGAGAAAAGAGCAAGATACTGATAATTGGAAGCACTGGCCATCTAGGCCAGTACATGGTGAAAGCAAGCGTTTCTTTGGGACATCCAACCTATGCTTATGTGCGACCAATCAAACCCACCACCGATTCTTCAAAGCTTCAGTTGCACAAGGAGTTTGAAGCCATGGGACTCACTCTTTTTCAAGGTGAACTGGATGATCATGAAAAGCTAGTGCGGGCAGTTAAACTAGTTGACATTGTAATTTCTACTTTGGCTATTCCTCAACATCTTGAACAGCTCAAAATTATCAAGGCTATCAAAGAAGCAGGAAATATAAAGAGATTCTTTCCTTCAGAATTCGGATTTGAAGCAGATAGAGCAAGTGGGCTGCCACCTTTCGAGGCAATACATGTGAATAGAAGGCAGATTAGAAGGGCGACAGAAGCAGCAGGAATTTCCTACACTTACGTGTCTGCAAACACTTTTGCTTCTTACTTTGTTGATTATTTACTTCATCCTCATGAGAAACGCGAGGAAGTAATTGTTTATGGCAGTGGTGAAGCAAAGGCCGTGTTAAACTATGAGGAAGATGTGGCAGCTTACACCATAAGAGCAGCAGCAGATCCGAGGGCAGCCAACCGGATCGTGATTTGTAGACCGCAAGGAAACATTGTATCTCAGTTGGAGTTGATATCAGCATGGGAGAAAAAGACAGGACGCACTCTTAAAAGGATCCATGTCCCAGAACAAGAAATTATAGAGCTCTCTAAGAGTATGAAACCTAAACTCCTAACTTTTCTTCTTTTCATGTTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

267

Amino Acids

30.0

Weight (kDa)

9.23

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 247	1.5e-50	NmrA-like family
NAD_binding_10	PF13460	12 - 157	7.9e-11	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	640
AccII	CGCG	1 cut(s)	516
AciI	CCGC	2 cut(s)	220, 644
AclWI	GGATC	4 cut(s)	602, 635, 712, 725
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	341, 438
AcuI	CTGAAG	2 cut(s)	128, 321
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	2 cut(s)	394, 453
AgsI	TTSAA	5 cut(s)	138, 164, 188, 278, 353
AhlI	ACTAGT	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	142, 214, 283, 584, 748
AluI	AGCT	5 cut(s)	142, 214, 283, 584, 748
Alw21I	GWGCWC	1 cut(s)	750
AlwI	GGATC	4 cut(s)	602, 635, 712, 725
AoxI	GGCC	3 cut(s)	43, 52, 552
ApeKI	GCWGC	6 cut(s)	373, 431, 581, 599, 602, 617
ApoI	RAATTY	2 cut(s)	341, 438
AsuHPI	GGTGA	3 cut(s)	76, 203, 554
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	717
BanII	GRGCYC	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	6 cut(s)	360, 443, 593, 611, 614, 629
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	539
BclI	TGATCA	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	3 cut(s)	50, 215, 233
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	374, 432, 582, 600, 603, 618
BlsI	GCNGC	6 cut(s)	375, 433, 583, 601, 604, 619
BmiI	GGNNCC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	168, 611
BsaWI	WCCGGW	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	46, 55, 201
BseDI	CCNNGG	2 cut(s)	168, 611
BseGI	GGATG	3 cut(s)	88, 205, 499
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	3 cut(s)	46, 55, 201
BseXI	GCAGC	6 cut(s)	360, 443, 593, 611, 614, 629
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	45, 54, 554
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	3 cut(s)	99, 186, 710
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	3 cut(s)	99, 186, 710
BsnI	GGCC	3 cut(s)	45, 54, 554
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	4 cut(s)	202, 607, 627, 717
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	220, 644
BspANI	GGCC	3 cut(s)	45, 54, 554
BspCNI	CTCAG	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	205, 505
BspLI	GGNNCC	1 cut(s)	719
BspPI	GGATC	4 cut(s)	602, 635, 712, 725
BsrI	ACTGG	3 cut(s)	46, 55, 201
BssECI	CCNNGG	2 cut(s)	168, 611
BssMI	GATC	4 cut(s)	202, 607, 627, 717
BssT1I	CCWWGG	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	73, 222
BstDEI	CTNAG	2 cut(s)	663, 753
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	88, 205, 499
BstFNI	CGCG	1 cut(s)	516
BstKTI	GATC	4 cut(s)	205, 610, 630, 720
BstMBI	GATC	4 cut(s)	202, 607, 627, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 148, 362, 428
BstNSI	RCATGY	1 cut(s)	398
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	6 cut(s)	360, 443, 593, 611, 614, 629
BstX2I	RGATCY	2 cut(s)	607, 717
BstYI	RGATCY	2 cut(s)	607, 717
BsuRI	GGCC	3 cut(s)	45, 54, 554
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	88, 205, 499
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	39, 544
Cac8I	GCNNGC	2 cut(s)	73, 222
CciI	TCATGA	2 cut(s)	205, 505
CseI	GACGC	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	8 cut(s)	61, 169, 206, 395, 506, 684, 722, 793
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	663, 753
DpnI	GATC	4 cut(s)	204, 609, 629, 719
DpnII	GATC	4 cut(s)	202, 607, 627, 717
EaeI	YGGCCR	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	748
Eco57I	CTGAAG	2 cut(s)	128, 321
EcoICRI	GAGCTC	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	678
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	8 cut(s)	64, 172, 209, 398, 509, 687, 725, 796
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 314, 346
FaqI	GGGAC	3 cut(s)	99, 186, 710
FatI	CATG	8 cut(s)	60, 168, 205, 394, 505, 683, 721, 792
FauI	CCCGC	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	6 cut(s)	374, 432, 582, 600, 603, 618
FokI	GGATG	3 cut(s)	75, 212, 486
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	6 cut(s)	374, 432, 582, 600, 603, 618
FspBI	CTAG	3 cut(s)	50, 215, 233
GluI	GCNGC	6 cut(s)	374, 432, 582, 600, 603, 618
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	45, 54, 554
HapII	CCGG	1 cut(s)	625
HgaI	GACGC	1 cut(s)	711
Hin1II	CATG	8 cut(s)	64, 172, 209, 398, 509, 687, 725, 796
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	131, 174, 327
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	3 cut(s)	76, 203, 554
Hpy166II	GTNNAC	3 cut(s)	194, 238, 641
Hpy188I	TCNGA	3 cut(s)	340, 347, 612
Hpy188III	TCNNGA	4 cut(s)	206, 275, 506, 631
Hpy8I	GTNNAC	3 cut(s)	194, 238, 641
HpyAV	CCTTC	3 cut(s)	345, 399, 411
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	151, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 148, 362, 428
HpyF3I	CTNAG	2 cut(s)	663, 753
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	8 cut(s)	64, 172, 209, 398, 509, 687, 725, 796
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	202, 607, 627, 717
LpnPI	CCDG	8 cut(s)	27, 68, 182, 297, 420, 638, 684, 741
Lsp1109I	GCAGC	6 cut(s)	360, 443, 593, 611, 614, 629
MaeI	CTAG	3 cut(s)	50, 215, 233
MaeII	ACGT	1 cut(s)	453
MalI	GATC	4 cut(s)	204, 609, 629, 719
MboI	GATC	4 cut(s)	202, 607, 627, 717
MboII	GAAGA	3 cut(s)	126, 584, 776
MflI	RGATCY	2 cut(s)	607, 717
MhlI	GDGCHC	1 cut(s)	750
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	7 cut(s)	30, 246, 288, 341, 438, 525, 738
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	116, 648
MnlI	CCTC	6 cut(s)	276, 379, 511, 513, 562, 606
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	4 cut(s)	228, 560, 711, 797
MslI	CAYNNNNRTG	2 cut(s)	452, 504
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	1 cut(s)	625
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	4 cut(s)	51, 148, 362, 428
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	4 cut(s)	202, 607, 627, 717
NlaIII	CATG	8 cut(s)	64, 172, 209, 398, 509, 687, 725, 796
NlaIV	GGNNCC	1 cut(s)	719
NspI	RCATGY	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	452
PagI	TCATGA	2 cut(s)	205, 505
PciI	ACATGT	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	131, 327
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	6 cut(s)	375, 433, 583, 601, 604, 619
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	454
PscI	ACATGT	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	719
PsuI	RGATCY	2 cut(s)	607, 717
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	452, 504
SacI	GAGCTC	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	228, 560, 711, 797
SatI	GCNGC	6 cut(s)	374, 432, 582, 600, 603, 618
Sau3AI	GATC	4 cut(s)	202, 607, 627, 717
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	750
SfiI	GGCCNNNNNGGCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	2 cut(s)	452, 504
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	7 cut(s)	30, 246, 288, 341, 438, 525, 738
SsiI	CCGC	2 cut(s)	220, 644
SspMI	CTAG	3 cut(s)	50, 215, 233
SstI	GAGCTC	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	384
TasI	AATT	7 cut(s)	30, 246, 288, 341, 438, 525, 738
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	131, 327
Tru1I	TTAA	4 cut(s)	228, 560, 711, 797
Tru9I	TTAA	4 cut(s)	228, 560, 711, 797
TscAI	CASTG	2 cut(s)	46, 544
TseI	GCWGC	6 cut(s)	373, 431, 581, 599, 602, 617
TspDTI	ATGAA	4 cut(s)	222, 488, 776, 781
TspRI	CASTG	2 cut(s)	46, 544
Van91I	CCANNNNNTGG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	341, 438
XceI	RCATGY	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	3 cut(s)	50, 215, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.