Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

30676881 .. 30678191

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGGAACTGAGCAATGGCTTGTGGAGGACTTAATTGATCCGAAGTCGCATGATTGGATGGAAGACATTATACGTGAACTATTCACAAGGGAGGAAGCGGATGTCATTTTGAGTATTCCTTTAAGTCTACGAACTCCAGTTGACTGGTATATTTGGCACTATGATCTGAAGGGCTGCTTTAGTGTCAAAAGTTGGTATCACATGGCTAGAACGATGGACTTGAAAGAGGGGAGGGCTATAACAGCTGCTTCTAGTTCGTCTGGTAATGTTCTTGGGAGATATTGGAAGGGGGTTTGGAAGACTCAAGTACCTCCTAAGGTGCGTATATTTGTTTGGAGGCTTCCAAAAGGTATCCTTCCTACACGGAAAGCTCTGAATAAGCGTGTCCCTTTGAATGAGGTGAGTTGTGCTTTTTGTCATAAGCATGTGGAAGATGAGCTGCATCTGTTTAAATACTGCAAGTTGGTGTCGCAACTATGGCTAAGCAGTCCATTAGCTATGCATAGTGTCGATCACCCGGCTGCTTCTGTGTGTGATTGGATTTTTGAGTTGATGGACTCCCTCTTAAAACATCAGAGGGAGGCAGTTCATAAGCCTGTAGGCAGCAAGGGTCGAAGGCCATTAACACACTGGAAATTCCCTCCAAGTGGGAGGCTGAAGATTAATGTGGATGGGGCTTTCCAGGGTGATAATGGAAGAGGTGGAATTGGTGTAGTTGTAAGGGATGAGAGAGGTACTTGCATGGCAGCGTTGGCTAGGCCTTTCAGCTATGTTGCTTCTGCTATACACATGGAGGCAGAAGCTTTAAGGGCTGGATTGCTTATTGCTATCCACCAAGAATGGAATGACGTTGATATAGAATGTGATTGTGCGGTTCTTGCAGCAGCAATTGCATGTACTGAAGATGATCTCTCTGAGGTGGGTCGCATTGTGGAAGATTGTAAGTCTTACTTTACTGCTTTCAATTTTGTACAAGTGCGACACATTTACCGGGAAGCAAATGGAGTAGCCAACAGGTTAGCGCATCTTGCTAGTTTTTCATATGTTGATGAGTTTTGGTTAGATGAGGCTCCTGCTATTATTCAGGATGCACTCTATAAGGATAATTGTAAGGCTTCCAATGTAGCCCGGAGTATAGGTTATATGTCCCCTCTGCGGCATAATGCTTCTATTCCAATAATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

396

Amino Acids

44.87

Weight (kDa)

6.6

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	61 - 161	1.9e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	223 - 344	6.4e-27	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	3 cut(s)	101, 875, 1159
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	3 cut(s)	191, 680, 924
AfaI	GTAC	4 cut(s)	312, 739, 901, 975
AfiI	CCNNNNNNNGG	2 cut(s)	650, 1158
AgsI	TTSAA	3 cut(s)	226, 397, 967
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	6 cut(s)	248, 374, 442, 500, 771, 806
AluI	AGCT	6 cut(s)	248, 374, 442, 500, 771, 806
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	620, 761
ApeKI	GCWGC	8 cut(s)	177, 248, 442, 524, 606, 749, 884, 887
ApoI	RAATTY	1 cut(s)	638
AseI	ATTAAT	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	1027
AsuC2I	CCSGG	3 cut(s)	521, 995, 1132
AsuHPI	GGTGA	3 cut(s)	415, 509, 701
AxyI	CCTNAGG	1 cut(s)	318
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbsI	GAAGAC	2 cut(s)	72, 308
BbvI	GCAGC	8 cut(s)	164, 235, 429, 511, 618, 761, 896, 899
BccI	CCATC	4 cut(s)	55, 211, 550, 668
BciT130I	CCWGG	1 cut(s)	686
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	3 cut(s)	521, 995, 1132
BfaI	CTAG	4 cut(s)	210, 255, 759, 1035
BfmI	CTRYAG	1 cut(s)	600
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	9 cut(s)	178, 249, 443, 525, 607, 750, 885, 888, 1160
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	9 cut(s)	179, 250, 444, 526, 608, 751, 886, 889, 1161
Bme1390I	CCNGG	4 cut(s)	521, 686, 995, 1132
BmiI	GGNNCC	1 cut(s)	1074
BmrFI	CCNGG	4 cut(s)	521, 686, 995, 1132
BmsI	GCATC	3 cut(s)	454, 1036, 1081
BpiI	GAAGAC	2 cut(s)	72, 308
BpmI	CTGGAG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	3 cut(s)	521, 995, 1132
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	1126, 1156
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 1158
Bse1I	ACTGG	3 cut(s)	140, 152, 638
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	5 cut(s)	66, 109, 679, 733, 1096
BseLI	CCNNNNNNNGG	2 cut(s)	650, 1158
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	140, 152, 638
BseXI	GCAGC	8 cut(s)	164, 235, 429, 511, 618, 761, 896, 899
BshFI	GGCC	2 cut(s)	622, 763
BsiSI	CCGG	3 cut(s)	521, 994, 1132
BslFI	GGGAC	2 cut(s)	374, 1135
BslI	CCNNNNNNNGG	2 cut(s)	650, 1158
BsmFI	GGGAC	2 cut(s)	374, 1135
BsnI	GGCC	2 cut(s)	622, 763
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	4 cut(s)	40, 166, 514, 910
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	3 cut(s)	101, 875, 1159
BspANI	GGCC	2 cut(s)	622, 763
BspCNI	CTCAG	2 cut(s)	4, 910
BspLI	GGNNCC	1 cut(s)	1074
BspPI	GGATC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	973
BsrI	ACTGG	3 cut(s)	140, 152, 638
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	4 cut(s)	40, 166, 514, 910
Bst2UI	CCWGG	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	973
BstBAI	YACGTR	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	12, 318, 485, 918
BstF5I	GGATG	5 cut(s)	66, 109, 679, 733, 1096
BstHHI	GCGC	1 cut(s)	1027
BstKTI	GATC	4 cut(s)	43, 169, 517, 913
BstMBI	GATC	4 cut(s)	40, 166, 514, 910
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 481, 755, 812, 881, 893, 1031
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	2 cut(s)	431, 900
BstSCI	CCNGG	4 cut(s)	519, 684, 993, 1130
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	8 cut(s)	164, 235, 429, 511, 618, 761, 896, 899
BstV2I	GAAGAC	2 cut(s)	72, 308
BstXI	CCANNNNNNTGG	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	622, 763
BtsCI	GGATG	5 cut(s)	66, 109, 679, 733, 1096
BtsIMutI	CAGTG	1 cut(s)	631
CfoI	GCGC	1 cut(s)	1027
Csp6I	GTAC	4 cut(s)	311, 738, 900, 974
CviAII	CATG	6 cut(s)	53, 205, 428, 745, 793, 897
CviQI	GTAC	4 cut(s)	311, 738, 900, 974
DdeI	CTNAG	4 cut(s)	12, 318, 485, 918
DpnI	GATC	4 cut(s)	42, 168, 516, 912
DpnII	GATC	4 cut(s)	40, 166, 514, 910
DraI	TTTAAA	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	763
Eco57I	CTGAAG	3 cut(s)	191, 680, 924
Eco81I	CCTNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	507
FaeI	CATG	6 cut(s)	56, 208, 431, 748, 796, 900
FalI	AAGNNNNNCTT	6 cut(s)	164, 196, 342, 374, 938, 970
FaqI	GGGAC	2 cut(s)	374, 1135
FatI	CATG	6 cut(s)	52, 204, 427, 744, 792, 896
FauNDI	CATATG	1 cut(s)	1045
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	9 cut(s)	178, 249, 443, 525, 607, 750, 885, 888, 1160
FokI	GGATG	5 cut(s)	73, 116, 686, 740, 1103
Fsp4HI	GCNGC	9 cut(s)	178, 249, 443, 525, 607, 750, 885, 888, 1160
FspBI	CTAG	4 cut(s)	210, 255, 759, 1035
GlaI	GCGC	1 cut(s)	1026
GluI	GCNGC	9 cut(s)	178, 249, 443, 525, 607, 750, 885, 888, 1160
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	622, 763
HapII	CCGG	3 cut(s)	521, 994, 1132
HhaI	GCGC	1 cut(s)	1027
Hin1II	CATG	6 cut(s)	56, 208, 431, 748, 796, 900
Hin6I	GCGC	1 cut(s)	1025
HinP1I	GCGC	1 cut(s)	1025
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	2 cut(s)	304, 560
HpaII	CCGG	3 cut(s)	521, 994, 1132
HphI	GGTGA	3 cut(s)	415, 509, 701
Hpy166II	GTNNAC	3 cut(s)	80, 131, 145
Hpy188I	TCNGA	5 cut(s)	45, 171, 378, 579, 919
Hpy188III	TCNNGA	1 cut(s)	1088
Hpy8I	GTNNAC	3 cut(s)	80, 131, 145
HpyAV	CCTTC	4 cut(s)	166, 283, 368, 612
HpyCH4IV	ACGT	2 cut(s)	76, 852
HpyCH4V	TGCA	7 cut(s)	445, 462, 505, 744, 884, 896, 1094
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 481, 755, 812, 881, 893, 1031
HpyF3I	CTNAG	4 cut(s)	12, 318, 485, 918
HpySE526I	ACGT	2 cut(s)	76, 852
Hsp92II	CATG	6 cut(s)	56, 208, 431, 748, 796, 900
HspAI	GCGC	1 cut(s)	1025
Kzo9I	GATC	4 cut(s)	40, 166, 514, 910
LmnI	GCTCC	1 cut(s)	1078
Lsp1109I	GCAGC	8 cut(s)	164, 235, 429, 511, 618, 761, 896, 899
LweI	GCATC	3 cut(s)	454, 1036, 1081
MaeI	CTAG	4 cut(s)	210, 255, 759, 1035
MaeII	ACGT	2 cut(s)	76, 852
MalI	GATC	4 cut(s)	42, 168, 516, 912
MboI	GATC	4 cut(s)	40, 166, 514, 910
MboII	GAAGA	7 cut(s)	77, 313, 446, 673, 711, 917, 950
MfeI	CAATTG	1 cut(s)	891
MluCI	AATT	6 cut(s)	36, 638, 708, 891, 967, 1108
MlyI	GAGTC	2 cut(s)	298, 554
Mph1103I	ATGCAT	1 cut(s)	507
MseI	TTAA	7 cut(s)	35, 125, 453, 569, 626, 666, 809
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	521, 994, 1132
MspR9I	CCNGG	4 cut(s)	521, 686, 995, 1132
MunI	CAATTG	1 cut(s)	891
MvaI	CCWGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	7 cut(s)	245, 481, 755, 812, 881, 893, 1031
NciI	CCSGG	3 cut(s)	521, 995, 1132
NdeI	CATATG	1 cut(s)	1045
NdeII	GATC	4 cut(s)	40, 166, 514, 910
NlaIII	CATG	6 cut(s)	56, 208, 431, 748, 796, 900
NlaIV	GGNNCC	1 cut(s)	1074
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	2 cut(s)	431, 900
PceI	AGGCCT	1 cut(s)	763
PkrI	GCNGC	9 cut(s)	179, 250, 444, 526, 608, 751, 886, 889, 1161
PleI	GAGTC	2 cut(s)	298, 554
PpsI	GAGTC	2 cut(s)	298, 554
Ppu21I	YACGTR	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	4 cut(s)	312, 739, 901, 975
RsaNI	GTAC	4 cut(s)	311, 738, 900, 974
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	7 cut(s)	35, 125, 453, 569, 626, 666, 809
SatI	GCNGC	9 cut(s)	178, 249, 443, 525, 607, 750, 885, 888, 1160
Sau3AI	GATC	4 cut(s)	40, 166, 514, 910
SchI	GAGTC	2 cut(s)	298, 554
ScrFI	CCNGG	4 cut(s)	521, 686, 995, 1132
SfaNI	GCATC	3 cut(s)	454, 1036, 1081
SfcI	CTRYAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	6 cut(s)	36, 638, 708, 891, 967, 1108
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	3 cut(s)	101, 875, 1159
SspMI	CTAG	4 cut(s)	210, 255, 759, 1035
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	4 cut(s)	519, 684, 993, 1130
TaiI	ACGT	2 cut(s)	79, 855
TaqI	TCGA	2 cut(s)	513, 616
TasI	AATT	6 cut(s)	36, 638, 708, 891, 967, 1108
TatI	WGTACW	2 cut(s)	899, 973
TauI	GCSGC	1 cut(s)	1162
Tru1I	TTAA	7 cut(s)	35, 125, 453, 569, 626, 666, 809
Tru9I	TTAA	7 cut(s)	35, 125, 453, 569, 626, 666, 809
TscAI	CASTG	1 cut(s)	638
TseI	GCWGC	8 cut(s)	177, 248, 442, 524, 606, 749, 884, 887
TspDTI	ATGAA	2 cut(s)	581, 1032
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	638
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	2 cut(s)	431, 900
XcmI	CCANNNNNNNNNTGG	2 cut(s)	630, 692
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	4 cut(s)	210, 255, 759, 1035
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.