Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006803.1

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

234886 .. 239798

Gene Structure 4913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006803.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgatgcttcaacgtctggcatatatgtggctgttcagaaacaataataccatcaccaaaacagatatggctggacaaaagagcaagatactgataattggaagcactggccatctaggccagtacatggtgaaagcaagcgtttctttgggacatccaacctatgcttatgtgcgaccaatcaaacccaccaccgattcttcaaagcttcagttgcacaaggagtttgaagccatgggactcactctttttcaaggtgaactggatgatcatgaaaagctagtgtgggcaattaaactagttgacattgtcatctctactctggcggttcctcaatatcttgaacagctcaaaataatcaaggctatcaaagaagctgggaatataaagagattctttccttcagaattcggaaacgaagtagatagagtaagtgggctgccacctttggaggctatacatgtgaatagaaggaagattagaagggctacagaagctgcaggaatttcatacacttatgtgtctgcaaacagttttgcttcttactttgttgattacttacttcatcctcatgagaaacgcgaggaagtaatcgtttatggcagtggtgaagccaaggccgtgttaaactatgaggaagatgtagccgcttacaccattagagcagcaacggatccgagggcagccaaccggatcgtgatttgtagaccgcaaggaaacattgtatctgaattggagttgatatcagcatgggagaataagacaggacgcactcttaaaaggatccatgtcccagaacaagaaattatagagctctctaagaccctccctcacccagacaacgtacgtgcatcgatccttcacagcatattcatcaatggggaacagatgaagtttgaactcacagacaacgacctcgaggcctccaagttatatcccgattacaagtacacttccattgatagctaccttgacatttgcttggttgctcctcccaagatcaaattagcagctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

339

Amino Acids

38.34

Weight (kDa)

7.75

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	582
AciI	CCGC	3 cut(s)	326, 648, 710
AclWI	GGATC	6 cut(s)	668, 681, 701, 778, 791, 850
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	2 cut(s)	407, 504
AcuI	CTGAAG	2 cut(s)	194, 387
AfaI	GTAC	3 cut(s)	125, 846, 950
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	6 cut(s)	11, 204, 230, 254, 344, 899
AhlI	ACTAGT	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	8 cut(s)	208, 280, 349, 377, 497, 814, 966, 1013
AluI	AGCT	8 cut(s)	208, 280, 349, 377, 497, 814, 966, 1013
Alw21I	GWGCWC	1 cut(s)	816
AlwI	GGATC	6 cut(s)	668, 681, 701, 778, 791, 850
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	4 cut(s)	109, 118, 618, 921
ApeKI	GCWGC	5 cut(s)	439, 497, 665, 683, 1010
ApoI	RAATTY	2 cut(s)	407, 504
AsuHPI	GGTGA	5 cut(s)	46, 142, 269, 620, 824
AvaI	CYCGRG	1 cut(s)	917
BalI	TGGCCA	1 cut(s)	111
BamHI	GGATCC	2 cut(s)	673, 783
BanII	GRGCYC	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	4 cut(s)	426, 484, 677, 695
BccI	CCATC	2 cut(s)	59, 120
BceAI	ACGGC	1 cut(s)	605
BclI	TGATCA	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	3 cut(s)	116, 281, 299
BfmI	CTRYAG	2 cut(s)	489, 498
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	6 cut(s)	440, 498, 648, 666, 684, 1011
BlsI	GCNGC	6 cut(s)	441, 499, 649, 667, 685, 1012
BmeT110I	CYCGRG	1 cut(s)	917
BmiI	GGNNCC	3 cut(s)	330, 675, 785
BmsI	GCATC	1 cut(s)	860
Bsa29I	ATCGAT	1 cut(s)	854
BsaAI	YACGTR	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	234, 615, 677
BsaWI	WCCGGW	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	3 cut(s)	112, 121, 267
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	3 cut(s)	234, 615, 677
BseGI	GGATG	3 cut(s)	154, 271, 565
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	3 cut(s)	112, 121, 267
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	4 cut(s)	426, 484, 677, 695
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	4 cut(s)	111, 120, 620, 923
BshVI	ATCGAT	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	816
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	691
BsiWI	CGTACG	1 cut(s)	844
BslFI	GGGAC	3 cut(s)	165, 252, 776
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	3 cut(s)	165, 252, 776
BsnI	GGCC	4 cut(s)	111, 120, 620, 923
BsoBI	CYCGRG	1 cut(s)	917
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	3 cut(s)	326, 648, 710
BspANI	GGCC	4 cut(s)	111, 120, 620, 923
BspDI	ATCGAT	1 cut(s)	854
BspFNI	CGCG	1 cut(s)	582
BspHI	TCATGA	2 cut(s)	271, 571
BspLI	GGNNCC	3 cut(s)	330, 675, 785
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	6 cut(s)	668, 681, 701, 778, 791, 850
BsrI	ACTGG	3 cut(s)	112, 121, 267
BssECI	CCNNGG	3 cut(s)	234, 615, 677
BssMI	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
BssT1I	CCWWGG	2 cut(s)	234, 615
Bst4CI	ACNGT	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	819
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	154, 271, 565
BstFNI	CGCG	1 cut(s)	582
BstKTI	GATC	6 cut(s)	271, 676, 696, 786, 858, 1002
BstMBI	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 214, 494
BstNSI	RCATGY	1 cut(s)	464
BstSFI	CTRYAG	2 cut(s)	489, 498
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	426, 484, 677, 695
BstX2I	RGATCY	2 cut(s)	673, 783
BstYI	RGATCY	2 cut(s)	673, 783
Bsu15I	ATCGAT	1 cut(s)	854
BsuRI	GGCC	4 cut(s)	111, 120, 620, 923
BsuTUI	ATCGAT	1 cut(s)	854
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	154, 271, 565
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	105, 610
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	2 cut(s)	271, 571
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	3 cut(s)	124, 845, 949
CviAII	CATG	7 cut(s)	127, 235, 272, 461, 572, 750, 788
CviQI	GTAC	3 cut(s)	124, 845, 949
DdeI	CTNAG	1 cut(s)	819
DpnI	GATC	6 cut(s)	270, 675, 695, 785, 857, 1001
DpnII	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
EaeI	YGGCCR	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	2 cut(s)	234, 615
Eco147I	AGGCCT	1 cut(s)	923
Eco24I	GRGCYC	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	744
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	194, 387
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	814
EcoRI	GAATTC	1 cut(s)	407
EcoRV	GATATC	1 cut(s)	744
EcoT14I	CCWWGG	2 cut(s)	234, 615
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	2 cut(s)	234, 615
FaeI	CATG	7 cut(s)	130, 238, 275, 464, 575, 753, 791
FalI	AAGNNNNNCTT	4 cut(s)	130, 162, 380, 412
FaqI	GGGAC	3 cut(s)	165, 252, 776
FatI	CATG	7 cut(s)	126, 234, 271, 460, 571, 749, 787
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	6 cut(s)	440, 498, 648, 666, 684, 1011
FokI	GGATG	3 cut(s)	141, 278, 552
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	6 cut(s)	440, 498, 648, 666, 684, 1011
FspBI	CTAG	3 cut(s)	116, 281, 299
GluI	GCNGC	6 cut(s)	440, 498, 648, 666, 684, 1011
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	111, 120, 620, 923
HapII	CCGG	1 cut(s)	691
HgaI	GACGC	1 cut(s)	777
Hin1II	CATG	7 cut(s)	130, 238, 275, 464, 575, 753, 791
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	197, 240, 393
HpaII	CCGG	1 cut(s)	691
HphI	GGTGA	5 cut(s)	46, 142, 269, 620, 824
Hpy166II	GTNNAC	4 cut(s)	260, 304, 707, 951
Hpy188I	TCNGA	5 cut(s)	38, 406, 413, 678, 730
Hpy188III	TCNNGA	5 cut(s)	272, 341, 572, 697, 938
Hpy8I	GTNNAC	4 cut(s)	260, 304, 707, 951
HpyAV	CCTTC	4 cut(s)	411, 465, 477, 869
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	3 cut(s)	13, 843, 847
HpyCH4V	TGCA	4 cut(s)	217, 500, 527, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 214, 494
HpyF3I	CTNAG	1 cut(s)	819
HpySE526I	ACGT	3 cut(s)	13, 843, 847
Hsp92II	CATG	7 cut(s)	130, 238, 275, 464, 575, 753, 791
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
LmnI	GCTCC	1 cut(s)	994
Lsp1109I	GCAGC	4 cut(s)	426, 484, 677, 695
LweI	GCATC	1 cut(s)	860
MaeI	CTAG	3 cut(s)	116, 281, 299
MaeII	ACGT	3 cut(s)	13, 843, 847
MalI	GATC	6 cut(s)	270, 675, 695, 785, 857, 1001
MboI	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
MboII	GAAGA	3 cut(s)	192, 487, 650
MflI	RGATCY	2 cut(s)	673, 783
MhlI	GDGCHC	1 cut(s)	816
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	7 cut(s)	96, 291, 407, 504, 731, 804, 1004
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	182
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	3 cut(s)	294, 626, 777
MslI	CAYNNNNRTG	3 cut(s)	25, 518, 570
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	691
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	117, 214, 494
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
NlaIII	CATG	7 cut(s)	130, 238, 275, 464, 575, 753, 791
NlaIV	GGNNCC	3 cut(s)	330, 675, 785
NspI	RCATGY	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	917
PagI	TCATGA	2 cut(s)	271, 571
PceI	AGGCCT	1 cut(s)	923
PciI	ACATGT	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	197, 393
Pfl23II	CGTACG	1 cut(s)	844
PflFI	GACNNNGTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	6 cut(s)	441, 499, 649, 667, 685, 1012
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	848
PscI	ACATGT	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	816
PspFI	CCCAGC	1 cut(s)	377
PspLI	CGTACG	1 cut(s)	844
PspN4I	GGNNCC	3 cut(s)	330, 675, 785
PspXI	VCTCGAGB	1 cut(s)	917
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	673, 783
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	3 cut(s)	125, 846, 950
RsaNI	GTAC	3 cut(s)	124, 845, 949
RseI	CAYNNNNRTG	3 cut(s)	25, 518, 570
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	3 cut(s)	294, 626, 777
SatI	GCNGC	6 cut(s)	440, 498, 648, 666, 684, 1011
Sau3AI	GATC	6 cut(s)	268, 673, 693, 783, 855, 999
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	1 cut(s)	860
SfcI	CTRYAG	2 cut(s)	489, 498
SfiI	GGCCNNNNNGGCC	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	917
SlaI	CTCGAG	1 cut(s)	917
SmiMI	CAYNNNNRTG	3 cut(s)	25, 518, 570
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	7 cut(s)	96, 291, 407, 504, 731, 804, 1004
SseBI	AGGCCT	1 cut(s)	923
SsiI	CCGC	3 cut(s)	326, 648, 710
SspMI	CTAG	3 cut(s)	116, 281, 299
SstI	GAGCTC	1 cut(s)	816
StuI	AGGCCT	1 cut(s)	923
StyI	CCWWGG	2 cut(s)	234, 615
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	3 cut(s)	16, 846, 850
TaqI	TCGA	2 cut(s)	854, 918
TasI	AATT	7 cut(s)	96, 291, 407, 504, 731, 804, 1004
TatI	WGTACW	2 cut(s)	123, 948
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	2 cut(s)	197, 393
Tru1I	TTAA	3 cut(s)	294, 626, 777
Tru9I	TTAA	3 cut(s)	294, 626, 777
TscAI	CASTG	2 cut(s)	112, 610
TseI	GCWGC	5 cut(s)	439, 497, 665, 683, 1010
TspDTI	ATGAA	5 cut(s)	288, 498, 554, 862, 905
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	2 cut(s)	112, 610
Tth111I	GACNNNGTC	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	407, 504
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	706
XspI	CTAG	3 cut(s)	116, 281, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.